Wall clock time and date at job start Mon Mar 30 2020 06:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47503 * 180.02562 * 11 10 9 13 13 C 1.35900 * 117.00356 * 180.02562 * 12 11 10 14 14 C 1.38748 * 120.05925 * 359.97438 * 13 12 11 15 15 C 1.38125 * 119.94984 * 179.97438 * 14 13 12 16 16 C 1.38228 * 120.10099 * 0.02562 * 15 14 13 17 17 C 1.38484 * 120.05541 * 0.02562 * 16 15 14 18 18 C 1.38092 * 120.02474 * 359.73444 * 17 16 15 19 19 C 1.51191 * 108.24994 * 180.02562 * 17 16 15 20 20 N 1.48047 * 105.67553 * 342.48307 * 19 17 16 21 21 C 1.48046 * 103.89172 * 27.62506 * 20 19 17 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.08007 * 120.02295 * 359.95533 * 14 13 12 30 30 H 1.07996 * 119.94586 * 179.97438 * 15 14 13 31 31 H 1.07999 * 120.01095 * 180.25178 * 18 17 16 32 32 H 1.08995 * 110.20752 * 223.43096 * 19 17 16 33 33 H 1.09007 * 110.27972 * 101.56706 * 19 17 16 34 34 H 1.00902 * 111.00337 * 146.98869 * 20 19 17 35 35 H 1.08998 * 110.21148 * 213.32469 * 21 20 19 36 36 H 1.08999 * 110.27651 * 91.46215 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 8 2.4090 -6.0732 0.0018 13 6 1.8896 -7.3291 0.0019 14 6 0.5143 -7.5123 0.0019 15 6 -0.0112 -8.7897 0.0015 16 6 0.8310 -9.8858 0.0015 17 6 2.2041 -9.7054 0.0025 18 6 2.7335 -8.4300 -0.0020 19 6 2.8606 -11.0673 0.0016 20 7 1.8095 -12.0183 0.4291 21 6 0.5489 -11.3713 0.0000 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.8540 -5.0446 0.8914 28 1 0.8534 -5.0452 -0.8885 29 1 -0.1449 -6.6568 0.0026 30 1 -1.0817 -8.9323 0.0019 31 1 3.8043 -8.2896 -0.0053 32 1 3.6927 -11.0846 0.7054 33 1 3.2099 -11.3177 -1.0001 34 1 1.9275 -12.9139 -0.0205 35 1 -0.2515 -11.6031 0.7026 36 1 0.2769 -11.7018 -1.0024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713051499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:01 Heat of formation + Delta-G solvation = -18.559307 kcal Electronic energy + Delta-G solvation = -16720.324695 eV Core-core repulsion = 13976.121372 eV Total energy + Delta-G solvation = -2744.203323 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54217 -38.74514 -35.64061 -33.97965 -31.91591 -31.30579 -29.45599 -27.86835 -26.58607 -23.83762 -23.32764 -21.47561 -20.87572 -20.17277 -17.64816 -16.75662 -16.38535 -15.90739 -15.65061 -15.45432 -14.75242 -14.47626 -13.81321 -13.56752 -13.38866 -13.06677 -12.98787 -12.41490 -12.20534 -11.98657 -11.75540 -11.69764 -11.01960 -10.92892 -10.63600 -10.62412 -10.41606 -9.78531 -9.55287 -9.26096 -9.19533 -8.75645 -8.40145 -7.94024 -6.05426 -4.08236 1.24238 1.38223 3.31700 3.34978 3.36091 3.41104 3.65622 3.96214 4.37683 4.40493 4.46918 4.84679 5.09129 5.10459 5.15712 5.25258 5.30698 5.40911 5.50101 5.51176 5.63861 5.67109 5.92670 5.99052 6.11265 6.19659 6.39059 6.52813 6.54089 6.56719 6.79589 6.89524 6.96329 7.56927 7.63837 7.69008 7.92890 8.34664 8.97746 9.56184 11.06068 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.072780 B = 0.003231 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.628578 B = 8664.245338 C = 9005.785304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.108 4.108 11 C 0.058 3.942 12 O -0.314 6.314 13 C 0.146 3.854 14 C -0.207 4.207 15 C -0.057 4.057 16 C -0.156 4.156 17 C -0.069 4.069 18 C -0.139 4.139 19 C 0.082 3.918 20 N -0.660 5.660 21 C 0.087 3.913 22 H 0.262 0.738 23 H 0.018 0.982 24 H 0.019 0.981 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.135 0.865 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.344 0.656 35 H 0.087 0.913 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.504 -22.064 -1.226 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.146 4.146 11 C -0.016 4.016 12 O -0.228 6.228 13 C 0.100 3.900 14 C -0.226 4.226 15 C -0.076 4.076 16 C -0.157 4.157 17 C -0.070 4.070 18 C -0.159 4.159 19 C -0.047 4.047 20 N -0.288 5.288 21 C -0.042 4.042 22 H 0.072 0.928 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.153 0.847 30 H 0.142 0.858 31 H 0.148 0.852 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.105 0.895 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.526 -21.710 -0.493 21.769 hybrid contribution 0.118 0.956 -1.003 1.391 sum 1.644 -20.754 -1.497 20.873 Atomic orbital electron populations 1.69946 1.06090 1.26892 1.50559 1.25021 0.94884 0.99358 0.95154 0.86605 0.79547 0.82849 0.78707 1.20169 1.21243 1.20152 1.21150 0.93129 0.90733 1.51047 0.92486 1.19040 0.93814 0.90823 0.97529 1.21729 0.99907 0.90962 1.02007 1.23234 0.92225 0.85194 1.00931 1.86118 1.37343 1.11846 1.87460 1.18928 0.91613 0.85361 0.94129 1.21304 0.94347 0.98304 1.08633 1.20217 0.99267 0.90591 0.97494 1.20339 0.94153 0.94845 1.06351 1.20177 0.94606 0.93645 0.98562 1.19602 0.99857 0.88890 1.07500 1.21376 0.95313 0.88194 0.99837 1.63489 1.01791 1.04907 1.58659 1.21282 0.93712 0.89834 0.99330 0.92834 0.96322 0.96290 0.92171 0.92152 0.92243 0.92272 0.84676 0.85831 0.85214 0.89029 0.92260 0.84037 0.89509 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.11 -2.26 5.52 -26.73 -0.15 -2.41 16 11 C 0.06 1.04 4.74 37.16 0.18 1.21 16 12 O -0.31 -5.48 10.14 -19.43 -0.20 -5.68 16 13 C 0.15 2.26 6.69 -39.22 -0.26 2.00 16 14 C -0.21 -2.91 9.04 -39.43 -0.36 -3.26 16 15 C -0.06 -0.70 10.04 -39.63 -0.40 -1.10 16 16 C -0.16 -1.87 6.26 -104.29 -0.65 -2.52 16 17 C -0.07 -0.85 6.26 -104.34 -0.65 -1.51 16 18 C -0.14 -1.92 9.98 -39.46 -0.39 -2.31 16 19 C 0.08 0.76 7.45 -4.10 -0.03 0.73 16 20 N -0.66 -5.87 7.72 -114.02 -0.88 -6.75 16 21 C 0.09 0.80 7.45 -4.10 -0.03 0.77 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 1.01 7.66 -51.93 -0.40 0.61 16 28 H 0.06 1.00 7.66 -51.93 -0.40 0.60 16 29 H 0.14 1.81 6.30 -52.48 -0.33 1.48 16 30 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.34 2.11 8.92 -39.29 -0.35 1.76 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -30.87 302.82 -9.34 -40.21 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.25 Total: -1.54 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -3.30 Total: -21.41 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: -0.14 Total: -32.70 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.20 Total: -5.68 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.87 -9.34 -40.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713051499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.649 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds