Wall clock time and date at job start Mon Mar 30 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33010 * 120.00282 * 2 1 4 4 C 1.47057 * 120.00126 * 180.02562 * 3 2 1 5 5 O 1.21632 * 120.00442 * 0.02562 * 4 3 2 6 6 N 1.34786 * 119.99838 * 180.02562 * 4 3 2 7 7 C 1.39891 * 119.99640 * 184.09393 * 6 4 3 8 8 C 1.38750 * 120.10632 * 325.39771 * 7 6 4 9 9 C 1.38185 * 119.99251 * 180.02562 * 8 7 6 10 10 C 1.38347 * 120.20993 * 0.02812 * 9 8 7 11 11 C 1.38167 * 120.20930 * 359.97438 * 10 9 8 12 12 C 1.38746 * 119.99874 * 359.72488 * 11 10 9 13 13 O 1.35774 * 120.10105 * 180.29898 * 12 11 10 14 14 C 1.34806 * 116.99936 * 5.42894 * 13 12 11 15 15 H 1.07998 * 120.00068 * 354.95555 * 14 13 12 16 16 C 1.38641 * 119.99757 * 174.95509 * 14 13 12 17 17 N 1.31568 * 119.99627 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00087 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.46932 * 89.99950 * 18 16 14 20 20 H 1.48503 * 109.46859 * 209.99774 * 18 16 14 21 21 H 1.48502 * 109.47060 * 329.99950 * 18 16 14 22 22 H 1.09005 * 109.46935 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47414 * 299.99604 * 1 2 3 24 24 H 1.09000 * 109.47495 * 60.00201 * 1 2 3 25 25 H 1.08004 * 119.99644 * 180.02562 * 2 1 3 26 26 H 1.08003 * 119.99395 * 0.02562 * 3 2 1 27 27 H 0.97001 * 119.99720 * 4.36636 * 6 4 3 28 28 H 1.07991 * 120.00124 * 0.03334 * 8 7 6 29 29 H 1.08005 * 119.89116 * 180.02562 * 9 8 7 30 30 H 1.08001 * 119.90096 * 179.97438 * 10 9 8 31 31 H 1.07993 * 119.99959 * 180.02562 * 11 10 9 32 32 H 0.97004 * 119.99605 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1519 0.0000 4 6 3.6427 1.1518 -0.0006 5 8 4.2509 0.0985 -0.0015 6 7 4.3166 2.3191 0.0000 7 6 5.7128 2.3206 -0.0871 8 6 6.4487 1.3092 0.5136 9 6 7.8278 1.3133 0.4266 10 6 8.4791 2.3240 -0.2578 11 6 7.7547 3.3353 -0.8590 12 6 6.3694 3.3364 -0.7824 13 8 5.6553 4.3259 -1.3777 14 6 6.3435 5.2148 -2.1217 15 1 7.4219 5.1692 -2.1570 16 6 5.6667 6.1873 -2.8416 17 7 6.3385 7.0551 -3.5674 18 14 3.8014 6.2665 -2.7800 19 1 3.3802 7.1518 -1.6646 20 1 3.2863 6.8080 -4.0633 21 1 3.2550 4.9028 -2.5631 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 2.0469 -0.9354 -0.0004 26 1 1.6320 2.0872 0.0004 27 1 3.8337 3.1579 0.0647 28 1 5.9437 0.5189 1.0488 29 1 8.3989 0.5250 0.8944 30 1 9.5572 2.3225 -0.3223 31 1 8.2666 4.1224 -1.3927 32 1 5.8650 7.7354 -4.0714 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701306093.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:03 Heat of formation + Delta-G solvation = -38.455494 kcal Electronic energy + Delta-G solvation = -17187.030249 eV Core-core repulsion = 14306.131068 eV Total energy + Delta-G solvation = -2880.899180 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.65525 -40.27612 -38.19062 -35.80882 -35.33156 -34.43090 -31.15529 -30.61198 -28.57028 -27.22748 -24.40007 -23.10202 -22.16379 -20.50139 -19.87708 -19.36182 -18.42317 -17.73653 -16.65580 -16.32842 -15.83207 -15.77226 -15.58754 -15.26781 -14.85389 -14.35800 -14.28336 -14.10602 -13.98322 -13.31973 -13.21180 -12.81255 -12.63941 -12.45610 -12.33797 -12.09551 -11.56172 -11.33231 -10.91631 -10.81610 -10.35454 -9.46766 -8.82757 -8.49219 -6.21406 0.16222 0.58043 0.65635 1.31790 1.36889 1.50911 2.12647 2.27477 2.28270 2.78500 2.89618 3.15975 3.72905 4.09596 4.12114 4.23178 4.36202 4.46570 4.56729 4.66992 4.74624 4.82541 4.97886 5.04648 5.24865 5.41358 5.45625 5.53393 5.57416 5.67195 5.74146 5.89123 6.20044 6.48497 6.84026 7.12001 7.53494 8.62038 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.008347 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.743727 B = 3353.688947 C = 5004.263490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.045 4.045 3 C -0.241 4.241 4 C 0.536 3.464 5 O -0.573 6.573 6 N -0.653 5.653 7 C 0.066 3.934 8 C -0.087 4.087 9 C -0.167 4.167 10 C -0.084 4.084 11 C -0.222 4.222 12 C 0.106 3.894 13 O -0.235 6.235 14 C -0.397 4.397 15 H 0.081 0.919 16 C 0.010 3.990 17 N -0.923 5.923 18 Si 0.969 3.031 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.256 1.256 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.115 0.885 26 H 0.150 0.850 27 H 0.416 0.584 28 H 0.139 0.861 29 H 0.152 0.848 30 H 0.147 0.853 31 H 0.119 0.881 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.808 -10.920 8.466 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.065 4.065 3 C -0.261 4.261 4 C 0.329 3.671 5 O -0.455 6.455 6 N -0.296 5.296 7 C -0.029 4.029 8 C -0.107 4.107 9 C -0.186 4.186 10 C -0.102 4.102 11 C -0.242 4.242 12 C 0.055 3.945 13 O -0.143 6.143 14 C -0.474 4.474 15 H 0.099 0.901 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.180 1.180 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.103 0.897 25 H 0.133 0.867 26 H 0.167 0.833 27 H 0.253 0.747 28 H 0.157 0.843 29 H 0.170 0.830 30 H 0.165 0.835 31 H 0.137 0.863 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.675 -11.412 8.315 17.117 hybrid contribution -0.121 1.070 -0.456 1.169 sum -9.795 -10.343 7.859 16.269 Atomic orbital electron populations 1.21089 0.89084 1.04615 1.03942 1.24016 0.98270 0.97313 0.86889 1.22540 0.90337 1.01708 1.11541 1.19354 0.89955 0.82564 0.75197 1.90700 1.71040 1.31993 1.51766 1.43170 1.04652 1.10174 1.71644 1.17154 0.83320 0.97813 1.04602 1.21101 0.94386 0.97113 0.98099 1.21112 0.93383 1.00633 1.03492 1.21194 1.00630 0.92751 0.95628 1.21235 0.92852 1.02886 1.07239 1.19314 0.91548 0.89483 0.94114 1.83429 1.36152 1.35369 1.59311 1.20675 0.92682 1.08726 1.25274 0.90122 1.25288 1.05100 0.94256 0.94238 1.69740 1.38589 1.18064 1.29991 0.85240 0.77755 0.79602 0.78354 1.18527 1.19852 1.18007 0.89771 0.89069 0.89675 0.86699 0.83271 0.74717 0.84335 0.83025 0.83511 0.86321 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 10.19 71.24 0.73 -0.81 16 2 C -0.04 -0.89 9.84 24.52 0.24 -0.65 16 3 C -0.24 -5.86 9.67 23.42 0.23 -5.63 16 4 C 0.54 18.23 7.60 86.55 0.66 18.89 16 5 O -0.57 -22.42 13.64 -4.13 -0.06 -22.48 16 6 N -0.65 -23.86 5.18 -306.36 -1.59 -25.44 16 7 C 0.07 2.73 6.32 38.29 0.24 2.97 16 8 C -0.09 -3.26 8.69 22.38 0.19 -3.06 16 9 C -0.17 -5.54 10.04 22.28 0.22 -5.32 16 10 C -0.08 -2.95 10.04 22.28 0.22 -2.73 16 11 C -0.22 -9.80 9.16 22.37 0.21 -9.60 16 12 C 0.11 5.00 6.67 22.70 0.15 5.15 16 13 O -0.24 -12.25 8.15 -22.76 -0.19 -12.44 16 14 C -0.40 -22.81 9.95 67.92 0.68 -22.13 16 15 H 0.08 4.88 5.44 -2.91 -0.02 4.87 16 16 C 0.01 0.54 5.49 84.83 0.47 1.00 16 17 N -0.92 -54.27 13.96 21.61 0.30 -53.97 16 18 Si 0.97 43.32 28.62 68.60 1.96 45.29 16 19 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 23 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.12 2.55 7.49 -2.91 -0.02 2.52 16 26 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 27 H 0.42 13.85 8.56 -92.71 -0.79 13.06 16 28 H 0.14 5.06 6.20 -2.92 -0.02 5.04 16 29 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 30 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.12 5.61 5.64 -2.91 -0.02 5.60 16 32 H 0.28 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -68.78 284.76 5.03 -63.76 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.36 Total: 27.20 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 4.23 Total: -21.92 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -1.28 Total: -79.41 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.24 Total: -34.91 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.96 Total: 45.29 kcal Total: -68.78 5.03 -63.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701306093.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.302 kcal (2) G-P(sol) polarization free energy of solvation -68.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds