Wall clock time and date at job start Mon Mar 30 2020 06:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47503 * 180.02562 * 11 10 9 13 13 C 1.35900 * 117.00356 * 180.02562 * 12 11 10 14 14 C 1.38748 * 120.05925 * 359.97438 * 13 12 11 15 15 C 1.38125 * 119.94984 * 179.97438 * 14 13 12 16 16 C 1.38228 * 120.10099 * 0.02562 * 15 14 13 17 17 C 1.38484 * 120.05541 * 0.02562 * 16 15 14 18 18 C 1.38092 * 120.02474 * 359.73444 * 17 16 15 19 19 C 1.51191 * 108.24994 * 180.02562 * 17 16 15 20 20 N 1.48047 * 105.67553 * 342.48307 * 19 17 16 21 21 C 1.48046 * 103.89172 * 27.62506 * 20 19 17 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.08007 * 120.02295 * 359.95533 * 14 13 12 30 30 H 1.07996 * 119.94586 * 179.97438 * 15 14 13 31 31 H 1.07999 * 120.01095 * 180.25178 * 18 17 16 32 32 H 1.08995 * 110.20752 * 223.43096 * 19 17 16 33 33 H 1.09007 * 110.27972 * 101.56706 * 19 17 16 34 34 H 1.00902 * 111.00337 * 146.98869 * 20 19 17 35 35 H 1.08998 * 110.21148 * 213.32469 * 21 20 19 36 36 H 1.08999 * 110.27651 * 91.46215 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 8 2.4090 -6.0732 0.0018 13 6 1.8896 -7.3291 0.0019 14 6 0.5143 -7.5123 0.0019 15 6 -0.0112 -8.7897 0.0015 16 6 0.8310 -9.8858 0.0015 17 6 2.2041 -9.7054 0.0025 18 6 2.7335 -8.4300 -0.0020 19 6 2.8606 -11.0673 0.0016 20 7 1.8095 -12.0183 0.4291 21 6 0.5489 -11.3713 0.0000 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.8540 -5.0446 0.8914 28 1 0.8534 -5.0452 -0.8885 29 1 -0.1449 -6.6568 0.0026 30 1 -1.0817 -8.9323 0.0019 31 1 3.8043 -8.2896 -0.0053 32 1 3.6927 -11.0846 0.7054 33 1 3.2099 -11.3177 -1.0001 34 1 1.9275 -12.9139 -0.0205 35 1 -0.2515 -11.6031 0.7026 36 1 0.2769 -11.7018 -1.0024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713051499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:01 Heat of formation + Delta-G solvation = -38.183204 kcal Electronic energy + Delta-G solvation = -16721.175651 eV Core-core repulsion = 13976.121372 eV Total energy + Delta-G solvation = -2745.054279 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.53856 -39.85543 -36.70452 -35.82294 -33.71464 -32.40603 -30.44051 -29.16771 -27.98862 -25.27986 -24.61267 -22.46156 -22.19398 -21.61636 -18.86492 -18.39715 -17.63354 -17.23407 -16.72248 -16.50543 -16.40303 -15.73523 -14.99861 -14.67008 -14.52632 -14.37298 -13.99787 -13.93772 -13.50674 -13.32876 -13.15160 -12.79202 -12.62970 -12.48134 -12.33008 -12.14218 -11.66214 -11.54806 -11.48405 -11.27330 -10.57695 -10.10934 -9.64002 -8.93590 -8.23211 -6.34362 0.24519 0.35903 1.40275 1.43216 1.51193 2.12761 2.41544 2.64892 3.10575 3.30156 3.51604 3.58075 3.85133 4.01584 4.06468 4.22803 4.28301 4.41852 4.42720 4.49125 4.58269 4.69787 4.79754 4.84245 4.90579 5.02168 5.08025 5.21269 5.34414 5.37242 5.45690 5.63773 5.66873 5.74218 5.78893 6.18355 6.37219 6.42185 6.80781 7.34946 8.88654 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.072780 B = 0.003231 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.628578 B = 8664.245338 C = 9005.785304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.029 3.971 10 C -0.096 4.096 11 C 0.071 3.929 12 O -0.329 6.329 13 C 0.114 3.886 14 C -0.218 4.218 15 C -0.061 4.061 16 C -0.159 4.159 17 C -0.078 4.078 18 C -0.149 4.149 19 C 0.084 3.916 20 N -0.667 5.667 21 C 0.089 3.911 22 H 0.265 0.735 23 H 0.000 1.000 24 H 0.000 1.000 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.135 0.865 30 H 0.149 0.851 31 H 0.136 0.864 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.361 0.639 35 H 0.096 0.904 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 -23.549 -1.399 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.134 4.134 11 C -0.003 4.003 12 O -0.244 6.244 13 C 0.069 3.931 14 C -0.237 4.237 15 C -0.080 4.080 16 C -0.160 4.160 17 C -0.078 4.078 18 C -0.168 4.168 19 C -0.045 4.045 20 N -0.297 5.297 21 C -0.040 4.040 22 H 0.074 0.926 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.166 0.834 31 H 0.154 0.846 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.179 0.821 35 H 0.114 0.886 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.026 -23.231 -0.670 23.329 hybrid contribution -0.064 1.277 -0.950 1.593 sum 1.962 -21.954 -1.620 22.101 Atomic orbital electron populations 1.70070 1.07732 1.28027 1.51309 1.25963 0.95811 1.03344 0.94531 0.85481 0.78284 0.77972 0.79216 1.19170 1.20669 1.19189 1.21609 0.93641 0.92165 1.51135 0.92123 1.18902 0.94130 0.92140 0.95615 1.21439 0.98847 0.91234 1.01892 1.22889 0.91673 0.84311 1.01465 1.86033 1.37334 1.12587 1.88410 1.19198 0.92670 0.84718 0.96508 1.21425 0.93861 0.99342 1.09085 1.20506 1.00747 0.89956 0.96743 1.20823 0.94068 0.96459 1.04629 1.20584 0.95415 0.94282 0.97565 1.19780 1.00175 0.89213 1.07653 1.21432 0.95379 0.86515 1.01164 1.63475 1.01399 1.05603 1.59271 1.21352 0.94125 0.87709 1.00778 0.92598 0.98165 0.98198 0.92185 0.92256 0.91835 0.91719 0.84755 0.83362 0.84619 0.88469 0.90313 0.82126 0.88619 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 2 C 0.00 0.09 5.46 84.66 0.46 0.56 16 3 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -31.31 9.11 25.60 0.23 -31.08 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.54 4.97 29.85 0.15 1.69 16 10 C -0.10 -4.11 5.52 30.59 0.17 -3.94 16 11 C 0.07 2.57 4.74 71.98 0.34 2.92 16 12 O -0.33 -11.68 10.14 -92.43 -0.94 -12.61 16 13 C 0.11 3.57 6.69 22.51 0.15 3.72 16 14 C -0.22 -6.10 9.04 22.36 0.20 -5.90 16 15 C -0.06 -1.41 10.04 22.24 0.22 -1.19 16 16 C -0.16 -3.48 6.26 -19.65 -0.12 -3.61 16 17 C -0.08 -1.79 6.26 -19.68 -0.12 -1.92 16 18 C -0.15 -4.05 9.98 22.35 0.22 -3.83 16 19 C 0.08 1.35 7.45 85.49 0.64 1.99 16 20 N -0.67 -9.81 7.72 -514.66 -3.97 -13.78 16 21 C 0.09 1.36 7.45 85.50 0.64 2.00 16 22 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 23 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 24 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 25 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.06 2.21 7.66 -2.39 -0.02 2.19 16 28 H 0.06 2.23 7.66 -2.39 -0.02 2.21 16 29 H 0.13 3.65 6.30 -2.91 -0.02 3.63 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 31 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.36 3.21 8.92 -89.69 -0.80 2.41 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -66.09 302.82 0.86 -65.24 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.27 Total: 9.56 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 3.18 Total: -38.59 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -3.69 Total: -69.81 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.94 Total: -12.61 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.09 0.86 -65.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713051499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.055 kcal (2) G-P(sol) polarization free energy of solvation -66.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds