Wall clock time and date at job start Mon Mar 30 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46660 * 2 1 4 4 C 1.52994 * 109.47207 * 239.99754 * 2 1 3 5 5 C 1.50692 * 109.47250 * 65.00124 * 4 2 1 6 6 H 1.08006 * 120.00167 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00409 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00537 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99501 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47336 * 89.99912 * 9 7 5 11 11 H 1.48505 * 109.47183 * 209.99677 * 9 7 5 12 12 H 1.48500 * 109.47359 * 329.99542 * 9 7 5 13 13 N 1.46504 * 109.46952 * 119.99421 * 2 1 3 14 14 C 1.36887 * 125.06336 * 59.97846 * 13 2 1 15 15 C 1.34214 * 109.92000 * 180.02562 * 14 13 2 16 16 C 1.46501 * 106.98898 * 359.80379 * 15 14 13 17 17 C 1.37705 * 125.06542 * 240.00321 * 13 2 1 18 18 C 1.39129 * 133.40889 * 359.97438 * 17 13 2 19 19 C 1.37748 * 119.96437 * 179.97438 * 18 17 13 20 20 C 1.38800 * 120.69261 * 0.02562 * 19 18 17 21 21 C 1.37861 * 120.35234 * 359.97438 * 20 19 18 22 22 F 1.35104 * 120.19541 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47221 * 300.00396 * 1 2 3 25 25 H 1.08998 * 109.47080 * 60.00554 * 1 2 3 26 26 H 1.09004 * 109.47006 * 185.00339 * 4 2 1 27 27 H 1.09000 * 109.47134 * 304.99685 * 4 2 1 28 28 H 0.96995 * 120.00131 * 180.02562 * 8 7 5 29 29 H 1.08000 * 125.03818 * 0.04007 * 14 13 2 30 30 H 1.08000 * 126.50299 * 180.02562 * 15 14 13 31 31 H 1.08002 * 120.01506 * 0.02562 * 18 17 13 32 32 H 1.08002 * 119.65325 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.82265 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6450 0.2770 -4.7993 9 14 2.9637 -1.9885 -3.9026 10 1 2.0245 -3.1328 -4.0198 11 1 3.8127 -1.9184 -5.1189 12 1 3.8253 -2.1757 -2.7077 13 7 2.0183 -0.6905 1.1963 14 6 1.7519 -1.9948 1.5153 15 6 2.3486 -2.3131 2.6745 16 6 3.0587 -1.1165 3.1332 17 6 2.8133 -0.1241 2.1676 18 6 3.3636 1.1429 2.3339 19 6 4.1371 1.4173 3.4401 20 6 4.3768 0.4407 4.3969 21 6 3.8419 -0.8217 4.2530 22 9 4.0777 -1.7701 5.1859 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 3.1264 -0.7995 -1.2054 27 1 1.6054 -1.7198 -1.2950 28 1 1.8923 -0.0459 -5.6799 29 1 1.1508 -2.6679 0.9219 30 1 2.3150 -3.2707 3.1727 31 1 3.1837 1.9111 1.5963 32 1 4.5615 2.4026 3.5644 33 1 4.9858 0.6710 5.2586 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709995561.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:57 Heat of formation + Delta-G solvation = -11.099829 kcal Electronic energy + Delta-G solvation = -17333.495749 eV Core-core repulsion = 14466.155589 eV Total energy + Delta-G solvation = -2867.340160 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.78926 -42.30008 -38.22260 -36.33518 -34.38853 -32.07829 -30.32245 -29.73567 -29.05248 -25.47084 -23.65410 -23.04749 -22.66923 -20.40088 -19.24998 -18.03321 -17.81551 -16.82519 -16.67514 -16.55790 -16.26723 -15.77841 -15.49371 -15.21045 -14.66134 -14.23764 -13.85729 -13.75967 -13.66518 -13.22802 -13.04197 -12.80890 -12.53970 -12.33920 -12.29177 -11.94555 -11.89209 -11.69229 -11.42904 -10.81361 -10.47307 -9.25113 -8.53033 -8.33222 -6.37698 0.01815 0.55274 1.31065 1.35181 1.44197 1.74953 1.88206 2.30707 2.76381 3.01864 3.35168 3.67379 3.78870 3.92264 4.14340 4.17175 4.19905 4.34775 4.40373 4.65126 4.76462 4.81061 4.90757 4.96972 5.12438 5.15656 5.17882 5.28187 5.34045 5.46655 5.51769 5.70779 5.88397 6.16925 6.26852 6.39402 6.68998 7.26920 8.81970 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.031120 B = 0.005831 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.523681 B = 4800.389503 C = 4953.684307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.150 3.850 3 H 0.088 0.912 4 C -0.010 4.010 5 C -0.521 4.521 6 H 0.051 0.949 7 C 0.017 3.983 8 N -0.941 5.941 9 Si 0.937 3.063 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.259 1.259 13 N -0.474 5.474 14 C 0.058 3.942 15 C -0.218 4.218 16 C -0.171 4.171 17 C 0.101 3.899 18 C -0.147 4.147 19 C -0.071 4.071 20 C -0.180 4.180 21 C 0.117 3.883 22 F -0.146 7.146 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.010 0.990 27 H 0.027 0.973 28 H 0.267 0.733 29 H 0.185 0.815 30 H 0.162 0.838 31 H 0.132 0.868 32 H 0.169 0.831 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 -1.606 16.616 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.049 3.951 3 H 0.106 0.894 4 C -0.048 4.048 5 C -0.560 4.560 6 H 0.069 0.931 7 C -0.181 4.181 8 N -0.582 5.582 9 Si 0.762 3.238 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.183 1.183 13 N -0.155 5.155 14 C -0.068 4.068 15 C -0.242 4.242 16 C -0.177 4.177 17 C -0.007 4.007 18 C -0.168 4.168 19 C -0.090 4.090 20 C -0.200 4.200 21 C 0.097 3.903 22 F -0.125 7.125 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.029 0.971 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.202 0.798 30 H 0.180 0.820 31 H 0.150 0.850 32 H 0.186 0.814 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.628 -1.506 16.150 16.432 hybrid contribution 0.321 -0.802 -0.635 1.072 sum 2.949 -2.308 15.516 15.961 Atomic orbital electron populations 1.21967 0.92631 1.03000 1.02257 1.21319 0.95913 0.96187 0.81634 0.89410 1.19794 0.96058 0.96467 0.92464 1.21151 1.35381 1.09222 0.90199 0.93090 1.25765 0.96480 1.00268 0.95594 1.70011 1.48189 1.41178 0.98783 0.85856 0.79556 0.80417 0.78017 1.18826 1.21081 1.18300 1.44669 1.41556 1.10433 1.18866 1.22188 1.01719 0.85441 0.97439 1.21765 1.05504 0.98457 0.98480 1.19388 1.05123 0.96498 0.96663 1.18432 0.96964 0.95165 0.90128 1.20453 1.01618 0.93792 1.00943 1.20961 0.96368 1.00210 0.91472 1.21142 1.04607 0.91131 1.03084 1.17301 0.99408 0.87155 0.86392 1.91426 1.92980 1.64256 1.63836 0.91666 0.91902 0.91118 0.97117 0.95452 0.92357 0.79753 0.82003 0.85014 0.81405 0.82334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.04 71.98 0.65 -3.94 16 2 C 0.15 5.48 2.95 44.99 0.13 5.61 16 3 H 0.09 3.24 7.33 -2.39 -0.02 3.22 16 4 C -0.01 -0.43 3.50 29.84 0.10 -0.32 16 5 C -0.52 -27.57 8.96 25.60 0.23 -27.34 16 6 H 0.05 2.90 7.30 -2.91 -0.02 2.88 16 7 C 0.02 0.95 5.47 84.66 0.46 1.41 16 8 N -0.94 -56.15 13.96 21.45 0.30 -55.85 16 9 Si 0.94 42.81 27.47 68.60 1.88 44.69 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.26 -11.44 6.54 99.48 0.65 -10.79 16 13 N -0.47 -16.05 2.65 -493.54 -1.31 -17.36 16 14 C 0.06 1.77 10.25 82.99 0.85 2.62 16 15 C -0.22 -6.52 11.08 23.51 0.26 -6.26 16 16 C -0.17 -5.52 6.36 -20.17 -0.13 -5.65 16 17 C 0.10 3.33 6.81 39.02 0.27 3.59 16 18 C -0.15 -4.13 9.80 22.37 0.22 -3.91 16 19 C -0.07 -1.58 10.01 22.29 0.22 -1.36 16 20 C -0.18 -4.21 10.01 22.31 0.22 -3.98 16 21 C 0.12 3.41 7.34 22.56 0.17 3.58 16 22 F -0.15 -4.25 17.28 44.97 0.78 -3.47 16 23 H 0.06 1.97 7.89 -2.39 -0.02 1.96 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 2.56 6.95 -2.39 -0.02 2.55 16 26 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 27 H 0.03 1.15 7.47 -2.39 -0.02 1.14 16 28 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.19 4.72 8.06 -2.91 -0.02 4.69 16 30 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 31 H 0.13 3.44 7.55 -2.91 -0.02 3.41 16 32 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -62.60 284.05 6.36 -56.24 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.05 Total: 11.71 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 3.66 Total: -35.96 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -1.01 Total: -73.21 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.78 Total: -3.47 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.69 kcal Total: -62.60 6.36 -56.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709995561.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.136 kcal (2) G-P(sol) polarization free energy of solvation -62.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds