Wall clock time and date at job start Mon Mar 30 2020 06:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00294 * 2 1 4 4 H 1.48498 * 109.46979 * 270.00226 * 3 2 1 5 5 H 1.48508 * 109.46958 * 30.00008 * 3 2 1 6 6 H 1.48499 * 109.47330 * 149.99947 * 3 2 1 7 7 C 1.37874 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00171 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00270 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.53321 * 59.89546 * 9 7 2 11 11 C 1.53119 * 109.50212 * 299.80688 * 9 7 2 12 12 C 1.53121 * 109.16139 * 182.39996 * 11 9 7 13 13 C 1.53035 * 109.27676 * 57.65522 * 12 11 9 14 14 N 1.46847 * 109.52110 * 300.81861 * 13 12 11 15 15 C 1.46847 * 111.19798 * 61.74695 * 14 13 12 16 16 H 1.08997 * 109.46354 * 58.26123 * 15 14 13 17 17 C 1.50706 * 109.46151 * 178.24325 * 15 14 13 18 18 C 1.38263 * 119.94672 * 39.72084 * 17 15 14 19 19 C 1.38143 * 120.05579 * 179.72304 * 18 17 15 20 20 C 1.38733 * 119.94234 * 0.55395 * 19 18 17 21 21 O 1.35895 * 120.05657 * 179.74426 * 20 19 18 22 22 C 1.38737 * 119.89030 * 359.72143 * 20 19 18 23 23 C 1.38141 * 119.94079 * 0.02562 * 22 20 19 24 24 H 0.97003 * 119.99414 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.52978 * 62.49628 * 11 9 7 26 26 H 1.09000 * 109.52570 * 302.30539 * 11 9 7 27 27 H 1.08998 * 109.50541 * 297.71159 * 12 11 9 28 28 H 1.09005 * 109.53704 * 177.60700 * 12 11 9 29 29 H 1.09001 * 109.46470 * 180.80464 * 13 12 11 30 30 H 1.08997 * 109.45922 * 60.82976 * 13 12 11 31 31 H 1.00905 * 111.00068 * 185.84139 * 14 13 12 32 32 H 1.08001 * 119.97275 * 0.02562 * 18 17 15 33 33 H 1.07992 * 120.02923 * 180.27343 * 19 18 17 34 34 H 0.96699 * 114.00709 * 269.97677 * 21 20 19 35 35 H 1.07994 * 120.02848 * 180.02562 * 22 20 19 36 36 H 1.07997 * 119.97174 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6222 -2.5569 -0.8890 11 6 0.3745 -2.5834 1.2522 12 6 -0.3412 -3.9369 1.2747 13 6 0.6987 -5.0590 1.2372 14 7 1.5109 -4.9348 0.0201 15 6 2.2447 -3.6630 -0.0011 16 1 2.8820 -3.5966 0.8806 17 6 3.0964 -3.5953 -1.2426 18 6 2.6033 -4.0685 -2.4445 19 6 3.3799 -4.0024 -3.5851 20 6 4.6599 -3.4711 -3.5214 21 8 5.4277 -3.4097 -4.6409 22 6 5.1545 -3.0021 -2.3130 23 6 4.3719 -3.0657 -1.1764 24 1 -0.4849 0.8401 0.0004 25 1 -0.3634 -1.7814 1.2352 26 1 0.9986 -2.4865 2.1406 27 1 -0.9950 -4.0173 0.4063 28 1 -0.9340 -4.0206 2.1856 29 1 0.1920 -6.0240 1.2387 30 1 1.3434 -4.9860 2.1130 31 1 2.1408 -5.7173 -0.0757 32 1 1.6083 -4.4858 -2.4927 33 1 2.9926 -4.3681 -4.5245 34 1 5.9744 -4.1939 -4.7866 35 1 6.1504 -2.5877 -2.2610 36 1 4.7563 -2.7005 -0.2356 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709946101.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:44 Heat of formation + Delta-G solvation = -27.451319 kcal Electronic energy + Delta-G solvation = -18238.391904 eV Core-core repulsion = 15493.802995 eV Total energy + Delta-G solvation = -2744.588909 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.46986 -37.90606 -35.97574 -33.13434 -31.46972 -30.51237 -30.21653 -27.78576 -24.89846 -23.16287 -22.20161 -21.63656 -20.42860 -18.54748 -18.01948 -16.70684 -15.79060 -15.11680 -15.05455 -14.56553 -14.36505 -13.62895 -13.36269 -12.97314 -12.89783 -12.61211 -12.38545 -12.23140 -11.54524 -11.48639 -11.29270 -10.92244 -10.69175 -10.64116 -10.15704 -10.00875 -9.86362 -9.56017 -9.23449 -8.72188 -8.42352 -8.29829 -7.91570 -7.71002 -5.95942 -4.00625 1.78176 1.91542 3.33224 3.39740 3.42121 4.16898 4.45135 4.57902 4.81546 5.35521 5.41175 5.45195 5.53647 5.71356 5.83933 6.01296 6.05793 6.09797 6.21993 6.29905 6.36087 6.57356 6.63076 6.68184 6.79022 6.90087 6.92684 7.16577 7.22627 7.32863 7.40681 7.62246 7.78131 7.95820 7.99451 8.09300 8.15261 8.47045 9.01787 9.63387 11.10361 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.010159 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.566068 B = 2755.562605 C = 4136.067162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.068 3.932 10 H 0.036 0.964 11 C -0.112 4.112 12 C -0.120 4.120 13 C 0.066 3.934 14 N -0.686 5.686 15 C 0.130 3.870 16 H 0.033 0.967 17 C -0.044 4.044 18 C -0.082 4.082 19 C -0.151 4.151 20 C 0.081 3.919 21 O -0.503 6.503 22 C -0.150 4.150 23 C -0.092 4.092 24 H 0.259 0.741 25 H 0.093 0.907 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.020 0.980 31 H 0.326 0.674 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.379 0.621 35 H 0.118 0.882 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.933 -10.096 -1.646 11.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.049 3.951 10 H 0.054 0.946 11 C -0.150 4.150 12 C -0.158 4.158 13 C -0.063 4.063 14 N -0.316 5.316 15 C 0.021 3.979 16 H 0.051 0.949 17 C -0.045 4.045 18 C -0.100 4.100 19 C -0.169 4.169 20 C 0.037 3.963 21 O -0.312 6.312 22 C -0.168 4.168 23 C -0.111 4.111 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.233 0.767 35 H 0.136 0.864 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.981 -9.169 -2.074 10.638 hybrid contribution 1.404 0.478 0.673 1.629 sum 6.385 -8.691 -1.401 10.875 Atomic orbital electron populations 1.69885 1.05803 1.26260 1.50871 1.24894 0.94772 0.98850 0.95199 0.86686 0.79882 0.83872 0.78148 1.20703 1.21332 1.20004 1.21167 0.92958 0.90410 1.50281 0.92505 1.18661 0.91763 0.89698 0.94947 0.94623 1.21687 1.00061 0.94937 0.98346 1.21696 0.97319 0.96539 1.00202 1.21847 0.95621 0.98678 0.90185 1.60365 1.28158 1.03998 1.39065 1.20728 0.94168 0.90811 0.92193 0.94861 1.19854 0.93098 0.95825 0.95677 1.20905 0.99609 0.98384 0.91121 1.21314 0.94698 1.02082 0.98824 1.18398 0.91172 1.01266 0.85492 1.84848 1.59405 1.44480 1.42450 1.21231 1.00554 1.02873 0.92158 1.20889 0.93850 0.98364 0.97983 0.93117 0.88904 0.95096 0.92110 0.93589 0.92261 0.96202 0.85734 0.85069 0.86310 0.76684 0.86353 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 11.36 55.43 0.63 -24.70 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -13.65 7.99 -34.44 -0.28 -13.92 16 8 H 0.06 1.50 6.24 -52.49 -0.33 1.17 16 9 C 0.07 1.65 1.77 -91.69 -0.16 1.49 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.11 -2.60 5.03 -26.61 -0.13 -2.74 16 12 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 13 C 0.07 1.10 6.55 -3.84 -0.03 1.07 16 14 N -0.69 -11.92 5.73 -107.99 -0.62 -12.54 16 15 C 0.13 2.62 2.12 -68.87 -0.15 2.47 16 16 H 0.03 0.69 8.00 -51.93 -0.42 0.28 16 17 C -0.04 -0.85 4.30 -104.60 -0.45 -1.30 16 18 C -0.08 -1.49 9.32 -39.61 -0.37 -1.86 16 19 C -0.15 -2.51 9.99 -39.43 -0.39 -2.91 16 20 C 0.08 1.33 6.71 -39.21 -0.26 1.07 16 21 O -0.50 -7.24 13.50 -19.41 -0.26 -7.50 16 22 C -0.15 -2.52 9.99 -39.43 -0.39 -2.91 16 23 C -0.09 -1.69 8.46 -39.61 -0.34 -2.02 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.33 4.91 8.78 -39.29 -0.35 4.56 16 32 H 0.13 2.35 7.70 -52.49 -0.40 1.95 16 33 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.38 3.34 9.06 45.56 0.41 3.75 16 35 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.12 2.13 7.83 -52.49 -0.41 1.72 16 LS Contribution 292.13 15.07 4.40 4.40 Total: -1.00 -29.70 292.13 -8.40 -38.10 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.33 Total: 8.01 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -3.20 Total: -22.32 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.01 Total: -37.25 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.26 Total: -7.50 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.70 -8.40 -38.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709946101.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.648 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds