Wall clock time and date at job start Mon Mar 30 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00136 * 2 1 4 4 H 1.48499 * 109.47264 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47024 * 29.99599 * 3 2 1 6 6 H 1.48498 * 109.46956 * 149.99607 * 3 2 1 7 7 C 1.37879 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99791 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50804 * 305.28514 * 9 7 2 11 11 C 1.53113 * 109.50489 * 65.36667 * 9 7 2 12 12 C 1.53123 * 109.15980 * 62.28261 * 11 9 7 13 13 C 1.53035 * 109.31009 * 57.63669 * 12 11 9 14 14 N 1.46845 * 109.52280 * 300.88368 * 13 12 11 15 15 C 1.46841 * 111.23766 * 61.67880 * 14 13 12 16 16 H 1.09007 * 109.45948 * 58.29536 * 15 14 13 17 17 C 1.50699 * 109.46682 * 178.26294 * 15 14 13 18 18 C 1.38268 * 119.94399 * 213.12366 * 17 15 14 19 19 C 1.38139 * 120.05368 * 179.72510 * 18 17 15 20 20 C 1.38736 * 119.94211 * 0.54403 * 19 18 17 21 21 O 1.35904 * 120.05320 * 179.74771 * 20 19 18 22 22 C 1.38729 * 119.89197 * 359.72594 * 20 19 18 23 23 C 1.38145 * 119.94295 * 0.02562 * 22 20 19 24 24 H 0.97006 * 119.99712 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.52015 * 302.38239 * 11 9 7 26 26 H 1.08999 * 109.57910 * 182.22069 * 11 9 7 27 27 H 1.09002 * 109.50341 * 177.59548 * 12 11 9 28 28 H 1.09000 * 109.50348 * 297.67197 * 12 11 9 29 29 H 1.09004 * 109.46109 * 60.85957 * 13 12 11 30 30 H 1.09006 * 109.46292 * 180.81987 * 13 12 11 31 31 H 1.00902 * 110.96442 * 297.58278 * 14 13 12 32 32 H 1.07998 * 119.96894 * 359.97438 * 18 17 15 33 33 H 1.08001 * 120.03252 * 180.27398 * 19 18 17 34 34 H 0.96703 * 114.00401 * 269.97698 * 21 20 19 35 35 H 1.07995 * 120.02734 * 179.97438 * 22 20 19 36 36 H 1.07990 * 119.97314 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5547 -2.5174 0.8389 11 6 0.4749 -2.6413 -1.3117 12 6 1.4644 -2.6742 -2.4797 13 6 2.4476 -3.8294 -2.2777 14 7 3.1647 -3.6474 -1.0093 15 6 2.2397 -3.6599 0.1312 16 1 1.6930 -4.6029 0.1450 17 6 3.0199 -3.5133 1.4122 18 6 2.5807 -4.1407 2.5634 19 6 3.2971 -4.0125 3.7375 20 6 4.4520 -3.2442 3.7636 21 8 5.1558 -3.1123 4.9187 22 6 4.8875 -2.6111 2.6085 23 6 4.1703 -2.7466 1.4357 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1997 -1.7933 -1.4295 26 1 -0.1017 -3.5662 -1.2966 27 1 0.9206 -2.8182 -3.4134 28 1 2.0122 -1.7327 -2.5192 29 1 1.9005 -4.7719 -2.2530 30 1 3.1623 -3.8462 -3.1006 31 1 3.7114 -2.7994 -1.0221 32 1 1.6790 -4.7348 2.5436 33 1 2.9562 -4.5063 4.6354 34 1 4.8812 -2.3618 5.4632 35 1 5.7860 -2.0122 2.6265 36 1 4.5091 -2.2544 0.5362 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709946104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:47 Heat of formation + Delta-G solvation = -26.214221 kcal Electronic energy + Delta-G solvation = -18453.920164 eV Core-core repulsion = 15709.384899 eV Total energy + Delta-G solvation = -2744.535265 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.54989 -38.07080 -35.98023 -32.85332 -31.37047 -30.56706 -29.96560 -27.71671 -25.07677 -23.18967 -22.38936 -21.54726 -20.38431 -19.12546 -18.00973 -16.08919 -15.82393 -15.11290 -14.99734 -14.72564 -14.16350 -13.57251 -13.46459 -13.12479 -12.89138 -12.54949 -12.36971 -11.87066 -11.61032 -11.36781 -11.06808 -11.04000 -10.88785 -10.62921 -10.28570 -10.04622 -9.94976 -9.70939 -9.46857 -8.81230 -8.43966 -8.36627 -7.95532 -7.29493 -6.05856 -4.09856 1.82393 1.93854 3.24047 3.32251 3.34262 4.18026 4.37346 4.67318 5.06891 5.27006 5.39198 5.43704 5.64200 5.76338 5.95951 6.04495 6.08456 6.13197 6.27177 6.34631 6.45013 6.49269 6.58478 6.62045 6.85683 6.90928 6.92372 7.21595 7.26444 7.29681 7.37157 7.53586 7.71549 7.83883 7.99128 8.02868 8.22449 8.34066 8.90673 9.53653 11.01610 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.009660 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.717994 B = 2897.928266 C = 3781.797421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.025 3.975 10 H 0.033 0.967 11 C -0.106 4.106 12 C -0.143 4.143 13 C 0.063 3.937 14 N -0.680 5.680 15 C 0.125 3.875 16 H 0.065 0.935 17 C -0.033 4.033 18 C -0.108 4.108 19 C -0.147 4.147 20 C 0.078 3.922 21 O -0.506 6.506 22 C -0.148 4.148 23 C -0.072 4.072 24 H 0.259 0.741 25 H 0.083 0.917 26 H 0.017 0.983 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.342 0.658 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.382 0.618 35 H 0.118 0.882 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.849 -5.136 2.308 7.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.710 3.290 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.006 3.994 10 H 0.051 0.949 11 C -0.144 4.144 12 C -0.182 4.182 13 C -0.067 4.067 14 N -0.310 5.310 15 C 0.016 3.984 16 H 0.083 0.917 17 C -0.034 4.034 18 C -0.127 4.127 19 C -0.166 4.166 20 C 0.034 3.966 21 O -0.315 6.315 22 C -0.166 4.166 23 C -0.091 4.091 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.236 0.764 35 H 0.136 0.864 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.161 -6.190 2.160 8.343 hybrid contribution -0.386 2.464 0.129 2.498 sum 4.774 -3.725 2.289 6.474 Atomic orbital electron populations 1.69905 1.05870 1.26353 1.50499 1.24893 0.94709 0.98793 0.95202 0.86747 0.80094 0.84114 0.78040 1.20814 1.21359 1.19833 1.21069 0.92722 0.90166 1.50477 0.92297 1.19272 0.93473 0.92342 0.94354 0.94877 1.21519 0.97661 0.99466 0.95732 1.22093 0.98718 0.99488 0.97914 1.21876 0.95525 0.97774 0.91484 1.61002 1.24723 1.43258 1.02027 1.20591 0.92236 0.98886 0.86725 0.91732 1.19800 0.94168 0.94402 0.94999 1.20779 0.99400 1.00375 0.92144 1.21170 0.95057 1.01684 0.98655 1.18348 0.92467 0.99724 0.86058 1.84791 1.60962 1.53392 1.32366 1.21299 1.00924 1.01134 0.93288 1.20820 0.94274 0.96727 0.97243 0.93099 0.89868 0.96452 0.94384 0.91309 0.92422 0.92319 0.83869 0.86293 0.86390 0.76371 0.86380 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.42 11.72 55.43 0.65 -23.77 16 2 C 0.07 1.72 5.32 -17.82 -0.09 1.62 16 3 Si 0.88 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.51 -12.48 6.04 -34.44 -0.21 -12.69 16 8 H 0.06 1.41 4.43 -52.49 -0.23 1.18 16 9 C 0.03 0.58 2.03 -91.69 -0.19 0.40 16 10 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 11 C -0.11 -2.35 5.37 -26.61 -0.14 -2.49 16 12 C -0.14 -2.80 5.82 -26.65 -0.16 -2.95 16 13 C 0.06 1.10 6.56 -3.84 -0.03 1.08 16 14 N -0.68 -12.63 6.23 -107.99 -0.67 -13.30 16 15 C 0.13 2.48 2.46 -68.88 -0.17 2.31 16 16 H 0.06 1.25 8.06 -51.92 -0.42 0.83 16 17 C -0.03 -0.64 4.69 -104.60 -0.49 -1.13 16 18 C -0.11 -1.91 9.68 -39.61 -0.38 -2.30 16 19 C -0.15 -2.42 9.99 -39.43 -0.39 -2.82 16 20 C 0.08 1.30 6.71 -39.22 -0.26 1.04 16 21 O -0.51 -7.36 13.50 -19.44 -0.26 -7.62 16 22 C -0.15 -2.56 9.99 -39.43 -0.39 -2.96 16 23 C -0.07 -1.35 7.88 -39.60 -0.31 -1.67 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.08 2.11 6.47 -51.93 -0.34 1.77 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.47 7.35 -51.93 -0.38 1.09 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.34 6.51 5.58 -39.29 -0.22 6.29 16 32 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.38 3.79 9.06 45.56 0.41 4.21 16 35 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 36 H 0.13 2.31 5.28 -52.49 -0.28 2.04 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -27.91 284.27 -8.21 -36.12 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -3.97 Total: 11.36 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -3.22 Total: -22.55 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.02 Total: -37.07 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.26 Total: -7.62 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.91 -8.21 -36.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709946104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.909 kcal (2) G-P(sol) polarization free energy of solvation -27.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds