Wall clock time and date at job start Mon Mar 30 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.53006 * 109.46934 * 240.00623 * 2 1 3 5 5 C 1.50701 * 109.47097 * 64.99833 * 4 2 1 6 6 H 1.08003 * 119.99958 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00151 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00153 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99943 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46835 * 89.99791 * 9 7 5 11 11 H 1.48492 * 109.47032 * 210.00315 * 9 7 5 12 12 H 1.48505 * 109.46946 * 330.00460 * 9 7 5 13 13 N 1.46496 * 109.47262 * 120.00888 * 2 1 3 14 14 C 1.36895 * 125.07110 * 60.27456 * 13 2 1 15 15 C 1.34206 * 109.92778 * 180.20727 * 14 13 2 16 16 C 1.46527 * 106.99746 * 359.56801 * 15 14 13 17 17 C 1.39637 * 133.98809 * 180.28489 * 16 15 14 18 18 C 1.36606 * 119.79921 * 179.97438 * 17 16 15 19 19 C 1.39037 * 120.50235 * 359.97438 * 18 17 16 20 20 F 1.35100 * 119.69101 * 180.02562 * 19 18 17 21 21 C 1.37938 * 120.61067 * 0.02562 * 19 18 17 22 22 C 1.37694 * 125.06166 * 239.99887 * 13 2 1 23 23 H 1.08997 * 109.46696 * 299.99364 * 1 2 3 24 24 H 1.08997 * 109.47155 * 59.99565 * 1 2 3 25 25 H 1.08997 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47156 * 184.99975 * 4 2 1 27 27 H 1.09000 * 109.46781 * 304.99999 * 4 2 1 28 28 H 0.96996 * 120.00163 * 179.97438 * 8 7 5 29 29 H 1.08003 * 125.03716 * 0.06075 * 14 13 2 30 30 H 1.08002 * 126.50569 * 179.83727 * 15 14 13 31 31 H 1.07994 * 120.09976 * 359.95560 * 17 16 15 32 32 H 1.08002 * 119.74940 * 180.02562 * 18 17 16 33 33 H 1.08003 * 120.11824 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6413 0.0573 -2.4766 6 1 1.0806 0.9748 -2.3756 7 6 1.9922 -0.4019 -3.7284 8 7 1.6447 0.2777 -4.7994 9 14 2.9626 -1.9885 -3.9032 10 1 2.0234 -3.1329 -4.0193 11 1 3.8106 -1.9185 -5.1201 12 1 3.8251 -2.1753 -2.7088 13 7 2.0184 -0.6908 1.1960 14 6 1.7569 -1.9968 1.5120 15 6 2.3489 -2.3137 2.6739 16 6 3.0554 -1.1159 3.1354 17 6 3.8424 -0.8236 4.2513 18 6 4.3749 0.4258 4.3980 19 6 4.1398 1.4096 3.4441 20 9 4.6750 2.6396 3.6054 21 6 3.3653 1.1415 2.3347 22 6 2.8134 -0.1246 2.1673 23 1 -0.3632 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1264 -0.7994 -1.2058 27 1 1.6054 -1.7197 -1.2953 28 1 1.8919 -0.0451 -5.6800 29 1 1.1604 -2.6715 0.9158 30 1 2.3150 -3.2714 3.1721 31 1 4.0292 -1.5830 4.9961 32 1 4.9838 0.6508 5.2612 33 1 3.1881 1.9116 1.5985 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695820616.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:46 Heat of formation + Delta-G solvation = 3.665826 kcal Electronic energy + Delta-G solvation = -17301.240327 eV Core-core repulsion = 14434.540453 eV Total energy + Delta-G solvation = -2866.699874 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -48.67960 -41.12358 -37.00308 -34.71211 -32.47812 -31.23096 -28.90529 -28.25035 -27.58754 -23.83835 -22.65226 -21.54633 -21.28722 -19.06313 -17.47220 -16.93103 -16.41073 -15.94164 -15.44482 -14.96400 -14.64440 -14.24625 -13.97335 -13.50054 -13.44411 -13.07416 -12.75264 -12.45166 -12.19594 -11.77283 -11.70388 -11.32703 -11.18608 -10.98909 -10.80105 -10.29614 -10.09874 -9.98376 -9.49216 -9.39584 -8.71170 -7.93183 -7.42643 -6.21468 -4.22613 1.15842 1.65045 2.94192 3.13954 3.19219 3.28492 3.31840 3.92058 4.30260 4.48591 4.76741 5.01707 5.06847 5.13038 5.27691 5.42260 5.58254 5.63592 5.67545 5.83246 5.91403 6.03180 6.19715 6.26743 6.28702 6.38733 6.51561 6.64969 6.83931 6.94272 6.97467 7.05559 7.45621 7.48972 7.69538 8.29757 8.79136 9.38890 10.90810 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.026063 B = 0.006135 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.073284 B = 4562.732906 C = 4877.516176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.138 3.862 3 H 0.092 0.908 4 C -0.016 4.016 5 C -0.525 4.525 6 H 0.077 0.923 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.266 1.266 13 N -0.464 5.464 14 C 0.071 3.929 15 C -0.220 4.220 16 C -0.123 4.123 17 C -0.045 4.045 18 C -0.186 4.186 19 C 0.106 3.894 20 F -0.144 7.144 21 C -0.159 4.159 22 C 0.122 3.878 23 H 0.044 0.956 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.266 0.734 29 H 0.166 0.834 30 H 0.144 0.856 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.700 -3.239 15.719 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.038 3.962 3 H 0.110 0.890 4 C -0.054 4.054 5 C -0.563 4.563 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.703 3.297 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.144 5.144 14 C -0.056 4.056 15 C -0.244 4.244 16 C -0.128 4.128 17 C -0.064 4.064 18 C -0.206 4.206 19 C 0.086 3.914 20 F -0.123 7.123 21 C -0.180 4.180 22 C 0.013 3.987 23 H 0.063 0.937 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.183 0.817 30 H 0.162 0.838 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.576 -3.035 15.194 15.574 hybrid contribution 0.600 -0.591 -0.397 0.931 sum 2.176 -3.626 14.797 15.389 Atomic orbital electron populations 1.22063 0.93862 1.02356 1.02329 1.21665 0.95066 0.96921 0.82520 0.89027 1.19935 0.96885 0.96294 0.92304 1.20883 1.36821 1.09984 0.88635 0.90450 1.24947 0.95211 0.96979 0.95763 1.69882 1.46179 1.39058 0.98175 0.86827 0.80740 0.84050 0.78044 1.20083 1.21092 1.19024 1.44764 1.40766 1.09768 1.19099 1.21837 1.01241 0.85485 0.97076 1.21538 1.06445 0.98025 0.98392 1.19263 1.02927 0.94429 0.96164 1.20012 0.94967 0.95543 0.95835 1.20480 1.06072 0.93490 1.00568 1.17106 0.97801 0.80491 0.96001 1.91464 1.84473 1.40743 1.95589 1.19861 1.02680 0.96048 0.99404 1.17879 0.96338 0.93797 0.90671 0.93736 0.89288 0.92603 0.95874 0.96253 0.92418 0.81652 0.83816 0.85462 0.85283 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.04 37.16 0.34 -2.17 16 2 C 0.14 2.60 2.95 -67.93 -0.20 2.40 16 3 H 0.09 1.75 7.34 -51.93 -0.38 1.37 16 4 C -0.02 -0.36 3.49 -27.88 -0.10 -0.46 16 5 C -0.53 -13.86 8.96 -34.44 -0.31 -14.17 16 6 H 0.08 2.16 7.30 -52.48 -0.38 1.78 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.37 13.96 55.43 0.77 -25.60 16 9 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 N -0.46 -8.05 2.65 -107.34 -0.28 -8.34 16 14 C 0.07 1.08 10.25 -16.71 -0.17 0.91 16 15 C -0.22 -3.11 11.08 -37.66 -0.42 -3.53 16 16 C -0.12 -1.89 6.37 -105.12 -0.67 -2.56 16 17 C -0.05 -0.59 10.05 -39.65 -0.40 -0.99 16 18 C -0.19 -2.44 9.95 -39.88 -0.40 -2.84 16 19 C 0.11 1.61 7.28 -39.40 -0.29 1.32 16 20 F -0.14 -2.17 17.25 2.25 0.04 -2.13 16 21 C -0.16 -2.58 9.78 -39.36 -0.39 -2.97 16 22 C 0.12 2.08 6.81 -83.99 -0.57 1.51 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.09 1.62 6.95 -51.93 -0.36 1.26 16 25 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 26 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 27 H 0.02 0.42 7.46 -51.93 -0.39 0.03 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.17 2.19 8.06 -52.48 -0.42 1.77 16 30 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.13 2.08 7.56 -52.48 -0.40 1.68 16 LS Contribution 283.98 15.07 4.28 4.28 Total: -1.00 -29.11 283.98 -7.50 -36.61 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -3.97 Total: 0.53 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -3.67 Total: -21.60 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.49 Total: -33.93 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.11 -7.50 -36.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695820616.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.276 kcal (2) G-P(sol) polarization free energy of solvation -29.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds