Wall clock time and date at job start Mon Mar 30 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00324 * 2 1 4 4 H 1.48502 * 109.47254 * 239.99968 * 3 2 1 5 5 H 1.48500 * 109.46759 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47079 * 119.99419 * 3 2 1 7 7 C 1.37880 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99708 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00182 * 359.97438 * 7 2 1 10 10 H 1.08998 * 108.62081 * 301.80783 * 9 7 2 11 11 C 1.50985 * 108.75072 * 183.60064 * 9 7 2 12 12 C 1.54711 * 109.07601 * 147.02173 * 11 9 7 13 13 O 1.36616 * 110.79095 * 73.34604 * 12 11 9 14 14 C 1.43449 * 117.83864 * 298.95564 * 13 12 11 15 15 C 1.51048 * 107.55581 * 82.09057 * 14 13 12 16 16 H 1.08997 * 109.00925 * 26.47920 * 15 14 13 17 17 C 1.50706 * 109.05820 * 145.44283 * 15 14 13 18 18 C 1.38238 * 119.99776 * 262.05058 * 17 15 14 19 19 C 1.38234 * 119.99693 * 179.97438 * 18 17 15 20 20 C 1.38234 * 120.00240 * 0.02562 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 22 22 C 1.38234 * 120.00160 * 82.03275 * 17 15 14 23 23 N 1.47391 * 111.55601 * 265.97148 * 15 14 13 24 24 H 0.97003 * 120.00148 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.53669 * 266.89982 * 11 9 7 26 26 H 1.08994 * 109.53774 * 27.06361 * 11 9 7 27 27 H 1.09003 * 109.21297 * 193.68425 * 12 11 9 28 28 H 1.09000 * 109.21244 * 313.05073 * 12 11 9 29 29 H 1.08999 * 109.84364 * 322.58058 * 14 13 12 30 30 H 1.08996 * 109.83777 * 201.60451 * 14 13 12 31 31 H 1.08005 * 120.00103 * 359.97438 * 18 17 15 32 32 H 1.07999 * 119.99751 * 179.97438 * 19 18 17 33 33 H 1.08002 * 119.99744 * 179.97438 * 20 19 18 34 34 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 35 35 H 1.08000 * 120.00005 * 359.97438 * 22 17 15 36 36 H 1.00894 * 111.00587 * 275.10268 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6058 -2.5286 0.8775 11 6 2.2441 -3.6330 0.0886 12 6 1.6121 -4.7970 0.8882 13 8 0.6626 -5.4375 0.1436 14 6 -0.4713 -4.6760 -0.2947 15 6 -0.0605 -3.9210 -1.5369 16 1 0.7434 -4.4647 -2.0331 17 6 -1.2407 -3.8286 -2.4694 18 6 -1.3648 -4.7212 -3.5177 19 6 -2.4477 -4.6368 -4.3728 20 6 -3.4061 -3.6595 -4.1800 21 6 -3.2789 -2.7632 -3.1353 22 6 -2.1994 -2.8516 -2.2764 23 7 0.4058 -2.5605 -1.2143 24 1 -0.4850 0.8401 -0.0004 25 1 2.4975 -3.9753 -0.9148 26 1 3.1458 -3.2888 0.5949 27 1 2.3914 -5.5075 1.1639 28 1 1.1509 -4.4016 1.7932 29 1 -0.7685 -3.9734 0.4838 30 1 -1.2997 -5.3456 -0.5258 31 1 -0.6157 -5.4845 -3.6686 32 1 -2.5444 -5.3338 -5.1920 33 1 -4.2519 -3.5934 -4.8484 34 1 -4.0254 -1.9970 -2.9873 35 1 -2.1028 -2.1547 -1.4570 36 1 -0.3699 -1.9187 -1.1476 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709963229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:56 Heat of formation + Delta-G solvation = -31.785010 kcal Electronic energy + Delta-G solvation = -18368.558359 eV Core-core repulsion = 15623.781527 eV Total energy + Delta-G solvation = -2744.776832 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15466 -39.67477 -36.73795 -34.95215 -33.37110 -31.78468 -30.81491 -28.32352 -28.28427 -25.34103 -23.79302 -23.13299 -22.11150 -20.54649 -18.77244 -17.85721 -17.40106 -17.18645 -16.61579 -16.45147 -16.02267 -15.65973 -15.35761 -14.71506 -14.20588 -14.17353 -13.95337 -13.49127 -13.36071 -13.03274 -12.90869 -12.77418 -12.33846 -12.23942 -11.98237 -11.81053 -11.66906 -11.58446 -11.03608 -10.59663 -10.48514 -9.76600 -9.63229 -8.61699 -8.16935 -6.24926 0.49644 0.55275 1.40576 1.42967 1.49671 2.41977 2.80806 2.92440 3.11022 3.79037 3.87835 4.02706 4.11075 4.21667 4.23159 4.29547 4.33684 4.41669 4.51896 4.61482 4.69444 4.80873 4.88016 4.99617 5.04323 5.15577 5.17088 5.23557 5.51032 5.62547 5.66670 5.75914 5.81383 6.17442 6.22772 6.46438 6.65875 7.03771 7.11912 7.45901 8.93230 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.019375 B = 0.008415 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.797091 B = 3326.588317 C = 4445.350623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.216 3.784 10 H -0.038 1.038 11 C -0.146 4.146 12 C 0.073 3.927 13 O -0.388 6.388 14 C 0.054 3.946 15 C 0.097 3.903 16 H 0.076 0.924 17 C -0.087 4.087 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.131 4.131 23 N -0.693 5.693 24 H 0.263 0.737 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.024 0.976 29 H 0.033 0.967 30 H 0.106 0.894 31 H 0.133 0.867 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.134 0.866 35 H 0.098 0.902 36 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 -9.020 -5.370 11.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.177 4.177 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.109 3.891 10 H -0.021 1.021 11 C -0.184 4.184 12 C -0.004 4.004 13 O -0.306 6.306 14 C -0.024 4.024 15 C -0.014 4.014 16 H 0.094 0.906 17 C -0.087 4.087 18 C -0.139 4.139 19 C -0.135 4.135 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.149 4.149 23 N -0.331 5.331 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.136 0.864 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.124 0.876 31 H 0.151 0.849 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.152 0.848 35 H 0.116 0.884 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.915 -9.117 -5.788 11.865 hybrid contribution -0.180 1.592 1.074 1.929 sum -5.094 -7.525 -4.713 10.237 Atomic orbital electron populations 1.69793 1.07106 1.27546 1.51399 1.25719 0.95749 1.02329 0.93878 0.85620 0.78379 0.79012 0.78579 1.20179 1.20943 1.19585 1.21575 0.92903 0.91770 1.50462 0.92694 1.18772 0.90370 0.93614 0.86314 1.02070 1.22363 0.99561 0.95998 1.00498 1.22007 0.91048 0.95310 0.92060 1.86318 1.32573 1.39921 1.71837 1.23128 0.88438 0.95237 0.95597 1.21004 0.94109 0.92117 0.94133 0.90582 1.19969 0.95197 0.96495 0.97050 1.21229 0.99341 0.98933 0.94427 1.21461 0.93646 0.99025 0.99403 1.21474 1.00049 0.94986 0.97760 1.21341 0.97594 0.99912 0.95439 1.21060 0.95482 0.98068 1.00314 1.60919 1.26590 1.04631 1.40911 0.92787 0.92185 0.90941 0.86448 0.95760 0.94811 0.87561 0.84880 0.82947 0.83117 0.84834 0.88426 0.82400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.32 11.62 21.45 0.25 -52.07 16 2 C 0.02 1.27 5.38 84.66 0.46 1.73 16 3 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.53 -29.62 8.57 25.60 0.22 -29.40 16 8 H 0.05 3.02 7.48 -2.91 -0.02 3.00 16 9 C 0.22 11.09 1.89 43.29 0.08 11.17 16 10 H -0.04 -2.16 6.54 -2.39 -0.02 -2.18 16 11 C -0.15 -6.25 5.18 30.52 0.16 -6.09 16 12 C 0.07 2.68 6.43 72.57 0.47 3.14 16 13 O -0.39 -14.53 9.95 -100.69 -1.00 -15.53 16 14 C 0.05 2.03 6.01 71.35 0.43 2.46 16 15 C 0.10 3.91 2.39 43.44 0.10 4.01 16 16 H 0.08 3.13 7.09 -2.39 -0.02 3.11 16 17 C -0.09 -3.11 4.67 -19.86 -0.09 -3.20 16 18 C -0.12 -3.53 9.66 22.27 0.22 -3.32 16 19 C -0.12 -2.80 10.05 22.27 0.22 -2.58 16 20 C -0.12 -2.98 10.05 22.27 0.22 -2.75 16 21 C -0.12 -3.65 10.05 22.27 0.22 -3.43 16 22 C -0.13 -4.77 9.07 22.27 0.20 -4.57 16 23 N -0.69 -34.19 6.19 -480.18 -2.97 -37.16 16 24 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 25 H 0.06 2.59 7.24 -2.39 -0.02 2.57 16 26 H 0.07 3.01 7.54 -2.39 -0.02 2.99 16 27 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 28 H 0.02 0.93 7.72 -2.39 -0.02 0.91 16 29 H 0.03 1.44 6.78 -2.39 -0.02 1.42 16 30 H 0.11 3.51 7.74 -2.39 -0.02 3.49 16 31 H 0.13 3.43 8.04 -2.91 -0.02 3.41 16 32 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.10 4.12 6.52 -2.91 -0.02 4.10 16 36 H 0.35 18.46 4.52 -89.70 -0.41 18.06 16 Total: -1.00 -62.44 285.83 1.88 -60.56 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.67 Total: 30.80 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 2.91 Total: -32.82 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -2.72 Total: -89.23 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -1.00 Total: -15.53 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -62.44 1.88 -60.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709963229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.772 kcal (2) G-P(sol) polarization free energy of solvation -62.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds