Wall clock time and date at job start Mon Mar 30 2020 05:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33009 * 120.00091 * 2 1 4 4 C 1.47066 * 120.00166 * 359.97438 * 3 2 1 5 5 O 1.21632 * 119.99843 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00180 * 179.97438 * 4 3 2 7 7 C 1.39894 * 119.99877 * 185.56218 * 6 4 3 8 8 C 1.38755 * 120.10599 * 24.82346 * 7 6 4 9 9 C 1.38179 * 119.99286 * 179.97438 * 8 7 6 10 10 C 1.38357 * 120.20926 * 359.97438 * 9 8 7 11 11 C 1.38160 * 120.20684 * 359.97438 * 10 9 8 12 12 C 1.38745 * 120.00411 * 0.02562 * 11 10 9 13 13 O 1.35775 * 120.09887 * 179.97438 * 12 11 10 14 14 C 1.34801 * 117.00207 * 5.16941 * 13 12 11 15 15 H 1.07996 * 120.00041 * 354.97821 * 14 13 12 16 16 C 1.38641 * 119.99851 * 174.98907 * 14 13 12 17 17 N 1.31571 * 119.99688 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00035 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47001 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47307 * 119.99733 * 18 16 14 21 21 H 1.48502 * 109.46909 * 239.99700 * 18 16 14 22 22 H 1.09002 * 109.47034 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46753 * 299.99388 * 1 2 3 24 24 H 1.08994 * 109.47127 * 59.99764 * 1 2 3 25 25 H 1.08000 * 119.99579 * 180.02562 * 2 1 3 26 26 H 1.08002 * 120.00124 * 180.02562 * 3 2 1 27 27 H 0.97003 * 120.00272 * 5.56741 * 6 4 3 28 28 H 1.07991 * 119.99948 * 359.95572 * 8 7 6 29 29 H 1.08000 * 119.89388 * 180.02562 * 9 8 7 30 30 H 1.07997 * 119.89372 * 179.97438 * 10 9 8 31 31 H 1.08000 * 119.99454 * 179.74868 * 11 10 9 32 32 H 0.97004 * 119.99556 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1519 0.0000 4 6 1.4368 2.4255 -0.0006 5 8 0.2205 2.4256 -0.0006 6 7 2.1107 3.5927 0.0000 7 6 1.4161 4.8013 0.1168 8 6 0.1711 4.8322 0.7287 9 6 -0.5128 6.0274 0.8433 10 6 0.0401 7.1959 0.3501 11 6 1.2797 7.1751 -0.2597 12 6 1.9739 5.9798 -0.3795 13 8 3.1920 5.9570 -0.9789 14 6 3.7187 7.1441 -1.3402 15 1 3.1409 8.0491 -1.2237 16 6 5.0020 7.2033 -1.8614 17 7 5.7059 6.1008 -2.0031 18 14 5.7321 8.8484 -2.3614 19 1 4.7449 9.9272 -2.1029 20 1 6.9634 9.1040 -1.5717 21 1 6.0683 8.8217 -3.8076 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 2.0470 -0.9353 -0.0004 26 1 3.2521 1.1519 -0.0004 27 1 3.0774 3.5947 -0.0808 28 1 -0.2635 3.9222 1.1149 29 1 -1.4815 6.0497 1.3202 30 1 -0.4990 8.1272 0.4421 31 1 1.7062 8.0885 -0.6471 32 1 6.6040 6.1422 -2.3674 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701306089.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:00 Heat of formation + Delta-G solvation = -34.386340 kcal Electronic energy + Delta-G solvation = -17294.865921 eV Core-core repulsion = 14414.143192 eV Total energy + Delta-G solvation = -2880.722729 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.62174 -40.22639 -38.07018 -35.87854 -34.93965 -34.24399 -31.04142 -30.39034 -28.33172 -27.32278 -24.45623 -23.35477 -22.27679 -20.45012 -19.85032 -19.09556 -18.02403 -17.42578 -16.50315 -16.30400 -15.91022 -15.52822 -15.49527 -15.31337 -15.08206 -14.38052 -14.30074 -13.83342 -13.54406 -13.21955 -13.10679 -12.64300 -12.60072 -12.53880 -12.34149 -12.10408 -11.44631 -11.30464 -10.79535 -10.45347 -10.37088 -9.35752 -8.65088 -8.46049 -6.11387 0.22360 0.65798 0.76908 1.37349 1.44411 1.54273 2.15970 2.25056 2.31287 2.86733 3.19721 3.38076 3.79280 4.10066 4.17796 4.27536 4.44202 4.52873 4.62192 4.77128 4.85985 4.87857 5.06861 5.10433 5.16968 5.40975 5.47503 5.52641 5.64190 5.72424 5.76442 6.00700 6.22459 6.57330 6.99157 7.17957 7.75077 8.76063 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.006472 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.447138 B = 4325.311783 C = 5421.630703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.040 4.040 3 C -0.246 4.246 4 C 0.529 3.471 5 O -0.557 6.557 6 N -0.654 5.654 7 C 0.062 3.938 8 C -0.098 4.098 9 C -0.174 4.174 10 C -0.087 4.087 11 C -0.228 4.228 12 C 0.091 3.909 13 O -0.221 6.221 14 C -0.411 4.411 15 H 0.100 0.900 16 C -0.018 4.018 17 N -0.915 5.915 18 Si 1.015 2.985 19 H -0.254 1.254 20 H -0.269 1.269 21 H -0.271 1.271 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.167 0.833 26 H 0.145 0.855 27 H 0.413 0.587 28 H 0.142 0.858 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.127 0.873 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 -6.334 4.718 10.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.267 4.267 4 C 0.322 3.678 5 O -0.439 6.439 6 N -0.296 5.296 7 C -0.033 4.033 8 C -0.118 4.118 9 C -0.193 4.193 10 C -0.106 4.106 11 C -0.247 4.247 12 C 0.039 3.961 13 O -0.128 6.128 14 C -0.487 4.487 15 H 0.117 0.883 16 C -0.216 4.216 17 N -0.553 5.553 18 Si 0.835 3.165 19 H -0.177 1.177 20 H -0.194 1.194 21 H -0.196 1.196 22 H 0.099 0.901 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.184 0.816 26 H 0.163 0.837 27 H 0.249 0.751 28 H 0.160 0.840 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.145 0.855 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.155 -6.625 4.600 10.782 hybrid contribution 1.180 0.859 -0.472 1.534 sum -5.975 -5.766 4.129 9.273 Atomic orbital electron populations 1.21060 0.92500 1.02148 1.02565 1.24142 0.97100 0.97809 0.86839 1.22662 1.01366 0.90987 1.11663 1.19387 0.87549 0.84912 0.75935 1.90669 1.14459 1.87788 1.50979 1.43316 1.11190 1.04167 1.70934 1.17339 0.96244 0.83962 1.05735 1.21194 0.92748 0.99924 0.97970 1.21068 1.01638 0.91501 1.05125 1.21170 0.93757 0.99263 0.96363 1.21193 0.98123 0.97191 1.08240 1.19591 0.87985 0.94176 0.94307 1.83858 1.27879 1.33315 1.67704 1.21807 0.99361 0.84562 1.42952 0.88251 1.26446 0.95213 1.03312 0.96599 1.70154 1.11477 1.29471 1.44212 0.84565 0.78401 0.75398 0.78110 1.17698 1.19403 1.19636 0.90081 0.91506 0.92170 0.81564 0.83722 0.75083 0.84013 0.83368 0.83370 0.85517 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.45 71.24 0.60 -2.26 16 2 C -0.04 -0.83 10.35 24.52 0.25 -0.57 16 3 C -0.25 -6.63 10.03 23.42 0.23 -6.40 16 4 C 0.53 19.28 7.54 86.56 0.65 19.94 16 5 O -0.56 -21.83 10.23 -4.13 -0.04 -21.87 16 6 N -0.65 -26.96 5.28 -306.37 -1.62 -28.58 16 7 C 0.06 2.81 6.45 38.29 0.25 3.05 16 8 C -0.10 -3.92 8.72 22.38 0.20 -3.72 16 9 C -0.17 -6.05 10.04 22.28 0.22 -5.83 16 10 C -0.09 -3.10 10.04 22.28 0.22 -2.87 16 11 C -0.23 -10.01 9.16 22.37 0.21 -9.80 16 12 C 0.09 4.55 6.67 22.70 0.15 4.70 16 13 O -0.22 -12.68 9.17 -22.72 -0.21 -12.88 16 14 C -0.41 -23.16 9.49 67.92 0.64 -22.52 16 15 H 0.10 5.20 5.20 -2.91 -0.02 5.19 16 16 C -0.02 -0.97 5.49 84.83 0.47 -0.51 16 17 N -0.91 -53.65 13.67 21.61 0.30 -53.35 16 18 Si 1.02 41.85 29.55 68.60 2.03 43.88 16 19 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 22 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.07 1.74 7.22 -2.39 -0.02 1.72 16 24 H 0.06 1.67 7.22 -2.39 -0.02 1.65 16 25 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 26 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 27 H 0.41 17.11 8.33 -92.71 -0.77 16.34 16 28 H 0.14 5.52 5.78 -2.92 -0.02 5.51 16 29 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 30 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 31 H 0.13 5.54 5.64 -2.91 -0.02 5.52 16 32 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -69.14 279.71 4.94 -64.20 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: 0.38 Total: 35.40 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 4.10 Total: -26.79 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -1.32 Total: -81.93 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.25 Total: -34.75 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -69.14 4.94 -64.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701306089.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.818 kcal (2) G-P(sol) polarization free energy of solvation -69.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds