Wall clock time and date at job start Mon Mar 30 2020 06:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00294 * 2 1 4 4 H 1.48498 * 109.46979 * 270.00226 * 3 2 1 5 5 H 1.48508 * 109.46958 * 30.00008 * 3 2 1 6 6 H 1.48499 * 109.47330 * 149.99947 * 3 2 1 7 7 C 1.37874 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00171 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00270 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.53321 * 59.89546 * 9 7 2 11 11 C 1.53119 * 109.50212 * 299.80688 * 9 7 2 12 12 C 1.53121 * 109.16139 * 182.39996 * 11 9 7 13 13 C 1.53035 * 109.27676 * 57.65522 * 12 11 9 14 14 N 1.46847 * 109.52110 * 300.81861 * 13 12 11 15 15 C 1.46847 * 111.19798 * 61.74695 * 14 13 12 16 16 H 1.08997 * 109.46354 * 58.26123 * 15 14 13 17 17 C 1.50706 * 109.46151 * 178.24325 * 15 14 13 18 18 C 1.38263 * 119.94672 * 39.72084 * 17 15 14 19 19 C 1.38143 * 120.05579 * 179.72304 * 18 17 15 20 20 C 1.38733 * 119.94234 * 0.55395 * 19 18 17 21 21 O 1.35895 * 120.05657 * 179.74426 * 20 19 18 22 22 C 1.38737 * 119.89030 * 359.72143 * 20 19 18 23 23 C 1.38141 * 119.94079 * 0.02562 * 22 20 19 24 24 H 0.97003 * 119.99414 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.52978 * 62.49628 * 11 9 7 26 26 H 1.09000 * 109.52570 * 302.30539 * 11 9 7 27 27 H 1.08998 * 109.50541 * 297.71159 * 12 11 9 28 28 H 1.09005 * 109.53704 * 177.60700 * 12 11 9 29 29 H 1.09001 * 109.46470 * 180.80464 * 13 12 11 30 30 H 1.08997 * 109.45922 * 60.82976 * 13 12 11 31 31 H 1.00905 * 111.00068 * 185.84139 * 14 13 12 32 32 H 1.08001 * 119.97275 * 0.02562 * 18 17 15 33 33 H 1.07992 * 120.02923 * 180.27343 * 19 18 17 34 34 H 0.96699 * 114.00709 * 269.97677 * 21 20 19 35 35 H 1.07994 * 120.02848 * 180.02562 * 22 20 19 36 36 H 1.07997 * 119.97174 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6222 -2.5569 -0.8890 11 6 0.3745 -2.5834 1.2522 12 6 -0.3412 -3.9369 1.2747 13 6 0.6987 -5.0590 1.2372 14 7 1.5109 -4.9348 0.0201 15 6 2.2447 -3.6630 -0.0011 16 1 2.8820 -3.5966 0.8806 17 6 3.0964 -3.5953 -1.2426 18 6 2.6033 -4.0685 -2.4445 19 6 3.3799 -4.0024 -3.5851 20 6 4.6599 -3.4711 -3.5214 21 8 5.4277 -3.4097 -4.6409 22 6 5.1545 -3.0021 -2.3130 23 6 4.3719 -3.0657 -1.1764 24 1 -0.4849 0.8401 0.0004 25 1 -0.3634 -1.7814 1.2352 26 1 0.9986 -2.4865 2.1406 27 1 -0.9950 -4.0173 0.4063 28 1 -0.9340 -4.0206 2.1856 29 1 0.1920 -6.0240 1.2387 30 1 1.3434 -4.9860 2.1130 31 1 2.1408 -5.7173 -0.0757 32 1 1.6083 -4.4858 -2.4927 33 1 2.9926 -4.3681 -4.5245 34 1 5.9744 -4.1939 -4.7866 35 1 6.1504 -2.5877 -2.2610 36 1 4.7563 -2.7005 -0.2356 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709946101.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:44 Heat of formation + Delta-G solvation = -47.619068 kcal Electronic energy + Delta-G solvation = -18239.266444 eV Core-core repulsion = 15493.802995 eV Total energy + Delta-G solvation = -2745.463448 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.85156 -39.35348 -37.28117 -35.07275 -32.96107 -32.11468 -31.74667 -29.29371 -26.80471 -24.66577 -23.57157 -23.30885 -21.88415 -20.23671 -19.24272 -18.56519 -17.37355 -16.57019 -16.49353 -16.25230 -15.82659 -15.07537 -14.82703 -14.70150 -14.32818 -14.25760 -14.05469 -13.75837 -13.02073 -12.93338 -12.82271 -12.74099 -12.55515 -12.37541 -11.81372 -11.71683 -11.43291 -11.26320 -10.93615 -10.62741 -10.37384 -9.76871 -9.29020 -9.16127 -8.05424 -6.15847 0.44766 0.56221 1.38054 1.40221 1.48022 2.43282 2.84655 3.23045 3.39650 3.40746 4.07730 4.09081 4.19954 4.30894 4.37497 4.50188 4.63198 4.66505 4.79849 4.85192 4.91413 5.07177 5.12672 5.18432 5.23718 5.39997 5.48025 5.54422 5.57413 5.68592 5.83146 5.97117 6.04195 6.16814 6.23083 6.49481 6.71734 6.95302 6.96439 7.50661 8.99503 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.010159 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.566068 B = 2755.562605 C = 4136.067162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.941 3.059 4 H -0.283 1.283 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.070 3.930 10 H -0.005 1.005 11 C -0.109 4.109 12 C -0.114 4.114 13 C 0.068 3.932 14 N -0.685 5.685 15 C 0.142 3.858 16 H 0.026 0.974 17 C -0.067 4.067 18 C -0.090 4.090 19 C -0.154 4.154 20 C 0.089 3.911 21 O -0.508 6.508 22 C -0.154 4.154 23 C -0.104 4.104 24 H 0.257 0.743 25 H 0.057 0.943 26 H 0.024 0.976 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.026 0.974 31 H 0.345 0.655 32 H 0.127 0.873 33 H 0.140 0.860 34 H 0.407 0.593 35 H 0.139 0.861 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.342 -11.236 -2.084 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.767 3.233 4 H -0.209 1.209 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.075 0.925 9 C 0.051 3.949 10 H 0.013 0.987 11 C -0.147 4.147 12 C -0.152 4.152 13 C -0.061 4.061 14 N -0.317 5.317 15 C 0.033 3.967 16 H 0.044 0.956 17 C -0.068 4.068 18 C -0.108 4.108 19 C -0.172 4.172 20 C 0.044 3.956 21 O -0.321 6.321 22 C -0.172 4.172 23 C -0.123 4.123 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.045 0.955 31 H 0.163 0.837 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.265 0.735 35 H 0.157 0.843 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.418 -10.345 -2.514 12.430 hybrid contribution 1.003 0.802 0.728 1.476 sum 7.421 -9.542 -1.786 12.219 Atomic orbital electron populations 1.70030 1.06995 1.26666 1.52055 1.25613 0.95513 1.01888 0.95414 0.85816 0.79117 0.80460 0.77881 1.20938 1.21027 1.19026 1.21539 0.93180 0.91713 1.49194 0.92495 1.18515 0.92091 0.90815 0.93464 0.98715 1.21527 0.99218 0.96497 0.97506 1.21615 0.97772 0.95033 1.00772 1.21879 0.95038 0.99095 0.90040 1.60265 1.28319 1.03479 1.39650 1.20360 0.93067 0.90595 0.92667 0.95648 1.19858 0.93684 0.97556 0.95661 1.20933 0.99694 0.98720 0.91453 1.21540 0.94744 1.01804 0.99133 1.18457 0.91288 0.99964 0.85868 1.84777 1.59594 1.46411 1.41277 1.21463 1.01319 1.02608 0.91817 1.20987 0.93902 0.98656 0.98741 0.93370 0.92453 0.95750 0.93315 0.91392 0.88777 0.95528 0.83690 0.85468 0.84198 0.73501 0.84288 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.94 11.36 21.45 0.24 -53.70 16 2 C 0.01 0.78 5.30 84.65 0.45 1.23 16 3 Si 0.94 44.75 29.54 68.60 2.03 46.77 16 4 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.52 -28.30 7.99 25.60 0.20 -28.09 16 8 H 0.06 3.04 6.24 -2.91 -0.02 3.02 16 9 C 0.07 3.49 1.77 -11.49 -0.02 3.47 16 10 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 11 C -0.11 -5.20 5.03 30.67 0.15 -5.04 16 12 C -0.11 -4.28 6.09 30.65 0.19 -4.10 16 13 C 0.07 2.13 6.55 86.33 0.57 2.70 16 14 N -0.69 -23.00 5.73 -495.57 -2.84 -25.84 16 15 C 0.14 5.75 2.12 44.19 0.09 5.84 16 16 H 0.03 1.06 8.00 -2.39 -0.02 1.04 16 17 C -0.07 -2.56 4.30 -19.85 -0.09 -2.65 16 18 C -0.09 -3.20 9.32 22.25 0.21 -2.99 16 19 C -0.15 -4.85 9.99 22.37 0.22 -4.63 16 20 C 0.09 2.71 6.71 22.51 0.15 2.86 16 21 O -0.51 -12.95 13.50 -92.37 -1.25 -14.19 16 22 C -0.15 -4.88 9.99 22.37 0.22 -4.65 16 23 C -0.10 -3.74 8.46 22.25 0.19 -3.55 16 24 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.06 3.12 6.17 -2.39 -0.01 3.11 16 26 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.34 9.66 8.78 -89.69 -0.79 8.87 16 32 H 0.13 4.55 7.70 -2.91 -0.02 4.53 16 33 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 34 H 0.41 5.64 9.06 -74.06 -0.67 4.97 16 35 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.12 4.20 7.83 -2.91 -0.02 4.18 16 Total: -1.00 -64.77 292.13 0.36 -64.42 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -0.37 Total: 22.13 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 2.54 Total: -39.59 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -2.60 Total: -79.54 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.25 Total: -14.19 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.77 0.36 -64.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709946101.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.798 kcal (2) G-P(sol) polarization free energy of solvation -64.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds