Wall clock time and date at job start Mon Mar 30 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00136 * 2 1 4 4 H 1.48499 * 109.47264 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47024 * 29.99599 * 3 2 1 6 6 H 1.48498 * 109.46956 * 149.99607 * 3 2 1 7 7 C 1.37879 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99791 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50804 * 305.28514 * 9 7 2 11 11 C 1.53113 * 109.50489 * 65.36667 * 9 7 2 12 12 C 1.53123 * 109.15980 * 62.28261 * 11 9 7 13 13 C 1.53035 * 109.31009 * 57.63669 * 12 11 9 14 14 N 1.46845 * 109.52280 * 300.88368 * 13 12 11 15 15 C 1.46841 * 111.23766 * 61.67880 * 14 13 12 16 16 H 1.09007 * 109.45948 * 58.29536 * 15 14 13 17 17 C 1.50699 * 109.46682 * 178.26294 * 15 14 13 18 18 C 1.38268 * 119.94399 * 213.12366 * 17 15 14 19 19 C 1.38139 * 120.05368 * 179.72510 * 18 17 15 20 20 C 1.38736 * 119.94211 * 0.54403 * 19 18 17 21 21 O 1.35904 * 120.05320 * 179.74771 * 20 19 18 22 22 C 1.38729 * 119.89197 * 359.72594 * 20 19 18 23 23 C 1.38145 * 119.94295 * 0.02562 * 22 20 19 24 24 H 0.97006 * 119.99712 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.52015 * 302.38239 * 11 9 7 26 26 H 1.08999 * 109.57910 * 182.22069 * 11 9 7 27 27 H 1.09002 * 109.50341 * 177.59548 * 12 11 9 28 28 H 1.09000 * 109.50348 * 297.67197 * 12 11 9 29 29 H 1.09004 * 109.46109 * 60.85957 * 13 12 11 30 30 H 1.09006 * 109.46292 * 180.81987 * 13 12 11 31 31 H 1.00902 * 110.96442 * 297.58278 * 14 13 12 32 32 H 1.07998 * 119.96894 * 359.97438 * 18 17 15 33 33 H 1.08001 * 120.03252 * 180.27398 * 19 18 17 34 34 H 0.96703 * 114.00401 * 269.97698 * 21 20 19 35 35 H 1.07995 * 120.02734 * 179.97438 * 22 20 19 36 36 H 1.07990 * 119.97314 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5547 -2.5174 0.8389 11 6 0.4749 -2.6413 -1.3117 12 6 1.4644 -2.6742 -2.4797 13 6 2.4476 -3.8294 -2.2777 14 7 3.1647 -3.6474 -1.0093 15 6 2.2397 -3.6599 0.1312 16 1 1.6930 -4.6029 0.1450 17 6 3.0199 -3.5133 1.4122 18 6 2.5807 -4.1407 2.5634 19 6 3.2971 -4.0125 3.7375 20 6 4.4520 -3.2442 3.7636 21 8 5.1558 -3.1123 4.9187 22 6 4.8875 -2.6111 2.6085 23 6 4.1703 -2.7466 1.4357 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1997 -1.7933 -1.4295 26 1 -0.1017 -3.5662 -1.2966 27 1 0.9206 -2.8182 -3.4134 28 1 2.0122 -1.7327 -2.5192 29 1 1.9005 -4.7719 -2.2530 30 1 3.1623 -3.8462 -3.1006 31 1 3.7114 -2.7994 -1.0221 32 1 1.6790 -4.7348 2.5436 33 1 2.9562 -4.5063 4.6354 34 1 4.8812 -2.3618 5.4632 35 1 5.7860 -2.0122 2.6265 36 1 4.5091 -2.2544 0.5362 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709946104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:47 Heat of formation + Delta-G solvation = -44.579911 kcal Electronic energy + Delta-G solvation = -18454.716560 eV Core-core repulsion = 15709.384899 eV Total energy + Delta-G solvation = -2745.331661 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.96361 -39.51136 -37.28454 -34.73839 -32.85391 -32.00515 -31.60220 -29.20056 -26.95019 -24.68295 -23.81441 -23.07995 -21.83526 -20.83760 -19.24567 -17.86932 -17.31959 -16.76748 -16.49351 -16.10738 -15.58779 -15.24631 -15.00274 -14.77163 -14.22017 -14.09558 -13.89352 -13.57318 -13.11570 -12.86939 -12.77314 -12.60418 -12.49666 -12.34661 -11.92953 -11.77865 -11.49642 -11.21550 -11.13901 -10.65345 -10.37873 -9.74433 -9.35298 -8.84635 -8.04931 -6.12463 0.48453 0.59313 1.38298 1.41901 1.48549 2.44140 2.85773 3.26757 3.45904 3.60441 4.05021 4.15304 4.19725 4.29610 4.52739 4.58135 4.61617 4.65172 4.74868 4.87760 4.94570 5.05313 5.09162 5.22498 5.24540 5.45412 5.48020 5.57877 5.59635 5.68139 5.84393 5.87183 6.01275 6.07094 6.33019 6.45521 6.68181 6.93776 6.96177 7.52884 9.01743 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.009660 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.717994 B = 2897.928266 C = 3781.797421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.935 3.065 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.495 4.495 8 H 0.066 0.934 9 C 0.026 3.974 10 H -0.007 1.007 11 C -0.105 4.105 12 C -0.135 4.135 13 C 0.066 3.934 14 N -0.674 5.674 15 C 0.136 3.864 16 H 0.068 0.932 17 C -0.059 4.059 18 C -0.117 4.117 19 C -0.149 4.149 20 C 0.083 3.917 21 O -0.508 6.508 22 C -0.157 4.157 23 C -0.085 4.085 24 H 0.254 0.746 25 H 0.046 0.954 26 H 0.027 0.973 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.339 0.661 32 H 0.130 0.870 33 H 0.143 0.857 34 H 0.405 0.595 35 H 0.135 0.865 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 -5.852 2.623 9.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.183 4.183 3 Si 0.762 3.238 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.533 4.533 8 H 0.084 0.916 9 C 0.006 3.994 10 H 0.011 0.989 11 C -0.143 4.143 12 C -0.174 4.174 13 C -0.063 4.063 14 N -0.303 5.303 15 C 0.026 3.974 16 H 0.087 0.913 17 C -0.059 4.059 18 C -0.135 4.135 19 C -0.167 4.167 20 C 0.039 3.961 21 O -0.320 6.320 22 C -0.175 4.175 23 C -0.104 4.104 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.160 0.840 34 H 0.263 0.737 35 H 0.153 0.847 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.797 -6.903 2.483 10.001 hybrid contribution -0.877 2.646 0.115 2.790 sum 5.919 -4.257 2.598 7.740 Atomic orbital electron populations 1.70052 1.07173 1.26491 1.52482 1.25567 0.95289 1.01710 0.95762 0.85899 0.79151 0.80812 0.77927 1.20573 1.22106 1.18913 1.21355 0.93088 0.90671 1.48224 0.91595 1.19209 0.93476 0.93482 0.93194 0.98885 1.21422 0.97854 0.98324 0.96705 1.22009 0.98454 0.99543 0.97438 1.21961 0.95589 0.97066 0.91719 1.61032 1.24267 1.42867 1.02162 1.20394 0.91791 0.97343 0.87917 0.91349 1.19862 0.94890 0.95986 0.95207 1.21010 0.99971 1.00373 0.92193 1.21442 0.94805 1.01414 0.99069 1.18444 0.92184 0.98888 0.86618 1.84732 1.60765 1.54745 1.31796 1.21515 1.01457 1.01474 0.93090 1.20867 0.94590 0.97101 0.97799 0.93660 0.93507 0.95469 0.92565 0.93460 0.91252 0.89636 0.84180 0.85182 0.83971 0.73745 0.84738 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.26 11.72 21.45 0.25 -52.01 16 2 C 0.01 0.77 5.32 84.66 0.45 1.22 16 3 Si 0.93 42.36 29.54 68.60 2.03 44.38 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.50 -24.57 6.04 25.60 0.15 -24.42 16 8 H 0.07 3.14 4.43 -2.91 -0.01 3.13 16 9 C 0.03 1.23 2.03 -11.49 -0.02 1.20 16 10 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 11 C -0.10 -4.72 5.37 30.67 0.16 -4.55 16 12 C -0.14 -5.16 5.82 30.65 0.18 -4.98 16 13 C 0.07 2.15 6.56 86.33 0.57 2.72 16 14 N -0.67 -23.99 6.23 -495.56 -3.09 -27.07 16 15 C 0.14 5.29 2.46 44.19 0.11 5.40 16 16 H 0.07 2.59 8.06 -2.38 -0.02 2.57 16 17 C -0.06 -2.22 4.69 -19.85 -0.09 -2.31 16 18 C -0.12 -3.99 9.68 22.25 0.22 -3.77 16 19 C -0.15 -4.58 9.99 22.37 0.22 -4.35 16 20 C 0.08 2.57 6.71 22.51 0.15 2.72 16 21 O -0.51 -13.20 13.50 -92.47 -1.25 -14.44 16 22 C -0.16 -5.14 9.99 22.37 0.22 -4.92 16 23 C -0.09 -3.09 7.88 22.25 0.18 -2.92 16 24 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 25 H 0.05 2.44 6.47 -2.39 -0.02 2.43 16 26 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.05 1.99 7.35 -2.39 -0.02 1.98 16 29 H 0.07 2.12 8.14 -2.38 -0.02 2.11 16 30 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.34 12.48 5.58 -89.69 -0.50 11.98 16 32 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 33 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.40 6.70 9.06 -74.06 -0.67 6.03 16 35 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.12 4.39 5.28 -2.92 -0.02 4.37 16 Total: -1.00 -59.76 284.27 0.37 -59.39 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: -0.07 Total: 28.72 kcal Atomic # 6 Polarization: -41.46 SS G_CDS: 2.49 Total: -38.97 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -2.84 Total: -79.08 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -1.25 Total: -14.44 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -59.76 0.37 -59.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709946104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.810 kcal (2) G-P(sol) polarization free energy of solvation -59.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds