Wall clock time and date at job start Mon Mar 30 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47596 * 2 1 4 4 C 1.53004 * 109.46656 * 119.99938 * 2 1 3 5 5 C 1.50697 * 109.47129 * 294.99778 * 4 2 1 6 6 H 1.07998 * 120.00237 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99843 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99859 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99834 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47057 * 60.00120 * 9 7 5 11 11 H 1.48498 * 109.46751 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47253 * 300.00199 * 9 7 5 13 13 N 1.46505 * 109.46710 * 239.99706 * 2 1 3 14 14 C 1.36882 * 125.06267 * 299.97408 * 13 2 1 15 15 C 1.34217 * 109.91524 * 180.02562 * 14 13 2 16 16 C 1.46500 * 106.99344 * 0.26945 * 15 14 13 17 17 C 1.37699 * 125.06021 * 120.02560 * 13 2 1 18 18 C 1.39133 * 133.41161 * 359.97438 * 17 13 2 19 19 C 1.37752 * 119.96083 * 179.25194 * 18 17 13 20 20 C 1.38792 * 120.69383 * 0.60576 * 19 18 17 21 21 C 1.37864 * 120.35331 * 359.60694 * 20 19 18 22 22 F 1.35101 * 120.19627 * 179.97438 * 21 20 19 23 23 H 1.09004 * 109.47050 * 300.00850 * 1 2 3 24 24 H 1.09010 * 109.46831 * 59.99756 * 1 2 3 25 25 H 1.08993 * 109.47737 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47178 * 55.00180 * 4 2 1 27 27 H 1.08999 * 109.46860 * 174.99753 * 4 2 1 28 28 H 0.96989 * 119.99840 * 179.97438 * 8 7 5 29 29 H 1.07995 * 125.04305 * 0.02562 * 14 13 2 30 30 H 1.08002 * 126.49959 * 179.97438 * 15 14 13 31 31 H 1.07996 * 120.01632 * 359.95150 * 18 17 13 32 32 H 1.08008 * 119.65118 * 180.21631 * 19 18 17 33 33 H 1.08004 * 119.82512 * 179.58463 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0807 0.9746 2.3757 7 6 1.9931 -0.4017 3.7284 8 7 2.6762 -1.5188 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.0195 0.6702 5.3095 11 1 1.9943 -0.1367 6.4621 12 1 2.0917 1.9238 5.1865 13 7 2.0183 -0.6907 -1.1962 14 6 1.7526 -1.9952 -1.5145 15 6 2.3500 -2.3139 -2.6733 16 6 3.0611 -1.1178 -3.1315 17 6 2.8136 -0.1245 -2.1672 18 6 3.3638 1.1425 -2.3338 19 6 4.1510 1.4119 -3.4316 20 6 4.3941 0.4340 -4.3861 21 6 3.8558 -0.8272 -4.2442 22 9 4.0941 -1.7765 -5.1755 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.6053 -1.7198 1.2952 27 1 3.1262 -0.7996 1.2057 28 1 2.9240 -1.8414 4.7317 29 1 1.1514 -2.6682 -0.9212 30 1 2.3170 -3.2719 -3.1710 31 1 3.1830 1.9111 -1.5969 32 1 4.5784 2.3962 -3.5541 33 1 5.0079 0.6625 -5.2449 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709995559.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:50 Heat of formation + Delta-G solvation = -14.138975 kcal Electronic energy + Delta-G solvation = -17269.464617 eV Core-core repulsion = 14401.992669 eV Total energy + Delta-G solvation = -2867.471948 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -49.78486 -42.27686 -38.18593 -36.30907 -34.34610 -31.97591 -30.16737 -29.57544 -28.80766 -25.73315 -23.67815 -23.16980 -22.69513 -20.43699 -18.79367 -17.99959 -17.79951 -16.80068 -16.69255 -16.53893 -16.39155 -15.71423 -15.51721 -15.02880 -14.41083 -14.14343 -13.84324 -13.71885 -13.61046 -13.16519 -12.90168 -12.74559 -12.49506 -12.35505 -12.30501 -12.28072 -11.91139 -11.46719 -11.37867 -10.60379 -10.44918 -9.23572 -8.52109 -8.23429 -6.35901 0.02621 0.56883 1.42094 1.44041 1.51789 1.75023 1.92472 2.40757 2.77512 3.11131 3.36003 3.69058 3.82453 3.94198 4.16052 4.20470 4.25689 4.38495 4.43857 4.66190 4.78052 4.87704 4.93656 5.01416 5.16249 5.23523 5.29603 5.36343 5.44643 5.47994 5.69296 5.73504 5.90478 6.06646 6.28635 6.42286 6.78807 7.34173 8.88029 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.036313 B = 0.005270 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.883900 B = 5311.440838 C = 5517.685489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.143 3.857 3 H 0.090 0.910 4 C 0.031 3.969 5 C -0.534 4.534 6 H 0.074 0.926 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.472 5.472 14 C 0.059 3.941 15 C -0.220 4.220 16 C -0.172 4.172 17 C 0.100 3.900 18 C -0.147 4.147 19 C -0.071 4.071 20 C -0.180 4.180 21 C 0.117 3.883 22 F -0.147 7.147 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.002 0.998 27 H -0.017 1.017 28 H 0.264 0.736 29 H 0.177 0.823 30 H 0.161 0.839 31 H 0.134 0.866 32 H 0.171 0.829 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 4.977 -13.119 14.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.042 3.958 3 H 0.109 0.891 4 C -0.007 4.007 5 C -0.572 4.572 6 H 0.092 0.908 7 C -0.194 4.194 8 N -0.573 5.573 9 Si 0.790 3.210 10 H -0.187 1.187 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.153 5.153 14 C -0.067 4.067 15 C -0.245 4.245 16 C -0.178 4.178 17 C -0.008 4.008 18 C -0.167 4.167 19 C -0.090 4.090 20 C -0.200 4.200 21 C 0.097 3.903 22 F -0.125 7.125 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.020 0.980 27 H 0.001 0.999 28 H 0.072 0.928 29 H 0.194 0.806 30 H 0.179 0.821 31 H 0.152 0.848 32 H 0.188 0.812 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.810 4.961 -12.717 13.674 hybrid contribution 0.021 -0.410 0.985 1.067 sum -0.790 4.552 -11.731 12.608 Atomic orbital electron populations 1.21963 0.92459 1.02637 1.02585 1.21568 0.96058 0.96249 0.81947 0.89150 1.19237 0.94373 0.95444 0.91638 1.21427 1.35617 1.09073 0.91097 0.90822 1.25942 0.94814 0.95916 1.02776 1.70101 1.39583 1.22894 1.24675 0.85492 0.79150 0.78651 0.77740 1.18742 1.21450 1.19110 1.44695 1.41429 1.10268 1.18884 1.22083 1.01807 0.85647 0.97212 1.21743 1.05676 0.98518 0.98524 1.19382 1.05050 0.96392 0.96983 1.18485 0.96975 0.95282 0.90072 1.20458 1.01482 0.93693 1.01081 1.20976 0.96193 1.00251 0.91539 1.21146 1.04632 0.91039 1.03146 1.17308 0.99282 0.87222 0.86495 1.91421 1.92967 1.64237 1.63897 0.90196 0.91787 0.92547 0.97950 0.99876 0.92762 0.80614 0.82141 0.84797 0.81170 0.82208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 9.04 71.98 0.65 -3.96 16 2 C 0.14 5.51 2.95 44.99 0.13 5.64 16 3 H 0.09 3.39 7.33 -2.39 -0.02 3.37 16 4 C 0.03 1.52 4.43 29.85 0.13 1.66 16 5 C -0.53 -27.81 8.41 25.60 0.22 -27.59 16 6 H 0.07 3.55 7.06 -2.91 -0.02 3.53 16 7 C 0.00 0.22 5.46 84.66 0.46 0.68 16 8 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 9 Si 0.97 41.84 29.54 68.60 2.03 43.87 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 13 N -0.47 -17.54 2.65 -493.51 -1.31 -18.85 16 14 C 0.06 2.06 10.25 82.99 0.85 2.91 16 15 C -0.22 -7.40 11.08 23.51 0.26 -7.14 16 16 C -0.17 -6.02 6.36 -20.17 -0.13 -6.15 16 17 C 0.10 3.54 6.81 39.02 0.27 3.80 16 18 C -0.15 -4.30 9.80 22.37 0.22 -4.08 16 19 C -0.07 -1.64 10.01 22.29 0.22 -1.42 16 20 C -0.18 -4.44 10.01 22.31 0.22 -4.22 16 21 C 0.12 3.62 7.34 22.56 0.17 3.79 16 22 F -0.15 -4.52 17.28 44.97 0.78 -3.74 16 23 H 0.08 2.70 6.95 -2.38 -0.02 2.69 16 24 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.06 1.85 7.89 -2.39 -0.02 1.83 16 26 H 0.00 0.11 8.04 -2.39 -0.02 0.10 16 27 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 28 H 0.26 14.73 8.31 -92.72 -0.77 13.96 16 29 H 0.18 5.55 8.06 -2.91 -0.02 5.53 16 30 H 0.16 4.59 8.06 -2.91 -0.02 4.57 16 31 H 0.13 3.57 7.55 -2.91 -0.02 3.55 16 32 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -62.91 287.65 6.55 -56.36 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 1.10 Total: 13.07 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 3.67 Total: -36.07 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -1.02 Total: -73.49 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.78 Total: -3.74 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -62.91 6.55 -56.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709995559.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.221 kcal (2) G-P(sol) polarization free energy of solvation -62.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds