Wall clock time and date at job start Mon Mar 30 2020 06:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99907 * 2 1 4 4 H 1.48499 * 109.47124 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47011 * 120.00414 * 3 2 1 6 6 H 1.48501 * 109.47292 * 240.00179 * 3 2 1 7 7 C 1.37874 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00090 * 187.10128 * 7 2 1 9 9 C 1.50703 * 120.00107 * 7.09840 * 7 2 1 10 10 H 1.09000 * 109.50256 * 30.52435 * 9 7 2 11 11 C 1.53122 * 109.50302 * 270.40568 * 9 7 2 12 12 C 1.53118 * 109.16219 * 297.71474 * 11 9 7 13 13 C 1.53042 * 109.27777 * 302.34467 * 12 11 9 14 14 N 1.46845 * 109.52054 * 59.17933 * 13 12 11 15 15 C 1.46854 * 111.19901 * 298.25633 * 14 13 12 16 16 H 1.08998 * 109.46010 * 301.72610 * 15 14 13 17 17 C 1.50702 * 109.45115 * 181.75436 * 15 14 13 18 18 C 1.38263 * 119.94383 * 323.90595 * 17 15 14 19 19 C 1.38149 * 120.04934 * 179.72619 * 18 17 15 20 20 C 1.38731 * 119.94765 * 0.57206 * 19 18 17 21 21 O 1.35898 * 120.05628 * 179.68605 * 20 19 18 22 22 C 1.38735 * 119.88598 * 359.69766 * 20 19 18 23 23 C 1.38138 * 119.94383 * 0.02562 * 22 20 19 24 24 H 0.96996 * 119.99586 * 175.32106 * 1 2 3 25 25 H 1.09007 * 109.52091 * 57.61615 * 11 9 7 26 26 H 1.08999 * 109.52336 * 177.80358 * 11 9 7 27 27 H 1.08992 * 109.50611 * 182.40355 * 12 11 9 28 28 H 1.09002 * 109.50394 * 62.28355 * 12 11 9 29 29 H 1.08999 * 109.45970 * 299.16621 * 13 12 11 30 30 H 1.08999 * 109.45991 * 179.19542 * 13 12 11 31 31 H 1.00902 * 111.00242 * 62.35697 * 14 13 12 32 32 H 1.07998 * 119.97666 * 359.97438 * 18 17 15 33 33 H 1.08008 * 120.02555 * 180.29567 * 19 18 17 34 34 H 0.96701 * 113.99647 * 270.01789 * 21 20 19 35 35 H 1.08000 * 120.02367 * 180.02562 * 22 20 19 36 36 H 1.08005 * 119.97464 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0784 -1.1976 0.1151 9 6 1.2598 -2.4941 -0.1624 10 1 0.3722 -2.3313 -0.7738 11 6 0.8439 -3.0198 1.2143 12 6 2.0989 -3.3017 2.0448 13 6 2.9822 -4.3059 1.3007 14 7 3.3536 -3.7562 -0.0093 15 6 2.1673 -3.5216 -0.8425 16 1 1.6235 -4.4574 -0.9717 17 6 2.5955 -2.9995 -2.1898 18 6 3.6779 -2.1447 -2.2865 19 6 4.0758 -1.6692 -3.5210 20 6 3.3811 -2.0407 -4.6630 21 8 3.7667 -1.5692 -5.8778 22 6 2.2919 -2.8941 -4.5626 23 6 1.9015 -3.3713 -3.3264 24 1 -0.4849 -0.8372 -0.0685 25 1 0.2326 -2.2723 1.7202 26 1 0.2715 -3.9397 1.0952 27 1 1.8107 -3.7165 3.0106 28 1 2.6509 -2.3741 2.1966 29 1 2.4345 -5.2379 1.1614 30 1 3.8835 -4.4979 1.8828 31 1 3.8961 -2.9116 0.0935 32 1 4.2152 -1.8516 -1.3966 33 1 4.9244 -1.0053 -3.5966 34 1 3.3427 -0.7374 -6.1295 35 1 1.7497 -3.1851 -5.4501 36 1 1.0534 -4.0354 -3.2476 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709946096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:41 Heat of formation + Delta-G solvation = -49.667461 kcal Electronic energy + Delta-G solvation = -18528.672342 eV Core-core repulsion = 15783.120068 eV Total energy + Delta-G solvation = -2745.552273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.02698 -39.61805 -37.33237 -34.99690 -32.93975 -31.99887 -31.58767 -29.17121 -26.59013 -24.79237 -23.90912 -23.21678 -21.92080 -21.13879 -19.26451 -18.25084 -17.40121 -16.66535 -16.29328 -15.85434 -15.73614 -15.51140 -15.12661 -14.97436 -14.34366 -14.27300 -14.00672 -13.40609 -13.10988 -12.89852 -12.74732 -12.62467 -12.42193 -12.24579 -11.98826 -11.96144 -11.59929 -11.25293 -11.21259 -10.50425 -10.23131 -9.78220 -9.42076 -8.92827 -8.48707 -6.15072 0.44841 0.56805 1.52259 1.58522 1.74677 2.59511 2.81947 3.31243 3.43160 3.53495 3.98280 4.08447 4.14222 4.16644 4.35904 4.44870 4.54244 4.57753 4.61379 4.79115 4.81993 4.91923 5.02461 5.10730 5.18714 5.23839 5.29634 5.46161 5.49333 5.55760 5.64719 5.83376 6.02156 6.11159 6.31954 6.33836 6.59646 6.75741 6.90679 7.60758 8.91222 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.010565 C = 0.007723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.141127 B = 2649.724181 C = 3624.856651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.028 4.028 3 Si 1.094 2.906 4 H -0.296 1.296 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.559 4.559 8 H 0.054 0.946 9 C 0.005 3.995 10 H -0.001 1.001 11 C -0.104 4.104 12 C -0.136 4.136 13 C 0.065 3.935 14 N -0.675 5.675 15 C 0.141 3.859 16 H 0.066 0.934 17 C -0.060 4.060 18 C -0.077 4.077 19 C -0.159 4.159 20 C 0.084 3.916 21 O -0.507 6.507 22 C -0.152 4.152 23 C -0.120 4.120 24 H 0.256 0.744 25 H 0.020 0.980 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.340 0.660 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.405 0.595 35 H 0.142 0.858 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.365 -5.305 -4.273 9.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.226 4.226 3 Si 0.918 3.082 4 H -0.223 1.223 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.597 4.597 8 H 0.072 0.928 9 C -0.016 4.016 10 H 0.017 0.983 11 C -0.142 4.142 12 C -0.175 4.175 13 C -0.064 4.064 14 N -0.305 5.305 15 C 0.031 3.969 16 H 0.084 0.916 17 C -0.061 4.061 18 C -0.095 4.095 19 C -0.177 4.177 20 C 0.040 3.960 21 O -0.320 6.320 22 C -0.170 4.170 23 C -0.138 4.138 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.159 0.841 32 H 0.138 0.862 33 H 0.153 0.847 34 H 0.263 0.737 35 H 0.160 0.840 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.682 -4.796 -4.495 9.372 hybrid contribution -1.119 -0.108 0.536 1.245 sum 5.563 -4.903 -3.959 8.406 Atomic orbital electron populations 1.70907 1.08039 1.30229 1.49475 1.26745 0.96449 1.05568 0.93860 0.83214 0.74393 0.72745 0.77802 1.22277 1.19872 1.19532 1.21886 0.94409 0.91752 1.51703 0.92837 1.19461 0.94850 0.94890 0.92353 0.98252 1.21565 0.96957 0.97328 0.98394 1.22011 0.97166 0.99842 0.98510 1.21981 0.98801 0.96668 0.88987 1.61007 1.19995 1.34851 1.14615 1.20314 0.90919 0.95937 0.89703 0.91551 1.19818 0.95142 0.96577 0.94531 1.20840 0.96373 0.95455 0.96831 1.21541 1.01891 1.02279 0.92036 1.18443 0.94788 0.98007 0.84760 1.84724 1.69875 1.44996 1.32367 1.21433 0.97236 1.00197 0.98155 1.21011 0.99945 1.00997 0.91869 0.93366 0.96158 0.94345 0.91793 0.93162 0.91112 0.89360 0.84077 0.86166 0.84653 0.73728 0.84024 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.25 13.63 21.45 0.29 -55.96 16 2 C -0.03 -1.53 5.45 84.65 0.46 -1.07 16 3 Si 1.09 48.70 29.91 68.60 2.05 50.76 16 4 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.56 -27.71 5.36 25.60 0.14 -27.57 16 8 H 0.05 2.57 5.17 -2.91 -0.02 2.55 16 9 C 0.00 0.21 1.81 -11.49 -0.02 0.19 16 10 H 0.00 -0.04 6.77 -2.39 -0.02 -0.06 16 11 C -0.10 -4.46 5.48 30.67 0.17 -4.29 16 12 C -0.14 -4.91 5.82 30.65 0.18 -4.73 16 13 C 0.07 2.04 6.55 86.33 0.57 2.61 16 14 N -0.67 -23.83 6.26 -495.55 -3.10 -26.93 16 15 C 0.14 5.53 2.47 44.19 0.11 5.64 16 16 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 17 C -0.06 -2.32 4.73 -19.85 -0.09 -2.42 16 18 C -0.08 -2.87 8.06 22.25 0.18 -2.69 16 19 C -0.16 -5.41 9.99 22.37 0.22 -5.19 16 20 C 0.08 2.71 6.70 22.51 0.15 2.87 16 21 O -0.51 -13.70 13.50 -92.40 -1.25 -14.94 16 22 C -0.15 -4.86 9.99 22.36 0.22 -4.63 16 23 C -0.12 -4.21 9.67 22.25 0.22 -4.00 16 24 H 0.26 15.42 6.70 -92.71 -0.62 14.80 16 25 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 2.01 7.35 -2.39 -0.02 1.99 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.34 12.47 5.35 -89.69 -0.48 11.99 16 32 H 0.12 4.50 5.41 -2.91 -0.02 4.48 16 33 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.40 7.18 9.06 -74.06 -0.67 6.51 16 35 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 36 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -61.74 285.46 0.59 -61.16 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.10 Total: 31.22 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 2.50 Total: -45.29 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.81 Total: -82.89 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -1.25 Total: -14.94 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.05 Total: 50.76 kcal Total: -61.74 0.59 -61.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709946096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.488 kcal (2) G-P(sol) polarization free energy of solvation -61.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds