Wall clock time and date at job start Mon Mar 30 2020 06:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00051 * 2 1 4 4 H 1.48502 * 109.46845 * 270.00373 * 3 2 1 5 5 H 1.48503 * 109.47298 * 29.99876 * 3 2 1 6 6 H 1.48499 * 109.47452 * 150.00139 * 3 2 1 7 7 C 1.37882 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00063 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.53400 * 59.89624 * 9 7 2 11 11 C 1.53124 * 109.50116 * 299.80605 * 9 7 2 12 12 C 1.53119 * 109.15841 * 297.71095 * 11 9 7 13 13 C 1.53040 * 109.28089 * 302.34776 * 12 11 9 14 14 N 1.46846 * 109.51964 * 59.17912 * 13 12 11 15 15 C 1.46846 * 111.19997 * 298.25655 * 14 13 12 16 16 H 1.08997 * 109.46419 * 301.72736 * 15 14 13 17 17 C 1.50704 * 109.45995 * 181.76032 * 15 14 13 18 18 C 1.38164 * 120.03146 * 340.00102 * 17 15 14 19 19 C 1.38244 * 120.05636 * 179.97438 * 18 17 15 20 20 C 1.38282 * 120.11015 * 0.02562 * 19 18 17 21 21 C 1.38126 * 120.05894 * 359.97438 * 20 19 18 22 22 C 1.38717 * 120.02431 * 159.72709 * 17 15 14 23 23 O 1.35896 * 120.05326 * 359.97438 * 22 17 15 24 24 H 0.96992 * 120.00139 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.52523 * 57.61728 * 11 9 7 26 26 H 1.08999 * 109.52008 * 177.81404 * 11 9 7 27 27 H 1.09004 * 109.50189 * 62.29271 * 12 11 9 28 28 H 1.09001 * 109.50740 * 182.36562 * 12 11 9 29 29 H 1.08996 * 109.46572 * 299.16374 * 13 12 11 30 30 H 1.09004 * 109.46207 * 179.19455 * 13 12 11 31 31 H 1.00904 * 110.99845 * 174.15792 * 14 13 12 32 32 H 1.07998 * 119.96775 * 359.97438 * 18 17 15 33 33 H 1.07999 * 119.94108 * 180.02562 * 19 18 17 34 34 H 1.08001 * 119.97185 * 180.02562 * 20 19 18 35 35 H 1.07996 * 120.02700 * 180.02562 * 21 20 19 36 36 H 0.96703 * 114.00224 * 90.00393 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6223 -2.5571 -0.8890 11 6 0.3746 -2.5835 1.2522 12 6 1.2699 -2.5620 2.4942 13 6 2.2632 -3.7240 2.4213 14 7 3.0780 -3.5974 1.2063 15 6 2.2448 -3.6630 -0.0011 16 1 1.6992 -4.6065 -0.0151 17 6 3.1229 -3.5728 -1.2226 18 6 4.3965 -3.0471 -1.1214 19 6 5.2027 -2.9646 -2.2414 20 6 4.7365 -3.4074 -3.4657 21 6 3.4640 -3.9338 -3.5723 22 6 2.6550 -4.0229 -2.4485 23 8 1.4049 -4.5461 -2.5494 24 1 -0.4850 0.8400 0.0004 25 1 -0.3057 -1.7323 1.2788 26 1 -0.1998 -3.5097 1.2333 27 1 1.8151 -1.6190 2.5335 28 1 0.6546 -2.6640 3.3882 29 1 1.7175 -4.6672 2.3960 30 1 2.9115 -3.7030 3.2973 31 1 3.8040 -4.2978 1.1831 32 1 4.7626 -2.7002 -0.1663 33 1 6.1981 -2.5537 -2.1600 34 1 5.3683 -3.3423 -4.3392 35 1 3.1006 -4.2799 -4.5286 36 1 0.7204 -3.8933 -2.7509 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709944908.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:33 Heat of formation + Delta-G solvation = -20.484794 kcal Electronic energy + Delta-G solvation = -18765.205039 eV Core-core repulsion = 16020.918221 eV Total energy + Delta-G solvation = -2744.286818 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.59760 -37.41083 -36.02033 -32.90215 -31.90930 -30.18955 -29.38231 -28.10331 -24.89334 -23.33982 -22.16184 -21.48371 -20.40720 -18.49747 -17.73494 -16.19189 -15.78780 -15.14991 -15.02759 -14.53635 -14.38102 -13.50449 -13.33565 -13.03066 -12.90225 -12.27157 -12.12723 -11.88737 -11.58265 -11.43873 -11.34897 -10.88580 -10.84281 -10.54473 -10.07340 -9.99456 -9.60806 -9.35002 -9.27652 -8.67947 -8.25322 -8.19034 -7.92431 -7.52642 -5.88284 -3.88157 1.81924 1.95298 3.36280 3.43247 3.47753 4.19257 4.53185 4.84526 4.91713 5.37124 5.43389 5.50266 5.56052 5.84176 5.85288 6.02542 6.12645 6.20951 6.30833 6.37465 6.50508 6.54716 6.65477 6.79092 6.85224 6.92421 7.03721 7.13886 7.34263 7.40561 7.47239 7.63881 7.90912 7.96539 8.14180 8.21401 8.23007 8.59186 9.14717 9.73054 11.18420 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.010731 C = 0.008694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.393193 B = 2608.588369 C = 3219.785742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.473 4.473 8 H 0.066 0.934 9 C 0.064 3.936 10 H 0.024 0.976 11 C -0.114 4.114 12 C -0.103 4.103 13 C 0.069 3.931 14 N -0.668 5.668 15 C 0.136 3.864 16 H 0.027 0.973 17 C -0.061 4.061 18 C -0.079 4.079 19 C -0.138 4.138 20 C -0.123 4.123 21 C -0.153 4.153 22 C 0.102 3.898 23 O -0.503 6.503 24 H 0.256 0.744 25 H 0.095 0.905 26 H 0.010 0.990 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.012 0.988 30 H 0.058 0.942 31 H 0.321 0.679 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.668 -6.813 -1.822 9.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.512 4.512 8 H 0.084 0.916 9 C 0.045 3.955 10 H 0.041 0.959 11 C -0.152 4.152 12 C -0.141 4.141 13 C -0.060 4.060 14 N -0.298 5.298 15 C 0.027 3.973 16 H 0.045 0.955 17 C -0.062 4.062 18 C -0.097 4.097 19 C -0.156 4.156 20 C -0.142 4.142 21 C -0.171 4.171 22 C 0.057 3.943 23 O -0.314 6.314 24 H 0.066 0.934 25 H 0.114 0.886 26 H 0.029 0.971 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 5.793 -6.524 -1.665 8.883 hybrid contribution -0.098 0.548 -0.201 0.592 sum 5.695 -5.976 -1.867 8.464 Atomic orbital electron populations 1.69860 1.05766 1.25957 1.52504 1.24926 0.94716 0.98732 0.96122 0.86717 0.80046 0.84160 0.77843 1.21118 1.21666 1.19943 1.21131 0.93408 0.89326 1.47313 0.91590 1.18682 0.91217 0.91608 0.93968 0.95854 1.21614 0.98453 0.99741 0.95356 1.21443 0.96653 0.98735 0.97253 1.21825 0.95266 0.97043 0.91857 1.60200 1.14460 1.53547 1.01617 1.20485 0.92635 0.98570 0.85620 0.95477 1.20194 0.95174 0.96044 0.94814 1.21008 0.92902 0.96705 0.99066 1.21108 0.99875 1.01511 0.93113 1.20817 0.95546 1.00316 0.97472 1.21206 0.95563 1.02663 0.97693 1.18283 0.86183 0.97580 0.92241 1.84683 1.15453 1.37708 1.93521 0.93413 0.88649 0.97087 0.90416 0.94550 0.96985 0.92383 0.86241 0.84578 0.86699 0.86750 0.86437 0.75347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.12 11.32 55.43 0.63 -24.50 16 2 C 0.05 1.46 5.30 -17.82 -0.09 1.36 16 3 Si 0.88 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.47 -12.28 6.48 -34.44 -0.22 -12.50 16 8 H 0.07 1.74 6.10 -52.49 -0.32 1.42 16 9 C 0.06 1.52 2.13 -91.69 -0.20 1.32 16 10 H 0.02 0.60 7.70 -51.93 -0.40 0.20 16 11 C -0.11 -2.64 5.32 -26.61 -0.14 -2.78 16 12 C -0.10 -2.14 5.84 -26.65 -0.16 -2.29 16 13 C 0.07 1.25 6.55 -3.83 -0.03 1.23 16 14 N -0.67 -12.58 4.82 -107.99 -0.52 -13.10 16 15 C 0.14 2.80 1.98 -68.88 -0.14 2.66 16 16 H 0.03 0.58 7.84 -51.93 -0.41 0.17 16 17 C -0.06 -1.20 4.42 -104.47 -0.46 -1.66 16 18 C -0.08 -1.44 7.87 -39.61 -0.31 -1.75 16 19 C -0.14 -2.22 10.04 -39.56 -0.40 -2.62 16 20 C -0.12 -1.90 10.04 -39.61 -0.40 -2.29 16 21 C -0.15 -2.52 9.99 -39.43 -0.39 -2.91 16 22 C 0.10 1.90 6.68 -39.22 -0.26 1.64 16 23 O -0.50 -8.98 12.68 -19.41 -0.25 -9.23 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.10 2.49 6.04 -51.93 -0.31 2.17 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.08 1.80 7.35 -51.93 -0.38 1.42 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.32 5.30 8.49 -39.29 -0.33 4.96 16 32 H 0.14 2.50 6.92 -52.49 -0.36 2.14 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.39 6.01 8.67 45.56 0.39 6.41 16 LS Contribution 286.49 15.07 4.32 4.32 Total: -1.00 -28.62 286.49 -8.26 -36.88 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -4.22 Total: 9.83 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -3.20 Total: -20.59 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.11 Total: -37.60 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.25 Total: -9.23 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.62 -8.26 -36.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709944908.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.394 kcal (2) G-P(sol) polarization free energy of solvation -28.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds