Wall clock time and date at job start Mon Mar 30 2020 06:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00410 * 2 1 4 4 H 1.48499 * 109.47315 * 240.00230 * 3 2 1 5 5 H 1.48501 * 109.46928 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47211 * 119.99945 * 3 2 1 7 7 C 1.37876 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00238 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99894 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50598 * 54.75599 * 9 7 2 11 11 C 1.53120 * 109.53507 * 294.65617 * 9 7 2 12 12 C 1.53114 * 109.16381 * 182.38295 * 11 9 7 13 13 C 1.53041 * 109.27666 * 57.65430 * 12 11 9 14 14 N 1.46846 * 109.52304 * 300.82397 * 13 12 11 15 15 C 1.46843 * 111.20012 * 61.74146 * 14 13 12 16 16 H 1.08998 * 109.46532 * 58.26479 * 15 14 13 17 17 C 1.50710 * 109.46192 * 178.24354 * 15 14 13 18 18 C 1.38159 * 120.02699 * 103.00126 * 17 15 14 19 19 C 1.38243 * 120.05486 * 179.76606 * 18 17 15 20 20 C 1.38291 * 120.10990 * 0.50914 * 19 18 17 21 21 C 1.38124 * 120.05402 * 359.74680 * 20 19 18 22 22 C 1.38708 * 120.02339 * 283.27520 * 17 15 14 23 23 O 1.35895 * 120.06128 * 0.02562 * 22 17 15 24 24 H 0.97005 * 119.99910 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.52121 * 302.28912 * 11 9 7 26 26 H 1.09006 * 109.51974 * 62.41721 * 11 9 7 27 27 H 1.08998 * 109.50463 * 177.59580 * 12 11 9 28 28 H 1.09005 * 109.50585 * 297.71759 * 12 11 9 29 29 H 1.09004 * 109.46302 * 180.80434 * 13 12 11 30 30 H 1.09005 * 109.46181 * 60.83446 * 13 12 11 31 31 H 1.00909 * 110.99788 * 297.63940 * 14 13 12 32 32 H 1.08003 * 119.97675 * 0.02562 * 18 17 15 33 33 H 1.08002 * 119.94995 * 180.25170 * 19 18 17 34 34 H 1.07999 * 119.97633 * 179.76303 * 20 19 18 35 35 H 1.08004 * 120.02320 * 180.02562 * 21 20 19 36 36 H 0.96705 * 114.00154 * 89.99888 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.5558 -2.5181 -0.8388 11 6 0.4730 -2.6412 1.3118 12 6 -0.2412 -3.9955 1.3282 13 6 0.7908 -5.1131 1.1605 14 7 1.5075 -4.9328 -0.1085 15 6 2.2396 -3.6601 -0.1287 16 1 2.9429 -3.6324 0.7036 17 6 2.9937 -3.5351 -1.4276 18 6 2.5124 -2.7157 -2.4303 19 6 3.2062 -2.5969 -3.6202 20 6 4.3777 -3.3058 -3.8139 21 6 4.8602 -4.1304 -2.8164 22 6 4.1685 -4.2472 -1.6193 23 8 4.6408 -5.0586 -0.6368 24 1 -0.4850 0.8401 0.0004 25 1 1.1637 -2.5834 2.1531 26 1 -0.2619 -1.8398 1.3879 27 1 -0.7621 -4.1207 2.2775 28 1 -0.9598 -4.0379 0.5097 29 1 0.2839 -6.0781 1.1575 30 1 1.5010 -5.0786 1.9867 31 1 0.8762 -4.9994 -0.8929 32 1 1.5956 -2.1641 -2.2831 33 1 2.8306 -1.9527 -4.4014 34 1 4.9160 -3.2143 -4.7457 35 1 5.7755 -4.6835 -2.9681 36 1 4.3144 -5.9676 -0.6864 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709944909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:36 Heat of formation + Delta-G solvation = -28.016545 kcal Electronic energy + Delta-G solvation = -18598.992349 eV Core-core repulsion = 15854.378930 eV Total energy + Delta-G solvation = -2744.613419 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.59358 -37.57382 -35.98588 -33.15459 -31.93820 -30.24183 -29.24105 -28.15271 -24.98932 -23.18358 -22.21325 -21.44143 -20.30007 -19.08360 -17.62943 -16.36732 -15.86018 -15.08271 -14.85738 -14.60817 -14.18191 -13.72569 -13.60655 -13.23117 -12.86584 -12.51532 -12.10696 -11.72735 -11.36370 -11.25351 -11.01906 -10.88045 -10.85667 -10.72935 -10.27924 -10.15432 -9.92324 -9.64902 -9.50666 -8.82525 -8.38933 -8.19043 -7.96712 -7.50810 -6.02628 -4.06679 1.85938 1.98503 3.31360 3.35438 3.40125 4.24361 4.42674 4.83486 5.04773 5.27545 5.43372 5.45544 5.63033 5.75130 5.85291 5.93165 6.01704 6.22577 6.32919 6.35449 6.42772 6.47951 6.61046 6.75518 6.83835 6.90798 7.00250 7.11463 7.29799 7.36944 7.50762 7.57935 7.71567 7.77414 7.99363 8.10550 8.24662 8.41315 8.96188 9.57096 11.03461 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.011157 C = 0.007571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.205123 B = 2509.063725 C = 3697.259285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.885 3.115 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.503 4.503 8 H 0.055 0.945 9 C 0.025 3.975 10 H 0.032 0.968 11 C -0.108 4.108 12 C -0.158 4.158 13 C 0.063 3.937 14 N -0.685 5.685 15 C 0.131 3.869 16 H 0.080 0.920 17 C -0.074 4.074 18 C -0.066 4.066 19 C -0.143 4.143 20 C -0.117 4.117 21 C -0.166 4.166 22 C 0.113 3.887 23 O -0.496 6.496 24 H 0.260 0.740 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.331 0.669 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.992 -8.782 -3.755 10.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.713 3.287 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.006 3.994 10 H 0.050 0.950 11 C -0.146 4.146 12 C -0.198 4.198 13 C -0.066 4.066 14 N -0.312 5.312 15 C 0.023 3.977 16 H 0.098 0.902 17 C -0.075 4.075 18 C -0.084 4.084 19 C -0.162 4.162 20 C -0.135 4.135 21 C -0.184 4.184 22 C 0.068 3.932 23 O -0.305 6.305 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.162 0.838 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.693 -8.536 -3.346 9.885 hybrid contribution -0.479 1.348 -0.169 1.440 sum 3.214 -7.189 -3.515 8.623 Atomic orbital electron populations 1.69900 1.05815 1.26542 1.50696 1.24913 0.94740 0.98873 0.95161 0.86759 0.79719 0.83434 0.78800 1.20177 1.21423 1.20326 1.21034 0.92842 0.90149 1.50191 0.92698 1.19354 0.93339 0.92596 0.94152 0.95041 1.21622 0.99582 0.94366 0.99050 1.22351 0.98588 0.98502 1.00327 1.21908 0.95206 0.96882 0.92640 1.60849 1.31013 1.35141 1.04213 1.20538 0.95207 0.88436 0.93568 0.90235 1.20142 0.94046 0.97105 0.96202 1.21437 1.00683 0.95186 0.91129 1.21143 0.96217 1.00610 0.98190 1.20855 0.96709 0.97612 0.98371 1.21208 1.01051 1.02683 0.93481 1.18350 0.92761 0.94689 0.87429 1.84729 1.71510 1.24349 1.49953 0.93021 0.94533 0.89966 0.93482 0.93036 0.92264 0.91699 0.85322 0.83788 0.86673 0.86837 0.86621 0.76029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.59 11.75 55.43 0.65 -23.93 16 2 C 0.06 1.73 5.33 -17.82 -0.10 1.63 16 3 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.50 -13.19 6.54 -34.44 -0.23 -13.41 16 8 H 0.05 1.50 7.57 -52.49 -0.40 1.10 16 9 C 0.03 0.59 1.14 -91.69 -0.10 0.48 16 10 H 0.03 0.80 6.73 -51.93 -0.35 0.45 16 11 C -0.11 -2.45 5.09 -26.61 -0.14 -2.58 16 12 C -0.16 -2.91 6.08 -26.65 -0.16 -3.07 16 13 C 0.06 1.04 6.55 -3.83 -0.03 1.02 16 14 N -0.68 -11.85 6.49 -107.98 -0.70 -12.55 16 15 C 0.13 2.67 1.76 -68.87 -0.12 2.55 16 16 H 0.08 1.80 7.96 -51.93 -0.41 1.39 16 17 C -0.07 -1.46 4.82 -104.47 -0.50 -1.96 16 18 C -0.07 -1.31 8.28 -39.61 -0.33 -1.64 16 19 C -0.14 -2.47 10.04 -39.56 -0.40 -2.87 16 20 C -0.12 -1.83 10.04 -39.60 -0.40 -2.23 16 21 C -0.17 -2.69 9.99 -39.43 -0.39 -3.08 16 22 C 0.11 2.04 6.68 -39.22 -0.26 1.77 16 23 O -0.50 -8.34 12.80 -19.41 -0.25 -8.59 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 2.10 6.57 -51.93 -0.34 1.76 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.33 5.61 8.79 -39.29 -0.35 5.27 16 32 H 0.14 3.17 5.54 -52.48 -0.29 2.88 16 33 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.38 4.92 9.06 45.56 0.41 5.33 16 LS Contribution 289.66 15.07 4.37 4.37 Total: -1.00 -27.80 289.66 -8.35 -36.15 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -4.24 Total: 11.75 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -3.15 Total: -23.38 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.05 Total: -36.49 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.25 Total: -8.59 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.80 -8.35 -36.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709944909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.133 kcal (2) G-P(sol) polarization free energy of solvation -27.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds