Wall clock time and date at job start Mon Mar 30 2020 05:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99688 * 2 1 4 4 C 1.50703 * 109.46618 * 125.00157 * 3 2 1 5 5 O 1.21287 * 120.00463 * 359.97438 * 4 3 2 6 6 N 1.34786 * 119.99640 * 180.02562 * 4 3 2 7 7 C 1.39921 * 119.99604 * 174.77915 * 6 4 3 8 8 C 1.38964 * 120.04023 * 326.32607 * 7 6 4 9 9 C 1.38159 * 120.06557 * 180.02562 * 8 7 6 10 10 C 1.38166 * 120.13636 * 359.69525 * 9 8 7 11 11 C 1.38904 * 120.07777 * 0.55855 * 10 9 8 12 12 O 1.35746 * 120.04003 * 179.74157 * 11 10 9 13 13 C 1.34834 * 117.00326 * 173.82630 * 12 11 10 14 14 H 1.07998 * 119.99812 * 354.58573 * 13 12 11 15 15 C 1.38651 * 120.00179 * 174.59583 * 13 12 11 16 16 N 1.31558 * 119.99950 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00182 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46922 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46639 * 119.99954 * 17 15 13 20 20 H 1.48496 * 109.47247 * 240.00197 * 17 15 13 21 21 C 1.38716 * 120.03185 * 146.34622 * 7 6 4 22 22 H 1.08000 * 120.00269 * 0.02562 * 1 2 3 23 23 H 1.07997 * 119.99432 * 179.97438 * 1 2 3 24 24 H 1.07999 * 120.00254 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47219 * 4.99949 * 3 2 1 26 26 H 1.09001 * 109.47392 * 244.99705 * 3 2 1 27 27 H 0.96996 * 119.99935 * 354.77803 * 6 4 3 28 28 H 1.07991 * 119.96495 * 0.02562 * 8 7 6 29 29 H 1.07995 * 119.92973 * 179.97438 * 9 8 7 30 30 H 1.08005 * 119.96067 * 180.29648 * 10 9 8 31 31 H 0.97002 * 120.00164 * 179.97438 * 16 15 13 32 32 H 1.07998 * 120.06855 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0204 1.3326 1.1639 5 8 3.0840 0.3859 1.9193 6 7 3.8049 2.4099 1.3660 7 6 4.6132 2.4827 2.5058 8 6 4.1806 1.9236 3.7022 9 6 4.9780 1.9957 4.8282 10 6 6.2101 2.6179 4.7669 11 6 6.6460 3.1833 3.5754 12 8 7.8543 3.7991 3.5175 13 6 8.2729 4.2132 2.3045 14 1 7.6967 3.9727 1.4233 15 6 9.4432 4.9475 2.1884 16 7 10.1450 5.2408 3.2618 17 14 10.0235 5.5206 0.5078 18 1 9.0634 5.0647 -0.5293 19 1 10.1028 7.0034 0.4907 20 1 11.3651 4.9498 0.2261 21 6 5.8470 3.1135 2.4429 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5399 -0.9353 -0.0004 24 1 1.8501 -0.9353 -0.0004 25 1 1.3585 2.1317 0.0896 26 1 2.6213 1.4027 -0.9314 27 1 3.8092 3.1345 0.7212 28 1 3.2202 1.4323 3.7519 29 1 4.6394 1.5608 5.7569 30 1 6.8332 2.6684 5.6477 31 1 10.9640 5.7542 3.1805 32 1 6.1851 3.5494 1.5144 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700867223.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:57 Heat of formation + Delta-G solvation = -39.538553 kcal Electronic energy + Delta-G solvation = -16847.284276 eV Core-core repulsion = 13966.338130 eV Total energy + Delta-G solvation = -2880.946145 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56079 -40.34887 -38.19141 -35.67589 -35.40059 -34.23327 -31.21095 -30.49485 -28.68984 -27.26327 -23.79473 -23.50422 -21.62225 -20.61668 -19.80047 -19.29044 -18.12966 -17.22040 -16.92112 -16.55448 -16.24731 -15.90625 -15.52280 -15.51937 -14.73677 -14.56005 -14.35020 -13.94114 -13.56845 -13.32981 -12.88265 -12.77250 -12.65988 -12.39424 -12.08011 -12.04529 -11.51656 -11.25344 -10.98354 -10.72857 -10.25238 -9.36638 -8.88450 -8.46799 -6.15850 0.38747 0.68028 1.32126 1.36511 1.44561 1.54830 1.63202 2.16581 2.20369 2.83154 3.16311 3.48272 3.73232 3.95627 4.12236 4.29276 4.32613 4.44088 4.57184 4.63422 4.70582 4.77590 5.01251 5.06805 5.10784 5.38360 5.47823 5.65418 5.66176 5.73612 5.83020 6.01380 6.16288 6.48471 6.97540 7.14726 7.77020 8.76505 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.028106 B = 0.005114 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.973627 B = 5474.181685 C = 6369.285132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C -0.101 4.101 4 C 0.509 3.491 5 O -0.560 6.560 6 N -0.664 5.664 7 C 0.186 3.814 8 C -0.202 4.202 9 C -0.052 4.052 10 C -0.215 4.215 11 C 0.134 3.866 12 O -0.227 6.227 13 C -0.414 4.414 14 H 0.103 0.897 15 C -0.022 4.022 16 N -0.920 5.920 17 Si 1.020 2.980 18 H -0.249 1.249 19 H -0.268 1.268 20 H -0.271 1.271 21 C -0.261 4.261 22 H 0.114 0.886 23 H 0.107 0.893 24 H 0.099 0.901 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.425 0.575 28 H 0.129 0.871 29 H 0.153 0.847 30 H 0.119 0.881 31 H 0.273 0.727 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.697 -4.443 -9.173 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.176 4.176 3 C -0.140 4.140 4 C 0.299 3.701 5 O -0.438 6.438 6 N -0.310 5.310 7 C 0.091 3.909 8 C -0.222 4.222 9 C -0.071 4.071 10 C -0.235 4.235 11 C 0.083 3.917 12 O -0.133 6.133 13 C -0.490 4.490 14 H 0.120 0.880 15 C -0.220 4.220 16 N -0.558 5.558 17 Si 0.839 3.161 18 H -0.172 1.172 19 H -0.193 1.193 20 H -0.196 1.196 21 C -0.282 4.282 22 H 0.132 0.868 23 H 0.125 0.875 24 H 0.117 0.883 25 H 0.147 0.853 26 H 0.148 0.852 27 H 0.263 0.737 28 H 0.147 0.853 29 H 0.171 0.829 30 H 0.137 0.863 31 H 0.082 0.918 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.373 -4.966 -8.464 19.089 hybrid contribution 0.800 0.599 -0.556 1.143 sum -15.573 -4.367 -9.019 18.519 Atomic orbital electron populations 1.24051 0.95206 1.03244 0.99022 1.22539 0.96365 0.97309 1.01414 1.20885 0.97620 0.99193 0.96321 1.21629 0.80472 0.80725 0.87238 1.90706 1.68112 1.36107 1.48861 1.43594 1.41767 1.22673 1.22971 1.17492 0.89345 0.96856 0.87195 1.20851 1.02165 1.07527 0.91683 1.20921 0.91774 0.95578 0.98812 1.20479 0.99562 1.06984 0.96489 1.19613 0.85647 0.91815 0.94648 1.83984 1.29306 1.66687 1.33320 1.21849 1.08694 1.35063 0.83361 0.87989 1.26604 0.95336 0.95969 1.04056 1.70193 1.15977 1.38344 1.31270 0.84519 0.78612 0.78232 0.74765 1.17168 1.19269 1.19631 1.20868 0.95196 1.12300 0.99871 0.86797 0.87463 0.88274 0.85255 0.85159 0.73662 0.85320 0.82907 0.86292 0.91804 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 14.32 67.78 0.97 -1.53 16 2 C -0.16 -2.80 8.76 25.64 0.22 -2.57 16 3 C -0.10 -1.55 6.15 29.10 0.18 -1.37 16 4 C 0.51 13.35 7.56 87.66 0.66 14.01 16 5 O -0.56 -19.68 13.74 -3.05 -0.04 -19.72 16 6 N -0.66 -18.03 5.34 -303.54 -1.62 -19.65 16 7 C 0.19 6.89 6.27 38.14 0.24 7.13 16 8 C -0.20 -7.47 8.66 22.43 0.19 -7.28 16 9 C -0.05 -1.93 10.03 22.23 0.22 -1.70 16 10 C -0.22 -9.45 9.99 22.41 0.22 -9.23 16 11 C 0.13 6.73 6.64 22.56 0.15 6.88 16 12 O -0.23 -13.56 9.76 -22.74 -0.22 -13.78 16 13 C -0.41 -23.68 9.44 67.92 0.64 -23.04 16 14 H 0.10 5.31 5.30 -2.91 -0.02 5.29 16 15 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 16 N -0.92 -55.91 13.67 21.61 0.30 -55.62 16 17 Si 1.02 41.77 29.55 68.60 2.03 43.80 16 18 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 19 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 21 C -0.26 -11.34 9.04 22.51 0.20 -11.14 16 22 H 0.11 1.18 7.84 -2.91 -0.02 1.16 16 23 H 0.11 1.33 8.06 -2.91 -0.02 1.31 16 24 H 0.10 2.06 8.06 -2.91 -0.02 2.04 16 25 H 0.13 1.25 7.79 -2.39 -0.02 1.24 16 26 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.42 8.35 8.82 -92.71 -0.82 7.54 16 28 H 0.13 4.58 6.43 -2.92 -0.02 4.56 16 29 H 0.15 4.43 8.06 -2.91 -0.02 4.40 16 30 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 31 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.13 5.53 5.72 -2.91 -0.02 5.51 16 Total: -1.00 -75.31 286.31 5.14 -70.17 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.33 Total: 25.41 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 4.38 Total: -30.61 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -1.33 Total: -75.27 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.26 Total: -33.50 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -75.31 5.14 -70.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700867223.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.628 kcal (2) G-P(sol) polarization free energy of solvation -75.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds