Wall clock time and date at job start Mon Mar 30 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47596 * 2 1 4 4 C 1.53004 * 109.46656 * 119.99938 * 2 1 3 5 5 C 1.50697 * 109.47129 * 294.99778 * 4 2 1 6 6 H 1.07998 * 120.00237 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99843 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99859 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99834 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47057 * 60.00120 * 9 7 5 11 11 H 1.48498 * 109.46751 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47253 * 300.00199 * 9 7 5 13 13 N 1.46505 * 109.46710 * 239.99706 * 2 1 3 14 14 C 1.36882 * 125.06267 * 299.97408 * 13 2 1 15 15 C 1.34217 * 109.91524 * 180.02562 * 14 13 2 16 16 C 1.46500 * 106.99344 * 0.26945 * 15 14 13 17 17 C 1.37699 * 125.06021 * 120.02560 * 13 2 1 18 18 C 1.39133 * 133.41161 * 359.97438 * 17 13 2 19 19 C 1.37752 * 119.96083 * 179.25194 * 18 17 13 20 20 C 1.38792 * 120.69383 * 0.60576 * 19 18 17 21 21 C 1.37864 * 120.35331 * 359.60694 * 20 19 18 22 22 F 1.35101 * 120.19627 * 179.97438 * 21 20 19 23 23 H 1.09004 * 109.47050 * 300.00850 * 1 2 3 24 24 H 1.09010 * 109.46831 * 59.99756 * 1 2 3 25 25 H 1.08993 * 109.47737 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47178 * 55.00180 * 4 2 1 27 27 H 1.08999 * 109.46860 * 174.99753 * 4 2 1 28 28 H 0.96989 * 119.99840 * 179.97438 * 8 7 5 29 29 H 1.07995 * 125.04305 * 0.02562 * 14 13 2 30 30 H 1.08002 * 126.49959 * 179.97438 * 15 14 13 31 31 H 1.07996 * 120.01632 * 359.95150 * 18 17 13 32 32 H 1.08008 * 119.65118 * 180.21631 * 19 18 17 33 33 H 1.08004 * 119.82512 * 179.58463 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0807 0.9746 2.3757 7 6 1.9931 -0.4017 3.7284 8 7 2.6762 -1.5188 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.0195 0.6702 5.3095 11 1 1.9943 -0.1367 6.4621 12 1 2.0917 1.9238 5.1865 13 7 2.0183 -0.6907 -1.1962 14 6 1.7526 -1.9952 -1.5145 15 6 2.3500 -2.3139 -2.6733 16 6 3.0611 -1.1178 -3.1315 17 6 2.8136 -0.1245 -2.1672 18 6 3.3638 1.1425 -2.3338 19 6 4.1510 1.4119 -3.4316 20 6 4.3941 0.4340 -4.3861 21 6 3.8558 -0.8272 -4.2442 22 9 4.0941 -1.7765 -5.1755 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.6053 -1.7198 1.2952 27 1 3.1262 -0.7996 1.2057 28 1 2.9240 -1.8414 4.7317 29 1 1.1514 -2.6682 -0.9212 30 1 2.3170 -3.2719 -3.1710 31 1 3.1830 1.9111 -1.5969 32 1 4.5784 2.3962 -3.5541 33 1 5.0079 0.6625 -5.2449 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709995559.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:52 Heat of formation + Delta-G solvation = -0.530728 kcal Electronic energy + Delta-G solvation = -17268.874519 eV Core-core repulsion = 14401.992669 eV Total energy + Delta-G solvation = -2866.881850 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -48.56373 -40.98210 -36.90335 -34.72673 -32.49112 -30.63469 -28.86503 -28.22040 -27.14356 -23.95732 -22.41083 -21.78362 -21.31297 -19.07205 -17.09758 -16.57163 -16.31766 -15.62771 -15.39381 -15.06549 -14.76687 -14.45511 -14.08526 -13.45073 -12.97232 -12.64029 -12.46189 -12.42152 -12.04116 -11.69047 -11.32058 -11.13297 -11.10324 -11.03237 -10.96449 -10.59840 -10.22729 -9.79317 -9.40607 -9.12793 -8.54030 -7.97674 -7.23995 -6.18069 -4.23338 1.24064 1.76210 3.05961 3.22415 3.24185 3.28474 3.32254 3.98111 4.31602 4.56010 4.90245 5.07527 5.17135 5.20858 5.37894 5.46340 5.61192 5.73920 5.86885 5.91520 5.97208 6.13535 6.29654 6.32096 6.49006 6.55608 6.61383 6.65228 6.95129 7.08304 7.34984 7.40626 7.61988 7.66177 7.83233 8.14096 8.81109 9.41850 10.92976 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.036313 B = 0.005270 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.883900 B = 5311.440838 C = 5517.685489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.130 3.870 3 H 0.087 0.913 4 C 0.020 3.980 5 C -0.526 4.526 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.461 5.461 14 C 0.077 3.923 15 C -0.218 4.218 16 C -0.147 4.147 17 C 0.124 3.876 18 C -0.131 4.131 19 C -0.085 4.085 20 C -0.191 4.191 21 C 0.136 3.864 22 F -0.144 7.144 23 H 0.084 0.916 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.264 0.736 29 H 0.168 0.832 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.570 2.997 -12.252 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.030 3.970 3 H 0.105 0.895 4 C -0.017 4.017 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.527 5.527 9 Si 0.723 3.277 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.140 5.140 14 C -0.050 4.050 15 C -0.242 4.242 16 C -0.153 4.153 17 C 0.015 3.985 18 C -0.152 4.152 19 C -0.105 4.105 20 C -0.211 4.211 21 C 0.117 3.883 22 F -0.123 7.123 23 H 0.102 0.898 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.185 0.815 30 H 0.161 0.839 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.635 2.974 -11.821 12.206 hybrid contribution -0.121 0.196 0.830 0.861 sum -0.756 3.170 -10.992 11.465 Atomic orbital electron populations 1.22057 0.94349 1.02325 1.01802 1.21907 0.94720 0.96954 0.83421 0.89515 1.19449 0.97084 0.95992 0.89214 1.20975 1.36314 1.08742 0.90439 0.92232 1.24998 0.94818 0.95013 0.99244 1.69949 1.37849 1.20898 1.24046 0.86591 0.78956 0.80058 0.82051 1.20080 1.21157 1.20095 1.44794 1.40468 1.09797 1.18917 1.21825 1.00961 0.85631 0.96614 1.21449 1.06247 0.97859 0.98677 1.19086 1.04081 0.96053 0.96090 1.18066 0.96417 0.94092 0.89957 1.20117 1.00966 0.94262 0.99827 1.20486 0.98050 0.98754 0.93202 1.20702 1.05812 0.92214 1.02392 1.17038 0.98551 0.86194 0.86560 1.91432 1.92913 1.63944 1.63974 0.89771 0.93978 0.92556 0.95737 0.95856 0.92620 0.81481 0.83857 0.85763 0.85234 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.04 37.16 0.34 -2.17 16 2 C 0.13 2.50 2.95 -67.92 -0.20 2.30 16 3 H 0.09 1.64 7.33 -51.93 -0.38 1.26 16 4 C 0.02 0.48 4.43 -27.88 -0.12 0.36 16 5 C -0.53 -13.62 8.41 -34.44 -0.29 -13.91 16 6 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -25.52 13.29 55.43 0.74 -24.79 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.46 -8.46 2.65 -107.34 -0.28 -8.75 16 14 C 0.08 1.32 10.25 -16.71 -0.17 1.15 16 15 C -0.22 -3.63 11.08 -37.67 -0.42 -4.04 16 16 C -0.15 -2.59 6.36 -105.09 -0.67 -3.26 16 17 C 0.12 2.21 6.81 -84.00 -0.57 1.64 16 18 C -0.13 -2.03 9.80 -39.43 -0.39 -2.42 16 19 C -0.09 -1.14 10.01 -39.55 -0.40 -1.53 16 20 C -0.19 -2.65 10.01 -39.51 -0.40 -3.05 16 21 C 0.14 2.21 7.34 -39.14 -0.29 1.92 16 22 F -0.14 -2.30 17.28 2.25 0.04 -2.27 16 23 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 24 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 25 H 0.06 0.93 7.89 -51.93 -0.41 0.52 16 26 H 0.02 0.62 8.04 -51.93 -0.42 0.20 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.17 2.54 8.06 -52.49 -0.42 2.11 16 30 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.12 1.77 7.55 -52.49 -0.40 1.37 16 32 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 287.65 15.07 4.33 4.33 Total: -1.00 -28.80 287.65 -7.87 -36.67 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.01 Total: 0.78 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -3.67 Total: -21.45 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.45 Total: -33.53 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.80 -7.87 -36.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709995559.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.137 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds