Wall clock time and date at job start Mon Mar 30 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00324 * 2 1 4 4 H 1.48502 * 109.47254 * 239.99968 * 3 2 1 5 5 H 1.48500 * 109.46759 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47079 * 119.99419 * 3 2 1 7 7 C 1.37880 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99708 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00182 * 359.97438 * 7 2 1 10 10 H 1.08998 * 108.62081 * 301.80783 * 9 7 2 11 11 C 1.50985 * 108.75072 * 183.60064 * 9 7 2 12 12 C 1.54711 * 109.07601 * 147.02173 * 11 9 7 13 13 O 1.36616 * 110.79095 * 73.34604 * 12 11 9 14 14 C 1.43449 * 117.83864 * 298.95564 * 13 12 11 15 15 C 1.51048 * 107.55581 * 82.09057 * 14 13 12 16 16 H 1.08997 * 109.00925 * 26.47920 * 15 14 13 17 17 C 1.50706 * 109.05820 * 145.44283 * 15 14 13 18 18 C 1.38238 * 119.99776 * 262.05058 * 17 15 14 19 19 C 1.38234 * 119.99693 * 179.97438 * 18 17 15 20 20 C 1.38234 * 120.00240 * 0.02562 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 22 22 C 1.38234 * 120.00160 * 82.03275 * 17 15 14 23 23 N 1.47391 * 111.55601 * 265.97148 * 15 14 13 24 24 H 0.97003 * 120.00148 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.53669 * 266.89982 * 11 9 7 26 26 H 1.08994 * 109.53774 * 27.06361 * 11 9 7 27 27 H 1.09003 * 109.21297 * 193.68425 * 12 11 9 28 28 H 1.09000 * 109.21244 * 313.05073 * 12 11 9 29 29 H 1.08999 * 109.84364 * 322.58058 * 14 13 12 30 30 H 1.08996 * 109.83777 * 201.60451 * 14 13 12 31 31 H 1.08005 * 120.00103 * 359.97438 * 18 17 15 32 32 H 1.07999 * 119.99751 * 179.97438 * 19 18 17 33 33 H 1.08002 * 119.99744 * 179.97438 * 20 19 18 34 34 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 35 35 H 1.08000 * 120.00005 * 359.97438 * 22 17 15 36 36 H 1.00894 * 111.00587 * 275.10268 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6058 -2.5286 0.8775 11 6 2.2441 -3.6330 0.0886 12 6 1.6121 -4.7970 0.8882 13 8 0.6626 -5.4375 0.1436 14 6 -0.4713 -4.6760 -0.2947 15 6 -0.0605 -3.9210 -1.5369 16 1 0.7434 -4.4647 -2.0331 17 6 -1.2407 -3.8286 -2.4694 18 6 -1.3648 -4.7212 -3.5177 19 6 -2.4477 -4.6368 -4.3728 20 6 -3.4061 -3.6595 -4.1800 21 6 -3.2789 -2.7632 -3.1353 22 6 -2.1994 -2.8516 -2.2764 23 7 0.4058 -2.5605 -1.2143 24 1 -0.4850 0.8401 -0.0004 25 1 2.4975 -3.9753 -0.9148 26 1 3.1458 -3.2888 0.5949 27 1 2.3914 -5.5075 1.1639 28 1 1.1509 -4.4016 1.7932 29 1 -0.7685 -3.9734 0.4838 30 1 -1.2997 -5.3456 -0.5258 31 1 -0.6157 -5.4845 -3.6686 32 1 -2.5444 -5.3338 -5.1920 33 1 -4.2519 -3.5934 -4.8484 34 1 -4.0254 -1.9970 -2.9873 35 1 -2.1028 -2.1547 -1.4570 36 1 -0.3699 -1.9187 -1.1476 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709963229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:56 Heat of formation + Delta-G solvation = -14.555298 kcal Electronic energy + Delta-G solvation = -18367.811223 eV Core-core repulsion = 15623.781527 eV Total energy + Delta-G solvation = -2744.029696 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66136 -38.33816 -35.01595 -33.28810 -31.46650 -30.58109 -29.42360 -26.69975 -26.40906 -23.62763 -22.41496 -21.79461 -20.56591 -18.87304 -17.06327 -16.28394 -15.84325 -15.55291 -15.15310 -14.71031 -14.43843 -14.22731 -13.94066 -13.05363 -12.96810 -12.60721 -12.43283 -11.82113 -11.77145 -11.52796 -11.19484 -10.92812 -10.74228 -10.56269 -10.43315 -10.37590 -10.04387 -9.64960 -9.30524 -8.80069 -8.56817 -8.56430 -8.32059 -6.77968 -6.10635 -4.10588 1.71145 1.75485 3.30894 3.35368 3.38765 4.13414 4.32549 4.41443 5.09117 5.17559 5.22510 5.29882 5.46112 5.62453 5.71408 5.80574 5.83260 5.89421 5.93097 5.98522 6.04822 6.24808 6.33962 6.35451 6.56247 6.66427 6.77622 6.79437 6.87410 6.93452 7.12205 7.35598 7.46108 7.86312 8.02878 8.23730 8.61255 8.99820 9.03136 9.56511 11.01518 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.019375 B = 0.008415 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.797091 B = 3326.588317 C = 4445.350623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.501 4.501 8 H 0.058 0.942 9 C 0.213 3.787 10 H -0.004 1.004 11 C -0.151 4.151 12 C 0.068 3.932 13 O -0.389 6.389 14 C 0.046 3.954 15 C 0.091 3.909 16 H 0.082 0.918 17 C -0.064 4.064 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.133 4.133 21 C -0.119 4.119 22 C -0.107 4.107 23 N -0.678 5.678 24 H 0.263 0.737 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.032 0.968 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.840 -7.922 -3.810 10.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.107 3.893 10 H 0.014 0.986 11 C -0.190 4.190 12 C -0.009 4.009 13 O -0.308 6.308 14 C -0.032 4.032 15 C -0.019 4.019 16 H 0.100 0.900 17 C -0.065 4.065 18 C -0.134 4.134 19 C -0.143 4.143 20 C -0.152 4.152 21 C -0.137 4.137 22 C -0.126 4.126 23 N -0.317 5.317 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.147 0.853 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.441 -8.002 -4.230 10.082 hybrid contribution -0.269 1.275 0.642 1.453 sum -4.710 -6.727 -3.588 8.962 Atomic orbital electron populations 1.69665 1.06074 1.26997 1.51178 1.24972 0.94890 0.99241 0.94130 0.86581 0.79555 0.82791 0.78547 1.20203 1.21367 1.20398 1.21201 0.92752 0.90129 1.49940 0.92340 1.18856 0.90315 0.92997 0.87120 0.98633 1.22441 1.00241 0.96111 1.00169 1.21970 0.90498 0.95405 0.93051 1.86311 1.32613 1.40018 1.71844 1.23191 0.87840 0.95311 0.96827 1.21104 0.93262 0.94273 0.93306 0.90003 1.20074 0.95592 0.94867 0.95930 1.21018 0.98141 0.99233 0.95030 1.21028 0.94978 0.98918 0.99425 1.21041 0.99269 0.96342 0.98500 1.21104 0.98211 0.98956 0.95465 1.21197 0.93688 0.97829 0.99850 1.61062 1.26501 1.02412 1.41770 0.92725 0.91811 0.91210 0.90130 0.95029 0.92442 0.89898 0.86294 0.86625 0.86753 0.86424 0.85255 0.81316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.74 11.62 55.43 0.64 -24.09 16 2 C 0.07 1.89 5.38 -17.82 -0.10 1.79 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.50 -13.64 8.57 -34.44 -0.30 -13.93 16 8 H 0.06 1.57 7.48 -52.49 -0.39 1.18 16 9 C 0.21 5.26 1.89 -69.25 -0.13 5.13 16 10 H 0.00 -0.10 6.54 -51.93 -0.34 -0.44 16 11 C -0.15 -3.20 5.18 -26.84 -0.14 -3.34 16 12 C 0.07 1.27 6.43 38.06 0.24 1.51 16 13 O -0.39 -7.42 9.95 -21.74 -0.22 -7.63 16 14 C 0.05 0.86 6.01 36.18 0.22 1.08 16 15 C 0.09 1.81 2.39 -69.57 -0.17 1.64 16 16 H 0.08 1.67 7.09 -51.93 -0.37 1.30 16 17 C -0.06 -1.15 4.67 -104.62 -0.49 -1.64 16 18 C -0.12 -1.81 9.66 -39.58 -0.38 -2.19 16 19 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 20 C -0.13 -1.83 10.05 -39.58 -0.40 -2.22 16 21 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 22 C -0.11 -1.91 9.07 -39.58 -0.36 -2.27 16 23 N -0.68 -16.06 6.19 -103.12 -0.64 -16.69 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 25 H 0.06 1.37 7.24 -51.93 -0.38 0.99 16 26 H 0.07 1.44 7.54 -51.93 -0.39 1.04 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.03 0.60 7.72 -51.93 -0.40 0.20 16 29 H 0.06 1.16 6.78 -51.93 -0.35 0.81 16 30 H 0.08 1.39 7.74 -51.93 -0.40 0.99 16 31 H 0.12 1.68 8.04 -52.48 -0.42 1.25 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.13 2.53 6.52 -52.49 -0.34 2.19 16 36 H 0.36 8.96 4.52 -39.29 -0.18 8.78 16 LS Contribution 285.83 15.07 4.31 4.31 Total: -1.00 -28.25 285.83 -8.50 -36.76 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.79 Total: 9.95 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.79 Total: -18.78 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.01 Total: -40.78 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.22 Total: -7.63 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.25 -8.50 -36.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709963229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.201 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds