Wall clock time and date at job start Mon Mar 30 2020 05:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00440 * 2 1 4 4 C 1.50700 * 109.47188 * 124.99423 * 3 2 1 5 5 O 1.21286 * 120.00228 * 0.02562 * 4 3 2 6 6 N 1.34783 * 119.99575 * 179.97438 * 4 3 2 7 7 C 1.39986 * 119.99597 * 175.49172 * 6 4 3 8 8 C 1.38914 * 120.00328 * 215.12337 * 7 6 4 9 9 C 1.38004 * 120.00321 * 180.02562 * 8 7 6 10 10 C 1.38906 * 119.99637 * 0.02562 * 9 8 7 11 11 O 1.35780 * 119.99544 * 179.97438 * 10 9 8 12 12 C 1.34814 * 117.00386 * 5.34527 * 11 10 9 13 13 H 1.08001 * 119.99395 * 354.96428 * 12 11 10 14 14 C 1.38627 * 120.00361 * 174.96175 * 12 11 10 15 15 N 1.31571 * 119.99963 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00214 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47260 * 89.99770 * 16 14 12 18 18 H 1.48496 * 109.47559 * 210.00076 * 16 14 12 19 19 H 1.48502 * 109.47182 * 330.00306 * 16 14 12 20 20 C 1.38906 * 120.00519 * 0.25484 * 10 9 8 21 21 C 1.37994 * 120.00186 * 359.45181 * 20 10 9 22 22 H 1.07998 * 119.99738 * 0.02562 * 1 2 3 23 23 H 1.07991 * 120.00085 * 180.02562 * 1 2 3 24 24 H 1.07998 * 119.99738 * 179.97438 * 2 1 3 25 25 H 1.09008 * 109.46730 * 4.99747 * 3 2 1 26 26 H 1.08996 * 109.47164 * 244.99812 * 3 2 1 27 27 H 0.97003 * 119.99962 * 355.49585 * 6 4 3 28 28 H 1.08005 * 120.00053 * 0.02562 * 8 7 6 29 29 H 1.08002 * 120.00231 * 180.02562 * 9 8 7 30 30 H 0.97001 * 120.00332 * 179.97438 * 15 14 12 31 31 H 1.08003 * 119.99924 * 179.70124 * 20 10 9 32 32 H 1.08003 * 120.00725 * 180.27620 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0205 1.3326 1.1639 5 8 3.0846 0.3855 1.9189 6 7 3.8058 2.4094 1.3653 7 6 4.6255 2.4757 2.4981 8 6 4.8506 3.6962 3.1221 9 6 5.6592 3.7617 4.2386 10 6 6.2483 2.6072 4.7380 11 8 7.0443 2.6717 5.8362 12 6 7.1330 3.8642 6.4586 13 1 6.6507 4.7322 6.0339 14 6 7.8433 3.9764 7.6439 15 7 8.4304 2.9189 8.1616 16 14 7.9656 5.6286 8.5067 17 1 6.8358 5.7745 9.4594 18 1 9.2505 5.7066 9.2469 19 1 7.9076 6.7185 7.4996 20 6 6.0280 1.3876 4.1107 21 6 5.2147 1.3210 2.9979 22 1 -0.5399 0.9353 -0.0004 23 1 -0.5400 -0.9352 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3587 2.1317 0.0895 26 1 2.6215 1.4025 -0.9313 27 1 3.8029 3.1383 0.7253 28 1 4.3929 4.5940 2.7336 29 1 5.8339 4.7105 4.7240 30 1 8.9277 2.9974 8.9907 31 1 6.4900 0.4907 4.4962 32 1 5.0397 0.3721 2.5127 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706018435.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:06 Heat of formation + Delta-G solvation = -38.347637 kcal Electronic energy + Delta-G solvation = -16676.924121 eV Core-core repulsion = 13796.029617 eV Total energy + Delta-G solvation = -2880.894503 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47548 -40.35489 -38.21722 -35.41562 -35.35773 -34.15222 -31.87795 -30.32369 -28.36193 -27.20983 -23.97162 -23.26751 -21.71587 -20.55628 -19.88039 -18.97177 -18.46626 -17.67885 -16.69883 -16.37023 -16.04360 -15.91423 -15.50218 -15.09195 -14.81745 -14.49692 -14.30098 -14.03374 -13.61262 -13.30456 -13.16593 -12.78879 -12.67965 -12.43505 -12.10737 -12.02632 -11.35768 -11.14217 -10.88415 -10.51388 -10.23784 -9.85285 -8.61596 -8.45482 -6.13339 0.50784 0.54517 1.33718 1.36924 1.45593 1.54923 1.70050 2.18899 2.30490 2.82612 3.15353 3.51735 3.79411 3.97927 4.08621 4.13565 4.34569 4.49028 4.60469 4.64166 4.72975 4.80740 5.05417 5.09220 5.19162 5.30930 5.47095 5.56768 5.68005 5.74609 5.84965 6.02581 6.17418 6.59101 6.98519 7.29115 7.79385 8.77914 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.056874 B = 0.003998 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.196497 B = 7001.487853 C = 7221.884071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.157 4.157 3 C -0.099 4.099 4 C 0.503 3.497 5 O -0.573 6.573 6 N -0.650 5.650 7 C 0.060 3.940 8 C -0.079 4.079 9 C -0.221 4.221 10 C 0.107 3.893 11 O -0.232 6.232 12 C -0.414 4.414 13 H 0.107 0.893 14 C -0.026 4.026 15 N -0.923 5.923 16 Si 1.021 2.979 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.248 1.248 20 C -0.193 4.193 21 C -0.075 4.075 22 H 0.114 0.886 23 H 0.104 0.896 24 H 0.098 0.902 25 H 0.128 0.872 26 H 0.135 0.865 27 H 0.428 0.572 28 H 0.161 0.839 29 H 0.133 0.867 30 H 0.272 0.728 31 H 0.110 0.890 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.132 3.547 -17.774 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.176 4.176 3 C -0.138 4.138 4 C 0.293 3.707 5 O -0.452 6.452 6 N -0.298 5.298 7 C -0.034 4.034 8 C -0.099 4.099 9 C -0.241 4.241 10 C 0.056 3.944 11 O -0.139 6.139 12 C -0.490 4.490 13 H 0.124 0.876 14 C -0.223 4.223 15 N -0.562 5.562 16 Si 0.840 3.160 17 H -0.190 1.190 18 H -0.198 1.198 19 H -0.171 1.171 20 C -0.213 4.213 21 C -0.095 4.095 22 H 0.132 0.868 23 H 0.122 0.878 24 H 0.116 0.884 25 H 0.146 0.854 26 H 0.153 0.847 27 H 0.267 0.733 28 H 0.178 0.822 29 H 0.150 0.850 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.874 2.656 -17.011 21.498 hybrid contribution 0.511 0.388 0.631 0.900 sum -12.362 3.044 -16.381 20.747 Atomic orbital electron populations 1.24040 0.95390 1.03122 0.99479 1.22588 0.96341 0.97660 1.01001 1.20855 0.97687 0.98749 0.96487 1.21623 0.80573 0.81457 0.87059 1.90706 1.69007 1.36628 1.48855 1.43237 1.40572 1.22829 1.23130 1.17435 0.98915 0.93890 0.93114 1.20874 0.97864 0.97336 0.93803 1.21149 1.04315 0.98120 1.00513 1.19870 0.91106 0.94963 0.88415 1.83959 1.58009 1.35536 1.36407 1.21891 1.35219 0.85768 1.06099 0.87553 1.26652 0.95340 1.03906 0.96378 1.70207 1.33409 1.31936 1.20613 0.84548 0.78326 0.74873 0.78214 1.18969 1.19807 1.17133 1.20276 1.05507 0.95525 0.99979 1.20863 0.94365 0.98855 0.95467 0.86802 0.87787 0.88357 0.85435 0.84708 0.73330 0.82154 0.84957 0.91883 0.87201 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 14.32 67.78 0.97 -1.66 16 2 C -0.16 -2.73 8.76 25.64 0.22 -2.50 16 3 C -0.10 -1.32 6.15 29.10 0.18 -1.14 16 4 C 0.50 12.23 7.67 87.66 0.67 12.90 16 5 O -0.57 -20.18 13.47 -3.05 -0.04 -20.22 16 6 N -0.65 -14.67 5.34 -303.37 -1.62 -16.29 16 7 C 0.06 1.99 6.30 38.17 0.24 2.23 16 8 C -0.08 -2.58 9.96 22.38 0.22 -2.36 16 9 C -0.22 -9.42 9.16 22.37 0.20 -9.21 16 10 C 0.11 5.48 6.65 22.59 0.15 5.63 16 11 O -0.23 -14.26 9.75 -22.91 -0.22 -14.48 16 12 C -0.41 -24.10 9.48 67.91 0.64 -23.46 16 13 H 0.11 5.55 5.20 -2.91 -0.02 5.54 16 14 C -0.03 -1.46 5.49 84.82 0.47 -1.00 16 15 N -0.92 -57.45 13.67 21.61 0.30 -57.16 16 16 Si 1.02 42.64 29.55 68.60 2.03 44.67 16 17 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 18 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 19 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 20 C -0.19 -9.03 9.98 22.37 0.22 -8.81 16 21 C -0.08 -3.01 8.69 22.38 0.19 -2.82 16 22 H 0.11 1.20 7.84 -2.91 -0.02 1.18 16 23 H 0.10 1.37 8.06 -2.92 -0.02 1.35 16 24 H 0.10 2.01 8.06 -2.91 -0.02 1.99 16 25 H 0.13 1.01 7.79 -2.38 -0.02 1.00 16 26 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.43 5.50 8.82 -92.71 -0.82 4.68 16 28 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 29 H 0.13 5.53 5.63 -2.91 -0.02 5.51 16 30 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.11 5.19 8.06 -2.91 -0.02 5.16 16 32 H 0.13 5.18 6.23 -2.91 -0.02 5.17 16 Total: -1.00 -78.78 285.91 5.16 -73.62 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.33 Total: 22.06 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 4.39 Total: -32.20 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.32 Total: -73.45 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.26 Total: -34.70 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -78.78 5.16 -73.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706018435.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.275 kcal (2) G-P(sol) polarization free energy of solvation -78.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds