Wall clock time and date at job start Mon Mar 30 2020 06:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99907 * 2 1 4 4 H 1.48499 * 109.47124 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47011 * 120.00414 * 3 2 1 6 6 H 1.48501 * 109.47292 * 240.00179 * 3 2 1 7 7 C 1.37874 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00090 * 187.10128 * 7 2 1 9 9 C 1.50703 * 120.00107 * 7.09840 * 7 2 1 10 10 H 1.09000 * 109.50256 * 30.52435 * 9 7 2 11 11 C 1.53122 * 109.50302 * 270.40568 * 9 7 2 12 12 C 1.53118 * 109.16219 * 297.71474 * 11 9 7 13 13 C 1.53042 * 109.27777 * 302.34467 * 12 11 9 14 14 N 1.46845 * 109.52054 * 59.17933 * 13 12 11 15 15 C 1.46854 * 111.19901 * 298.25633 * 14 13 12 16 16 H 1.08998 * 109.46010 * 301.72610 * 15 14 13 17 17 C 1.50702 * 109.45115 * 181.75436 * 15 14 13 18 18 C 1.38263 * 119.94383 * 323.90595 * 17 15 14 19 19 C 1.38149 * 120.04934 * 179.72619 * 18 17 15 20 20 C 1.38731 * 119.94765 * 0.57206 * 19 18 17 21 21 O 1.35898 * 120.05628 * 179.68605 * 20 19 18 22 22 C 1.38735 * 119.88598 * 359.69766 * 20 19 18 23 23 C 1.38138 * 119.94383 * 0.02562 * 22 20 19 24 24 H 0.96996 * 119.99586 * 175.32106 * 1 2 3 25 25 H 1.09007 * 109.52091 * 57.61615 * 11 9 7 26 26 H 1.08999 * 109.52336 * 177.80358 * 11 9 7 27 27 H 1.08992 * 109.50611 * 182.40355 * 12 11 9 28 28 H 1.09002 * 109.50394 * 62.28355 * 12 11 9 29 29 H 1.08999 * 109.45970 * 299.16621 * 13 12 11 30 30 H 1.08999 * 109.45991 * 179.19542 * 13 12 11 31 31 H 1.00902 * 111.00242 * 62.35697 * 14 13 12 32 32 H 1.07998 * 119.97666 * 359.97438 * 18 17 15 33 33 H 1.08008 * 120.02555 * 180.29567 * 19 18 17 34 34 H 0.96701 * 113.99647 * 270.01789 * 21 20 19 35 35 H 1.08000 * 120.02367 * 180.02562 * 22 20 19 36 36 H 1.08005 * 119.97464 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0784 -1.1976 0.1151 9 6 1.2598 -2.4941 -0.1624 10 1 0.3722 -2.3313 -0.7738 11 6 0.8439 -3.0198 1.2143 12 6 2.0989 -3.3017 2.0448 13 6 2.9822 -4.3059 1.3007 14 7 3.3536 -3.7562 -0.0093 15 6 2.1673 -3.5216 -0.8425 16 1 1.6235 -4.4574 -0.9717 17 6 2.5955 -2.9995 -2.1898 18 6 3.6779 -2.1447 -2.2865 19 6 4.0758 -1.6692 -3.5210 20 6 3.3811 -2.0407 -4.6630 21 8 3.7667 -1.5692 -5.8778 22 6 2.2919 -2.8941 -4.5626 23 6 1.9015 -3.3713 -3.3264 24 1 -0.4849 -0.8372 -0.0685 25 1 0.2326 -2.2723 1.7202 26 1 0.2715 -3.9397 1.0952 27 1 1.8107 -3.7165 3.0106 28 1 2.6509 -2.3741 2.1966 29 1 2.4345 -5.2379 1.1614 30 1 3.8835 -4.4979 1.8828 31 1 3.8961 -2.9116 0.0935 32 1 4.2152 -1.8516 -1.3966 33 1 4.9244 -1.0053 -3.5966 34 1 3.3427 -0.7374 -6.1295 35 1 1.7497 -3.1851 -5.4501 36 1 1.0534 -4.0354 -3.2476 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709946096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:41 Heat of formation + Delta-G solvation = -30.654289 kcal Electronic energy + Delta-G solvation = -18527.847869 eV Core-core repulsion = 15783.120068 eV Total energy + Delta-G solvation = -2744.727800 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.57429 -38.17029 -36.00614 -33.10736 -31.45219 -30.54421 -29.96227 -27.68063 -24.66276 -23.29254 -22.44603 -21.68590 -20.47253 -19.42134 -17.99055 -16.39985 -15.96143 -15.22328 -14.93338 -14.27761 -14.15762 -13.75091 -13.60211 -13.32883 -12.91332 -12.73813 -12.57686 -11.89890 -11.55860 -11.34127 -11.23370 -10.87743 -10.81054 -10.63760 -10.35175 -10.16235 -9.97819 -9.92740 -9.55202 -8.56389 -8.40964 -8.26269 -7.99466 -7.39973 -6.39969 -4.08846 1.82994 1.95782 3.37334 3.39595 3.56538 4.18488 4.46910 4.68929 4.99374 5.33172 5.38220 5.44826 5.58242 5.62040 5.87720 5.95267 5.98283 6.04455 6.20977 6.26178 6.28051 6.37377 6.42580 6.57776 6.69866 6.84173 6.92860 6.96394 7.04318 7.20182 7.27555 7.31504 7.41314 7.77240 8.02076 8.05711 8.19214 8.34921 8.81800 9.61046 10.99469 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.010565 C = 0.007723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.141127 B = 2649.724181 C = 3624.856651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.026 3.974 3 Si 1.056 2.944 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.580 4.580 8 H 0.048 0.952 9 C 0.006 3.994 10 H 0.036 0.964 11 C -0.106 4.106 12 C -0.143 4.143 13 C 0.063 3.937 14 N -0.679 5.679 15 C 0.132 3.868 16 H 0.062 0.938 17 C -0.034 4.034 18 C -0.062 4.062 19 C -0.149 4.149 20 C 0.080 3.920 21 O -0.506 6.506 22 C -0.149 4.149 23 C -0.110 4.110 24 H 0.270 0.730 25 H 0.054 0.946 26 H 0.024 0.976 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.343 0.657 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.382 0.618 35 H 0.118 0.882 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.748 -4.623 -3.671 7.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.179 4.179 3 Si 0.885 3.115 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.619 4.619 8 H 0.066 0.934 9 C -0.014 4.014 10 H 0.054 0.946 11 C -0.144 4.144 12 C -0.182 4.182 13 C -0.067 4.067 14 N -0.310 5.310 15 C 0.022 3.978 16 H 0.080 0.920 17 C -0.034 4.034 18 C -0.081 4.081 19 C -0.168 4.168 20 C 0.036 3.964 21 O -0.315 6.315 22 C -0.168 4.168 23 C -0.129 4.129 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.163 0.837 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.237 0.763 35 H 0.136 0.864 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.043 -4.105 -3.889 7.577 hybrid contribution -0.627 -0.269 0.423 0.803 sum 4.416 -4.375 -3.466 7.117 Atomic orbital electron populations 1.70798 1.06881 1.31065 1.45868 1.25617 0.96435 1.02210 0.93655 0.83711 0.75167 0.76057 0.76551 1.20939 1.21573 1.21284 1.21659 0.94246 0.91235 1.54710 0.93354 1.19481 0.95776 0.94336 0.91823 0.94632 1.21654 0.95823 0.97838 0.99131 1.22074 0.98559 1.00006 0.97605 1.21871 0.97874 0.97128 0.89799 1.60984 1.20889 1.35263 1.13884 1.20492 0.91077 0.96900 0.89318 0.92030 1.19704 0.94141 0.95328 0.94266 1.20787 0.96114 0.94922 0.96245 1.21314 1.01207 1.02033 0.92236 1.18346 0.95308 0.98480 0.84231 1.84782 1.69555 1.43548 1.33634 1.21148 0.97185 1.00717 0.97725 1.20766 0.99708 1.00730 0.91674 0.91867 0.92750 0.95764 0.94033 0.91102 0.92314 0.92061 0.83681 0.85737 0.86329 0.76310 0.86429 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.12 13.63 55.43 0.76 -25.37 16 2 C 0.03 0.68 5.45 -17.82 -0.10 0.59 16 3 Si 1.06 24.14 29.91 -169.99 -5.08 19.05 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.58 -14.29 5.36 -34.44 -0.18 -14.47 16 8 H 0.05 1.17 5.17 -52.49 -0.27 0.90 16 9 C 0.01 0.13 1.81 -91.69 -0.17 -0.03 16 10 H 0.04 0.91 6.77 -51.93 -0.35 0.55 16 11 C -0.11 -2.26 5.48 -26.61 -0.15 -2.41 16 12 C -0.14 -2.69 5.82 -26.65 -0.16 -2.84 16 13 C 0.06 1.07 6.55 -3.83 -0.03 1.05 16 14 N -0.68 -12.58 6.26 -107.98 -0.68 -13.25 16 15 C 0.13 2.62 2.47 -68.87 -0.17 2.45 16 16 H 0.06 1.19 8.04 -51.93 -0.42 0.78 16 17 C -0.03 -0.67 4.73 -104.60 -0.50 -1.16 16 18 C -0.06 -1.20 8.06 -39.60 -0.32 -1.52 16 19 C -0.15 -2.67 9.99 -39.43 -0.39 -3.07 16 20 C 0.08 1.38 6.70 -39.22 -0.26 1.12 16 21 O -0.51 -7.59 13.50 -19.42 -0.26 -7.85 16 22 C -0.15 -2.54 9.99 -39.43 -0.39 -2.93 16 23 C -0.11 -2.00 9.67 -39.61 -0.38 -2.38 16 24 H 0.27 7.74 6.70 -40.82 -0.27 7.46 16 25 H 0.05 1.29 8.14 -51.92 -0.42 0.86 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.46 7.35 -51.93 -0.38 1.08 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.34 6.55 5.35 -39.29 -0.21 6.34 16 32 H 0.12 2.38 5.41 -52.49 -0.28 2.10 16 33 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 34 H 0.38 4.00 9.06 45.56 0.41 4.41 16 35 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 285.46 15.07 4.30 4.30 Total: -1.00 -28.61 285.46 -8.11 -36.72 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -3.96 Total: 12.00 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -3.19 Total: -25.61 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.08 Total: -38.62 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.26 Total: -7.85 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.08 Total: 19.05 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.61 -8.11 -36.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709946096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.066 kcal (2) G-P(sol) polarization free energy of solvation -28.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds