Wall clock time and date at job start Mon Mar 30 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00410 * 2 1 4 4 H 1.48499 * 109.47315 * 240.00230 * 3 2 1 5 5 H 1.48501 * 109.46928 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47211 * 119.99945 * 3 2 1 7 7 C 1.37876 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00238 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99894 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50598 * 54.75599 * 9 7 2 11 11 C 1.53120 * 109.53507 * 294.65617 * 9 7 2 12 12 C 1.53114 * 109.16381 * 182.38295 * 11 9 7 13 13 C 1.53041 * 109.27666 * 57.65430 * 12 11 9 14 14 N 1.46846 * 109.52304 * 300.82397 * 13 12 11 15 15 C 1.46843 * 111.20012 * 61.74146 * 14 13 12 16 16 H 1.08998 * 109.46532 * 58.26479 * 15 14 13 17 17 C 1.50710 * 109.46192 * 178.24354 * 15 14 13 18 18 C 1.38159 * 120.02699 * 103.00126 * 17 15 14 19 19 C 1.38243 * 120.05486 * 179.76606 * 18 17 15 20 20 C 1.38291 * 120.10990 * 0.50914 * 19 18 17 21 21 C 1.38124 * 120.05402 * 359.74680 * 20 19 18 22 22 C 1.38708 * 120.02339 * 283.27520 * 17 15 14 23 23 O 1.35895 * 120.06128 * 0.02562 * 22 17 15 24 24 H 0.97005 * 119.99910 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.52121 * 302.28912 * 11 9 7 26 26 H 1.09006 * 109.51974 * 62.41721 * 11 9 7 27 27 H 1.08998 * 109.50463 * 177.59580 * 12 11 9 28 28 H 1.09005 * 109.50585 * 297.71759 * 12 11 9 29 29 H 1.09004 * 109.46302 * 180.80434 * 13 12 11 30 30 H 1.09005 * 109.46181 * 60.83446 * 13 12 11 31 31 H 1.00909 * 110.99788 * 297.63940 * 14 13 12 32 32 H 1.08003 * 119.97675 * 0.02562 * 18 17 15 33 33 H 1.08002 * 119.94995 * 180.25170 * 19 18 17 34 34 H 1.07999 * 119.97633 * 179.76303 * 20 19 18 35 35 H 1.08004 * 120.02320 * 180.02562 * 21 20 19 36 36 H 0.96705 * 114.00154 * 89.99888 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.5558 -2.5181 -0.8388 11 6 0.4730 -2.6412 1.3118 12 6 -0.2412 -3.9955 1.3282 13 6 0.7908 -5.1131 1.1605 14 7 1.5075 -4.9328 -0.1085 15 6 2.2396 -3.6601 -0.1287 16 1 2.9429 -3.6324 0.7036 17 6 2.9937 -3.5351 -1.4276 18 6 2.5124 -2.7157 -2.4303 19 6 3.2062 -2.5969 -3.6202 20 6 4.3777 -3.3058 -3.8139 21 6 4.8602 -4.1304 -2.8164 22 6 4.1685 -4.2472 -1.6193 23 8 4.6408 -5.0586 -0.6368 24 1 -0.4850 0.8401 0.0004 25 1 1.1637 -2.5834 2.1531 26 1 -0.2619 -1.8398 1.3879 27 1 -0.7621 -4.1207 2.2775 28 1 -0.9598 -4.0379 0.5097 29 1 0.2839 -6.0781 1.1575 30 1 1.5010 -5.0786 1.9867 31 1 0.8762 -4.9994 -0.8929 32 1 1.5956 -2.1641 -2.2831 33 1 2.8306 -1.9527 -4.4014 34 1 4.9160 -3.2143 -4.7457 35 1 5.7755 -4.6835 -2.9681 36 1 4.3144 -5.9676 -0.6864 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709944909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:35 Heat of formation + Delta-G solvation = -46.919088 kcal Electronic energy + Delta-G solvation = -18599.812025 eV Core-core repulsion = 15854.378930 eV Total energy + Delta-G solvation = -2745.433095 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04340 -39.09200 -37.30883 -35.06610 -33.45047 -32.00362 -30.62199 -29.66645 -26.88879 -24.68959 -23.78256 -22.93113 -21.78180 -20.74428 -18.97065 -18.40563 -17.26967 -16.72906 -16.32577 -16.22575 -15.58573 -15.31455 -15.19451 -14.75176 -14.51968 -14.00002 -13.77876 -13.17087 -12.88731 -12.85222 -12.70602 -12.69878 -12.53411 -12.36853 -12.02538 -11.85382 -11.61464 -11.31671 -11.10741 -10.70135 -10.41811 -9.59392 -9.33427 -9.07088 -8.08494 -6.18423 0.50966 0.61835 1.36961 1.37805 1.44949 2.41382 2.89381 3.19146 3.54143 3.59945 3.98794 4.19884 4.22566 4.34606 4.43109 4.47922 4.59581 4.72327 4.80057 4.85442 4.90009 4.98090 5.16464 5.22497 5.30118 5.34639 5.45811 5.59982 5.62564 5.76201 5.84216 5.93196 5.94482 6.13295 6.16822 6.45366 6.61027 6.89732 7.04979 7.46796 8.94988 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.011157 C = 0.007571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.205123 B = 2509.063725 C = 3697.259285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.021 3.979 3 Si 0.935 3.065 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.506 4.506 8 H 0.038 0.962 9 C 0.031 3.969 10 H 0.007 0.993 11 C -0.106 4.106 12 C -0.149 4.149 13 C 0.067 3.933 14 N -0.670 5.670 15 C 0.147 3.853 16 H 0.055 0.945 17 C -0.098 4.098 18 C -0.088 4.088 19 C -0.149 4.149 20 C -0.106 4.106 21 C -0.161 4.161 22 C 0.106 3.894 23 O -0.504 6.504 24 H 0.259 0.741 25 H 0.023 0.977 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.335 0.665 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 -10.232 -4.699 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.011 3.989 10 H 0.025 0.975 11 C -0.145 4.145 12 C -0.189 4.189 13 C -0.063 4.063 14 N -0.298 5.298 15 C 0.038 3.962 16 H 0.073 0.927 17 C -0.099 4.099 18 C -0.107 4.107 19 C -0.167 4.167 20 C -0.124 4.124 21 C -0.179 4.179 22 C 0.062 3.938 23 O -0.315 6.315 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.128 0.872 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 5.076 -10.009 -4.291 12.015 hybrid contribution -0.881 1.760 0.107 1.971 sum 4.195 -8.249 -4.184 10.156 Atomic orbital electron populations 1.70010 1.06779 1.26886 1.51789 1.25508 0.95418 1.01495 0.95304 0.85958 0.78711 0.80484 0.78653 1.19821 1.20951 1.20339 1.21197 0.92135 0.91766 1.49407 0.94334 1.19242 0.93389 0.92925 0.93352 0.97470 1.21491 0.98699 0.96129 0.98162 1.22256 0.98791 0.96504 1.01313 1.21994 0.94644 0.97629 0.92018 1.60832 1.31138 1.32889 1.04924 1.20150 0.94159 0.88414 0.93465 0.92688 1.20136 0.95348 0.98565 0.95845 1.21228 1.00373 0.96183 0.92911 1.21373 0.96762 1.01070 0.97518 1.21259 0.95681 0.95854 0.99628 1.21555 1.01553 1.02351 0.92474 1.18456 0.92258 0.94764 0.88367 1.84685 1.71435 1.25506 1.49921 0.93231 0.95800 0.93389 0.91585 0.93257 0.88596 0.91828 0.84817 0.87174 0.85024 0.82950 0.83651 0.74025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.38 11.75 21.45 0.25 -52.13 16 2 C 0.02 1.19 5.33 84.66 0.45 1.64 16 3 Si 0.94 44.41 29.54 68.60 2.03 46.43 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 7 C -0.51 -27.58 6.54 25.60 0.17 -27.41 16 8 H 0.04 2.18 7.57 -2.91 -0.02 2.16 16 9 C 0.03 1.49 1.14 -11.49 -0.01 1.48 16 10 H 0.01 0.39 6.73 -2.39 -0.02 0.37 16 11 C -0.11 -4.99 5.09 30.67 0.16 -4.83 16 12 C -0.15 -5.41 6.08 30.65 0.19 -5.22 16 13 C 0.07 2.07 6.55 86.33 0.57 2.64 16 14 N -0.67 -22.62 6.49 -495.54 -3.22 -25.84 16 15 C 0.15 6.11 1.76 44.20 0.08 6.19 16 16 H 0.05 2.54 7.96 -2.39 -0.02 2.52 16 17 C -0.10 -3.88 4.82 -19.77 -0.10 -3.97 16 18 C -0.09 -3.56 8.28 22.25 0.18 -3.38 16 19 C -0.15 -4.95 10.04 22.28 0.22 -4.72 16 20 C -0.11 -2.96 10.04 22.26 0.22 -2.74 16 21 C -0.16 -4.70 9.99 22.37 0.22 -4.47 16 22 C 0.11 3.68 6.68 22.51 0.15 3.83 16 23 O -0.50 -16.00 12.80 -92.37 -1.18 -17.18 16 24 H 0.26 14.29 8.31 -92.70 -0.77 13.51 16 25 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 2.55 6.57 -2.38 -0.02 2.54 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.34 11.10 8.79 -89.69 -0.79 10.32 16 32 H 0.11 5.14 5.54 -2.91 -0.02 5.13 16 33 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 34 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 36 H 0.40 9.35 9.06 -74.05 -0.67 8.68 16 Total: -1.00 -61.81 289.66 0.02 -61.80 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.37 Total: 27.90 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 2.50 Total: -40.98 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -2.96 Total: -77.97 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -1.18 Total: -17.18 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -61.81 0.02 -61.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709944909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.876 kcal (2) G-P(sol) polarization free energy of solvation -61.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds