Wall clock time and date at job start Mon Mar 30 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46660 * 2 1 4 4 C 1.52994 * 109.47207 * 239.99754 * 2 1 3 5 5 C 1.50692 * 109.47250 * 65.00124 * 4 2 1 6 6 H 1.08006 * 120.00167 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00409 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00537 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99501 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47336 * 89.99912 * 9 7 5 11 11 H 1.48505 * 109.47183 * 209.99677 * 9 7 5 12 12 H 1.48500 * 109.47359 * 329.99542 * 9 7 5 13 13 N 1.46504 * 109.46952 * 119.99421 * 2 1 3 14 14 C 1.36887 * 125.06336 * 59.97846 * 13 2 1 15 15 C 1.34214 * 109.92000 * 180.02562 * 14 13 2 16 16 C 1.46501 * 106.98898 * 359.80379 * 15 14 13 17 17 C 1.37705 * 125.06542 * 240.00321 * 13 2 1 18 18 C 1.39129 * 133.40889 * 359.97438 * 17 13 2 19 19 C 1.37748 * 119.96437 * 179.97438 * 18 17 13 20 20 C 1.38800 * 120.69261 * 0.02562 * 19 18 17 21 21 C 1.37861 * 120.35234 * 359.97438 * 20 19 18 22 22 F 1.35104 * 120.19541 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47221 * 300.00396 * 1 2 3 25 25 H 1.08998 * 109.47080 * 60.00554 * 1 2 3 26 26 H 1.09004 * 109.47006 * 185.00339 * 4 2 1 27 27 H 1.09000 * 109.47134 * 304.99685 * 4 2 1 28 28 H 0.96995 * 120.00131 * 180.02562 * 8 7 5 29 29 H 1.08000 * 125.03818 * 0.04007 * 14 13 2 30 30 H 1.08000 * 126.50299 * 180.02562 * 15 14 13 31 31 H 1.08002 * 120.01506 * 0.02562 * 18 17 13 32 32 H 1.08002 * 119.65325 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.82265 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6450 0.2770 -4.7993 9 14 2.9637 -1.9885 -3.9026 10 1 2.0245 -3.1328 -4.0198 11 1 3.8127 -1.9184 -5.1189 12 1 3.8253 -2.1757 -2.7077 13 7 2.0183 -0.6905 1.1963 14 6 1.7519 -1.9948 1.5153 15 6 2.3486 -2.3131 2.6745 16 6 3.0587 -1.1165 3.1332 17 6 2.8133 -0.1241 2.1676 18 6 3.3636 1.1429 2.3339 19 6 4.1371 1.4173 3.4401 20 6 4.3768 0.4407 4.3969 21 6 3.8419 -0.8217 4.2530 22 9 4.0777 -1.7701 5.1859 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 3.1264 -0.7995 -1.2054 27 1 1.6054 -1.7198 -1.2950 28 1 1.8923 -0.0459 -5.6799 29 1 1.1508 -2.6679 0.9219 30 1 2.3150 -3.2707 3.1727 31 1 3.1837 1.9111 1.5963 32 1 4.5615 2.4026 3.5644 33 1 4.9858 0.6710 5.2586 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709995561.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:58 Heat of formation + Delta-G solvation = 3.226481 kcal Electronic energy + Delta-G solvation = -17332.874514 eV Core-core repulsion = 14466.155589 eV Total energy + Delta-G solvation = -2866.718925 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 3.92 seconds Orbital eigenvalues (eV) -48.63683 -41.09120 -37.00636 -34.83731 -32.48869 -30.78184 -29.01626 -28.42492 -27.58459 -23.80730 -22.47366 -21.76961 -21.26726 -19.09823 -17.46655 -16.66273 -16.50793 -15.71352 -15.47211 -15.21137 -14.60885 -14.57607 -14.03486 -13.67691 -13.03953 -12.77822 -12.69987 -12.52940 -12.18132 -11.80696 -11.43300 -11.33051 -11.20865 -11.10080 -11.01397 -10.30415 -10.17607 -9.99153 -9.45071 -9.24245 -8.71800 -8.07871 -7.34186 -6.22274 -4.23417 1.15653 1.67726 2.94608 3.15471 3.19137 3.28354 3.31959 3.89914 4.29820 4.48055 4.81120 4.99201 5.07198 5.13446 5.28618 5.37406 5.52082 5.63588 5.78097 5.82057 5.87940 6.03407 6.21814 6.23315 6.37963 6.41687 6.54311 6.64013 6.81969 6.89803 6.96811 7.05671 7.44952 7.48660 7.69290 8.28829 8.78209 9.38239 10.89948 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.031120 B = 0.005831 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.523681 B = 4800.389503 C = 4953.684307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.140 3.860 3 H 0.093 0.907 4 C -0.017 4.017 5 C -0.525 4.525 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.266 1.266 13 N -0.464 5.464 14 C 0.071 3.929 15 C -0.215 4.215 16 C -0.148 4.148 17 C 0.125 3.875 18 C -0.131 4.131 19 C -0.084 4.084 20 C -0.190 4.190 21 C 0.136 3.864 22 F -0.144 7.144 23 H 0.055 0.945 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.266 0.734 29 H 0.168 0.832 30 H 0.144 0.856 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 -1.093 14.848 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.040 3.960 3 H 0.111 0.889 4 C -0.055 4.055 5 C -0.563 4.563 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.703 3.297 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.144 5.144 14 C -0.056 4.056 15 C -0.239 4.239 16 C -0.154 4.154 17 C 0.016 3.984 18 C -0.152 4.152 19 C -0.103 4.103 20 C -0.210 4.210 21 C 0.117 3.883 22 F -0.122 7.122 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.107 0.893 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.185 0.815 30 H 0.162 0.838 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.760 -0.983 14.350 14.491 hybrid contribution 0.561 -1.063 -0.190 1.217 sum 2.322 -2.046 14.160 14.494 Atomic orbital electron populations 1.22070 0.93877 1.02381 1.02338 1.21659 0.95037 0.96918 0.82378 0.88895 1.19938 0.96914 0.96318 0.92305 1.20875 1.36801 1.10000 0.88619 0.90432 1.24941 0.95207 0.96944 0.95767 1.69880 1.46156 1.39089 0.98175 0.86837 0.80753 0.84079 0.78048 1.20090 1.21092 1.19021 1.44807 1.40656 1.09841 1.19086 1.21821 1.01172 0.85687 0.96906 1.21462 1.06035 0.97910 0.98528 1.19088 1.04290 0.96017 0.95976 1.18062 0.96334 0.94134 0.89900 1.20145 1.01019 0.94220 0.99787 1.20513 0.98045 0.98795 0.92969 1.20727 1.05688 0.92181 1.02381 1.17041 0.98656 0.86231 0.86402 1.91437 1.92915 1.63990 1.63878 0.92621 0.93718 0.89255 0.95846 0.96269 0.92413 0.81512 0.83804 0.85588 0.85112 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.04 37.16 0.34 -2.15 16 2 C 0.14 2.58 2.95 -67.93 -0.20 2.38 16 3 H 0.09 1.71 7.33 -51.93 -0.38 1.33 16 4 C -0.02 -0.37 3.50 -27.89 -0.10 -0.47 16 5 C -0.52 -13.70 8.96 -34.44 -0.31 -14.01 16 6 H 0.08 2.14 7.30 -52.48 -0.38 1.76 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.18 13.96 55.43 0.77 -25.40 16 9 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 N -0.46 -8.08 2.65 -107.35 -0.28 -8.37 16 14 C 0.07 1.14 10.25 -16.71 -0.17 0.97 16 15 C -0.21 -3.36 11.08 -37.67 -0.42 -3.78 16 16 C -0.15 -2.48 6.36 -105.09 -0.67 -3.15 16 17 C 0.12 2.12 6.81 -84.00 -0.57 1.55 16 18 C -0.13 -1.95 9.80 -39.43 -0.39 -2.33 16 19 C -0.08 -1.06 10.01 -39.55 -0.40 -1.46 16 20 C -0.19 -2.51 10.01 -39.51 -0.40 -2.91 16 21 C 0.14 2.11 7.34 -39.14 -0.29 1.83 16 22 F -0.14 -2.21 17.28 2.25 0.04 -2.17 16 23 H 0.05 0.88 7.89 -51.93 -0.41 0.47 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.09 1.60 6.95 -51.93 -0.36 1.24 16 26 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 27 H 0.02 0.42 7.47 -51.93 -0.39 0.03 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 30 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.13 1.72 7.55 -52.49 -0.40 1.33 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 284.05 15.07 4.28 4.28 Total: -1.00 -29.13 284.05 -7.50 -36.63 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -3.97 Total: 0.44 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -3.66 Total: -21.60 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.49 Total: -33.77 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.13 -7.50 -36.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709995561.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.853 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.92 seconds