Wall clock time and date at job start Mon Mar 30 2020 06:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00051 * 2 1 4 4 H 1.48502 * 109.46845 * 270.00373 * 3 2 1 5 5 H 1.48503 * 109.47298 * 29.99876 * 3 2 1 6 6 H 1.48499 * 109.47452 * 150.00139 * 3 2 1 7 7 C 1.37882 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00063 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.53400 * 59.89624 * 9 7 2 11 11 C 1.53124 * 109.50116 * 299.80605 * 9 7 2 12 12 C 1.53119 * 109.15841 * 297.71095 * 11 9 7 13 13 C 1.53040 * 109.28089 * 302.34776 * 12 11 9 14 14 N 1.46846 * 109.51964 * 59.17912 * 13 12 11 15 15 C 1.46846 * 111.19997 * 298.25655 * 14 13 12 16 16 H 1.08997 * 109.46419 * 301.72736 * 15 14 13 17 17 C 1.50704 * 109.45995 * 181.76032 * 15 14 13 18 18 C 1.38164 * 120.03146 * 340.00102 * 17 15 14 19 19 C 1.38244 * 120.05636 * 179.97438 * 18 17 15 20 20 C 1.38282 * 120.11015 * 0.02562 * 19 18 17 21 21 C 1.38126 * 120.05894 * 359.97438 * 20 19 18 22 22 C 1.38717 * 120.02431 * 159.72709 * 17 15 14 23 23 O 1.35896 * 120.05326 * 359.97438 * 22 17 15 24 24 H 0.96992 * 120.00139 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.52523 * 57.61728 * 11 9 7 26 26 H 1.08999 * 109.52008 * 177.81404 * 11 9 7 27 27 H 1.09004 * 109.50189 * 62.29271 * 12 11 9 28 28 H 1.09001 * 109.50740 * 182.36562 * 12 11 9 29 29 H 1.08996 * 109.46572 * 299.16374 * 13 12 11 30 30 H 1.09004 * 109.46207 * 179.19455 * 13 12 11 31 31 H 1.00904 * 110.99845 * 174.15792 * 14 13 12 32 32 H 1.07998 * 119.96775 * 359.97438 * 18 17 15 33 33 H 1.07999 * 119.94108 * 180.02562 * 19 18 17 34 34 H 1.08001 * 119.97185 * 180.02562 * 20 19 18 35 35 H 1.07996 * 120.02700 * 180.02562 * 21 20 19 36 36 H 0.96703 * 114.00224 * 90.00393 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6223 -2.5571 -0.8890 11 6 0.3746 -2.5835 1.2522 12 6 1.2699 -2.5620 2.4942 13 6 2.2632 -3.7240 2.4213 14 7 3.0780 -3.5974 1.2063 15 6 2.2448 -3.6630 -0.0011 16 1 1.6992 -4.6065 -0.0151 17 6 3.1229 -3.5728 -1.2226 18 6 4.3965 -3.0471 -1.1214 19 6 5.2027 -2.9646 -2.2414 20 6 4.7365 -3.4074 -3.4657 21 6 3.4640 -3.9338 -3.5723 22 6 2.6550 -4.0229 -2.4485 23 8 1.4049 -4.5461 -2.5494 24 1 -0.4850 0.8400 0.0004 25 1 -0.3057 -1.7323 1.2788 26 1 -0.1998 -3.5097 1.2333 27 1 1.8151 -1.6190 2.5335 28 1 0.6546 -2.6640 3.3882 29 1 1.7175 -4.6672 2.3960 30 1 2.9115 -3.7030 3.2973 31 1 3.8040 -4.2978 1.1831 32 1 4.7626 -2.7002 -0.1663 33 1 6.1981 -2.5537 -2.1600 34 1 5.3683 -3.3423 -4.3392 35 1 3.1006 -4.2799 -4.5286 36 1 0.7204 -3.8933 -2.7509 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709944908.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:32 Heat of formation + Delta-G solvation = -39.034949 kcal Electronic energy + Delta-G solvation = -18766.009434 eV Core-core repulsion = 16020.918221 eV Total energy + Delta-G solvation = -2745.091213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.02400 -38.98301 -37.36366 -34.82072 -33.41127 -31.99193 -30.71462 -29.62208 -26.85051 -24.87423 -23.67309 -22.99952 -21.88057 -20.28102 -19.10984 -17.74725 -17.58371 -16.65576 -16.51067 -16.30834 -15.84707 -14.97858 -14.80412 -14.73260 -14.47150 -13.91356 -13.86623 -13.40993 -13.21826 -12.93229 -12.80541 -12.72634 -12.43163 -12.28112 -11.91895 -11.50044 -11.43635 -11.12951 -10.93320 -10.56359 -10.26230 -9.55176 -9.31451 -9.05275 -7.94165 -5.98212 0.49083 0.62827 1.42209 1.45148 1.53511 2.52341 2.87237 3.32854 3.43347 3.56618 4.05001 4.21557 4.30680 4.33937 4.40648 4.55709 4.68814 4.71226 4.80201 4.87001 4.93080 5.08741 5.12163 5.13223 5.30222 5.50130 5.56146 5.64802 5.72341 5.76217 5.80347 5.94873 6.11213 6.16532 6.37770 6.59932 6.78557 6.87365 7.08937 7.64695 9.11177 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.010731 C = 0.008694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.393193 B = 2608.588369 C = 3219.785742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.934 3.066 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.465 4.465 8 H 0.062 0.938 9 C 0.064 3.936 10 H -0.007 1.007 11 C -0.113 4.113 12 C -0.098 4.098 13 C 0.072 3.928 14 N -0.673 5.673 15 C 0.149 3.851 16 H 0.016 0.984 17 C -0.089 4.089 18 C -0.091 4.091 19 C -0.138 4.138 20 C -0.116 4.116 21 C -0.157 4.157 22 C 0.080 3.920 23 O -0.511 6.511 24 H 0.252 0.748 25 H 0.062 0.938 26 H 0.017 0.983 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.022 0.978 30 H 0.087 0.913 31 H 0.338 0.662 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.799 -7.267 -2.203 10.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.189 4.189 3 Si 0.763 3.237 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.503 4.503 8 H 0.080 0.920 9 C 0.045 3.955 10 H 0.011 0.989 11 C -0.152 4.152 12 C -0.136 4.136 13 C -0.057 4.057 14 N -0.304 5.304 15 C 0.040 3.960 16 H 0.033 0.967 17 C -0.090 4.090 18 C -0.109 4.109 19 C -0.156 4.156 20 C -0.134 4.134 21 C -0.175 4.175 22 C 0.035 3.965 23 O -0.323 6.323 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.105 0.895 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.157 0.843 36 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 7.943 -6.989 -2.043 10.775 hybrid contribution -0.750 0.654 -0.131 1.004 sum 7.193 -6.335 -2.174 9.828 Atomic orbital electron populations 1.70000 1.06841 1.26124 1.53929 1.25540 0.95336 1.01408 0.96604 0.85904 0.79097 0.81130 0.77613 1.21072 1.21920 1.19384 1.21287 0.93186 0.90142 1.45730 0.91988 1.18576 0.91612 0.92423 0.92857 0.98867 1.21522 0.98455 0.98520 0.96665 1.21356 0.96863 0.98697 0.96700 1.21829 0.95233 0.96029 0.92610 1.60127 1.14652 1.54472 1.01178 1.20140 0.92394 0.96258 0.87246 0.96676 1.20234 0.95929 0.98101 0.94737 1.21076 0.92848 0.97115 0.99888 1.21470 1.00815 1.00705 0.92594 1.21268 0.95256 0.98344 0.98491 1.21520 0.95884 1.02250 0.97837 1.18592 0.86620 0.98394 0.92897 1.84649 1.15773 1.38195 1.93635 0.93853 0.91929 0.96475 0.93113 0.92564 0.95977 0.89467 0.84374 0.85066 0.83779 0.83057 0.84341 0.74699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.15 11.32 21.45 0.24 -52.90 16 2 C 0.01 0.38 5.30 84.66 0.45 0.83 16 3 Si 0.93 44.17 29.54 68.60 2.03 46.20 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.46 -24.36 6.48 25.60 0.17 -24.20 16 8 H 0.06 3.26 6.10 -2.91 -0.02 3.25 16 9 C 0.06 3.11 2.13 -11.49 -0.02 3.08 16 10 H -0.01 -0.36 7.70 -2.39 -0.02 -0.38 16 11 C -0.11 -5.37 5.32 30.68 0.16 -5.21 16 12 C -0.10 -4.03 5.84 30.65 0.18 -3.85 16 13 C 0.07 2.47 6.55 86.33 0.57 3.04 16 14 N -0.67 -24.55 4.82 -495.57 -2.39 -26.93 16 15 C 0.15 6.14 1.98 44.19 0.09 6.23 16 16 H 0.02 0.66 7.84 -2.39 -0.02 0.64 16 17 C -0.09 -3.45 4.42 -19.77 -0.09 -3.54 16 18 C -0.09 -3.20 7.87 22.25 0.18 -3.02 16 19 C -0.14 -4.03 10.04 22.28 0.22 -3.80 16 20 C -0.12 -3.15 10.04 22.25 0.22 -2.93 16 21 C -0.16 -4.82 9.99 22.37 0.22 -4.60 16 22 C 0.08 2.93 6.68 22.51 0.15 3.08 16 23 O -0.51 -18.44 12.68 -92.39 -1.17 -19.61 16 24 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 25 H 0.06 3.38 6.04 -2.39 -0.01 3.36 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 2.34 7.35 -2.39 -0.02 2.32 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 31 H 0.34 10.55 8.49 -89.69 -0.76 9.79 16 32 H 0.13 4.65 6.92 -2.91 -0.02 4.63 16 33 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 34 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 36 H 0.40 12.69 8.67 -74.06 -0.64 12.05 16 Total: -1.00 -61.72 286.49 0.90 -60.83 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.31 Total: 27.31 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 2.49 Total: -34.88 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.15 Total: -79.84 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -1.17 Total: -19.61 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -61.72 0.90 -60.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709944908.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.791 kcal (2) G-P(sol) polarization free energy of solvation -61.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds