Wall clock time and date at job start Mon Mar 30 2020 05:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00440 * 2 1 4 4 C 1.50700 * 109.47188 * 124.99423 * 3 2 1 5 5 O 1.21286 * 120.00228 * 0.02562 * 4 3 2 6 6 N 1.34783 * 119.99575 * 179.97438 * 4 3 2 7 7 C 1.39986 * 119.99597 * 175.49172 * 6 4 3 8 8 C 1.38914 * 120.00328 * 215.12337 * 7 6 4 9 9 C 1.38004 * 120.00321 * 180.02562 * 8 7 6 10 10 C 1.38906 * 119.99637 * 0.02562 * 9 8 7 11 11 O 1.35780 * 119.99544 * 179.97438 * 10 9 8 12 12 C 1.34814 * 117.00386 * 5.34527 * 11 10 9 13 13 H 1.08001 * 119.99395 * 354.96428 * 12 11 10 14 14 C 1.38627 * 120.00361 * 174.96175 * 12 11 10 15 15 N 1.31571 * 119.99963 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00214 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47260 * 89.99770 * 16 14 12 18 18 H 1.48496 * 109.47559 * 210.00076 * 16 14 12 19 19 H 1.48502 * 109.47182 * 330.00306 * 16 14 12 20 20 C 1.38906 * 120.00519 * 0.25484 * 10 9 8 21 21 C 1.37994 * 120.00186 * 359.45181 * 20 10 9 22 22 H 1.07998 * 119.99738 * 0.02562 * 1 2 3 23 23 H 1.07991 * 120.00085 * 180.02562 * 1 2 3 24 24 H 1.07998 * 119.99738 * 179.97438 * 2 1 3 25 25 H 1.09008 * 109.46730 * 4.99747 * 3 2 1 26 26 H 1.08996 * 109.47164 * 244.99812 * 3 2 1 27 27 H 0.97003 * 119.99962 * 355.49585 * 6 4 3 28 28 H 1.08005 * 120.00053 * 0.02562 * 8 7 6 29 29 H 1.08002 * 120.00231 * 180.02562 * 9 8 7 30 30 H 0.97001 * 120.00332 * 179.97438 * 15 14 12 31 31 H 1.08003 * 119.99924 * 179.70124 * 20 10 9 32 32 H 1.08003 * 120.00725 * 180.27620 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0205 1.3326 1.1639 5 8 3.0846 0.3855 1.9189 6 7 3.8058 2.4094 1.3653 7 6 4.6255 2.4757 2.4981 8 6 4.8506 3.6962 3.1221 9 6 5.6592 3.7617 4.2386 10 6 6.2483 2.6072 4.7380 11 8 7.0443 2.6717 5.8362 12 6 7.1330 3.8642 6.4586 13 1 6.6507 4.7322 6.0339 14 6 7.8433 3.9764 7.6439 15 7 8.4304 2.9189 8.1616 16 14 7.9656 5.6286 8.5067 17 1 6.8358 5.7745 9.4594 18 1 9.2505 5.7066 9.2469 19 1 7.9076 6.7185 7.4996 20 6 6.0280 1.3876 4.1107 21 6 5.2147 1.3210 2.9979 22 1 -0.5399 0.9353 -0.0004 23 1 -0.5400 -0.9352 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3587 2.1317 0.0895 26 1 2.6215 1.4025 -0.9313 27 1 3.8029 3.1383 0.7253 28 1 4.3929 4.5940 2.7336 29 1 5.8339 4.7105 4.7240 30 1 8.9277 2.9974 8.9907 31 1 6.4900 0.4907 4.4962 32 1 5.0397 0.3721 2.5127 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706018435.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:06 Heat of formation + Delta-G solvation = -15.337208 kcal Electronic energy + Delta-G solvation = -16675.926314 eV Core-core repulsion = 13796.029617 eV Total energy + Delta-G solvation = -2879.896696 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.13627 -38.68122 -36.58547 -34.58086 -33.95248 -32.18444 -30.21039 -29.09822 -27.08274 -25.29280 -22.34947 -21.79716 -20.38266 -19.73070 -18.05854 -17.43526 -17.02720 -16.22643 -15.71786 -14.85293 -14.56341 -14.37577 -13.64605 -13.60797 -13.53335 -13.38911 -12.79978 -12.53615 -12.09605 -11.79475 -11.57042 -11.51761 -11.33419 -11.02025 -10.73179 -10.45611 -9.88986 -9.63288 -9.44256 -9.21391 -8.70132 -8.20291 -6.93194 -6.44044 -4.02304 2.05467 2.10457 2.21362 2.86349 3.13174 3.14515 3.18569 3.40308 3.97249 4.55061 4.61079 4.77915 5.06296 5.11325 5.20084 5.33658 5.36269 5.55654 5.72594 5.79698 6.14792 6.22669 6.29033 6.43481 6.53342 6.81478 6.85928 6.99477 7.16879 7.22588 7.41400 7.71842 7.79519 8.00382 8.38408 9.01214 9.71759 10.73970 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.056874 B = 0.003998 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.196497 B = 7001.487853 C = 7221.884071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 C -0.114 4.114 4 C 0.506 3.494 5 O -0.524 6.524 6 N -0.663 5.663 7 C 0.033 3.967 8 C -0.090 4.090 9 C -0.221 4.221 10 C 0.147 3.853 11 O -0.177 6.177 12 C -0.392 4.392 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.862 5.862 16 Si 0.941 3.059 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.268 1.268 20 C -0.180 4.180 21 C -0.067 4.067 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.116 0.884 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.402 0.598 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.270 0.730 31 H 0.121 0.879 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.671 1.015 -15.129 18.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.148 4.148 3 C -0.153 4.153 4 C 0.293 3.707 5 O -0.400 6.400 6 N -0.307 5.307 7 C -0.060 4.060 8 C -0.110 4.110 9 C -0.240 4.240 10 C 0.093 3.907 11 O -0.080 6.080 12 C -0.468 4.468 13 H 0.109 0.891 14 C -0.166 4.166 15 N -0.497 5.497 16 Si 0.766 3.234 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.192 1.192 20 C -0.199 4.199 21 C -0.087 4.087 22 H 0.113 0.887 23 H 0.118 0.882 24 H 0.134 0.866 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.236 0.764 28 H 0.128 0.872 29 H 0.149 0.851 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.364 0.105 -14.266 17.634 hybrid contribution -0.008 1.331 0.135 1.338 sum -10.373 1.436 -14.131 17.588 Atomic orbital electron populations 1.23811 0.95705 1.01955 1.01564 1.22524 0.95702 0.97548 0.99061 1.20825 0.98314 0.98396 0.97798 1.20623 0.80740 0.82755 0.86581 1.90708 1.67618 1.34820 1.46849 1.43262 1.41652 1.21684 1.24138 1.17282 1.00953 0.94867 0.92855 1.20488 0.99470 0.95498 0.95574 1.20974 1.04343 0.99208 0.99512 1.19419 0.89719 0.93123 0.88411 1.83991 1.55182 1.34662 1.34167 1.21316 1.34799 0.85261 1.05469 0.89077 1.25289 0.96058 0.99357 0.95848 1.70047 1.31182 1.28907 1.19557 0.85709 0.78160 0.80150 0.79381 1.19885 1.20268 1.19214 1.20159 1.04671 0.96148 0.98964 1.20746 0.94502 0.97499 0.95989 0.88651 0.88162 0.86609 0.88507 0.87981 0.76398 0.87180 0.85107 0.92007 0.86126 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 14.32 29.01 0.42 -1.27 16 2 C -0.13 -1.30 8.76 -36.03 -0.32 -1.61 16 3 C -0.11 -1.02 6.15 -29.03 -0.18 -1.20 16 4 C 0.51 7.00 7.67 -10.98 -0.08 6.91 16 5 O -0.52 -9.59 13.47 5.55 0.07 -9.52 16 6 N -0.66 -8.91 5.34 -9.82 -0.05 -8.96 16 7 C 0.03 0.59 6.30 -83.63 -0.53 0.06 16 8 C -0.09 -1.63 9.96 -39.42 -0.39 -2.02 16 9 C -0.22 -4.77 9.16 -39.42 -0.36 -5.13 16 10 C 0.15 3.62 6.65 -39.09 -0.26 3.36 16 11 O -0.18 -5.10 9.75 0.00 0.00 -5.10 16 12 C -0.39 -10.99 9.48 30.88 0.29 -10.70 16 13 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 15 N -0.86 -25.45 13.67 55.48 0.76 -24.70 16 16 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 C -0.18 -4.02 9.98 -39.42 -0.39 -4.42 16 21 C -0.07 -1.36 8.69 -39.41 -0.34 -1.70 16 22 H 0.10 0.71 7.84 -52.49 -0.41 0.30 16 23 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 24 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 25 H 0.10 0.68 7.79 -51.92 -0.40 0.28 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.40 3.76 8.82 -40.82 -0.36 3.40 16 28 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 29 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.12 2.62 8.06 -52.48 -0.42 2.20 16 32 H 0.13 2.53 6.23 -52.48 -0.33 2.20 16 LS Contribution 285.91 15.07 4.31 4.31 Total: -1.00 -33.34 285.91 -5.50 -38.84 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -3.32 Total: 6.38 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.24 Total: -16.73 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.71 Total: -33.65 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.07 Total: -14.62 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.34 -5.50 -38.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706018435.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.502 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds