Wall clock time and date at job start Mon Mar 30 2020 06:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00354 * 2 1 4 4 H 1.48499 * 109.46920 * 239.99969 * 3 2 1 5 5 H 1.48497 * 109.47022 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47011 * 119.99906 * 3 2 1 7 7 C 1.37882 * 119.99405 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99438 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00252 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47590 * 300.00408 * 9 7 2 11 11 O 1.42901 * 109.46986 * 60.00255 * 9 7 2 12 12 C 1.50698 * 109.47108 * 180.02562 * 9 7 2 13 13 C 1.38126 * 120.03961 * 265.21109 * 12 9 7 14 14 C 1.38264 * 120.07735 * 180.27188 * 13 12 9 15 15 C 1.38309 * 120.14702 * 359.75394 * 14 13 12 16 16 C 1.38075 * 120.07579 * 0.02562 * 15 14 13 17 17 C 1.38883 * 120.03824 * 85.00763 * 12 9 7 18 18 N 1.39681 * 120.07442 * 359.97438 * 17 12 9 19 19 C 1.47845 * 110.99945 * 118.88484 * 18 17 12 20 20 C 1.54908 * 104.79717 * 146.36348 * 19 18 17 21 21 C 1.55147 * 101.65049 * 322.93105 * 20 19 18 22 22 C 1.47439 * 110.99858 * 239.72564 * 18 17 12 23 23 H 0.97005 * 119.99617 * 0.02562 * 1 2 3 24 24 H 0.96702 * 114.00219 * 59.99944 * 11 9 7 25 25 H 1.08008 * 119.96473 * 0.02711 * 13 12 9 26 26 H 1.07999 * 119.92478 * 179.76860 * 14 13 12 27 27 H 1.08003 * 119.96036 * 179.97438 * 15 14 13 28 28 H 1.08006 * 120.04007 * 179.97438 * 16 15 14 29 29 H 1.09005 * 110.37246 * 27.53306 * 19 18 17 30 30 H 1.08998 * 110.37354 * 265.19543 * 19 18 17 31 31 H 1.08996 * 110.99351 * 204.83721 * 20 19 18 32 32 H 1.09002 * 110.98650 * 81.01419 * 20 19 18 33 33 H 1.09000 * 110.70281 * 154.03642 * 21 20 19 34 34 H 1.09000 * 110.70143 * 277.26807 * 21 20 19 35 35 H 1.09003 * 109.88723 * 117.33937 * 22 18 17 36 36 H 1.08999 * 109.89041 * 356.15327 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6245 -2.5563 0.8919 11 8 0.4290 -2.5756 -1.1648 12 6 2.2301 -3.6446 0.0027 13 6 2.6036 -4.2362 -1.1883 14 6 3.4976 -5.2908 -1.1878 15 6 4.0249 -5.7539 0.0040 16 6 3.6594 -5.1642 1.1978 17 6 2.7614 -4.1040 1.2009 18 7 2.3897 -3.5051 2.4067 19 6 1.7307 -4.4801 3.3016 20 6 2.1488 -4.0514 4.7303 21 6 3.6137 -3.5932 4.5038 22 6 3.5632 -2.9470 3.1033 23 1 -0.4850 0.8401 -0.0004 24 1 0.9208 -2.5308 -1.9962 25 1 2.1937 -3.8770 -2.1208 26 1 3.7850 -5.7540 -2.1202 27 1 4.7227 -6.5782 0.0010 28 1 4.0712 -5.5265 2.1282 29 1 2.0843 -5.4892 3.0895 30 1 0.6478 -4.4254 3.1907 31 1 2.1056 -4.8948 5.4194 32 1 1.5323 -3.2261 5.0864 33 1 3.9091 -2.8613 5.2556 34 1 4.2901 -4.4479 4.5097 35 1 3.4592 -1.8660 3.1973 36 1 4.4715 -3.1877 2.5509 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535720901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:45 Heat of formation + Delta-G solvation = -35.131227 kcal Electronic energy + Delta-G solvation = -18430.672991 eV Core-core repulsion = 15685.751056 eV Total energy + Delta-G solvation = -2744.921935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22502 -38.83169 -37.19279 -34.23904 -33.39245 -31.91746 -29.82935 -29.57851 -28.23503 -24.97136 -23.80279 -22.06966 -21.78082 -21.31584 -19.06130 -18.22619 -17.06280 -16.89716 -16.63484 -16.01287 -15.68437 -15.15252 -14.75080 -14.56707 -14.41055 -14.18003 -13.83588 -13.37702 -13.17698 -12.83734 -12.80155 -12.77455 -12.48942 -12.13277 -12.09161 -12.04229 -11.93244 -11.54788 -11.16757 -10.69671 -10.32249 -9.58848 -9.28000 -9.13829 -8.05990 -6.29231 0.48868 0.63234 1.38716 1.40499 1.48498 2.41274 2.93855 3.07827 3.18117 3.79793 3.85005 4.06254 4.10715 4.18828 4.27516 4.36227 4.38721 4.58564 4.63011 4.71025 4.79890 4.91204 4.97561 5.00965 5.03299 5.12397 5.19675 5.36000 5.47088 5.60813 5.66519 5.72233 5.99307 6.09777 6.12792 6.17807 6.70641 6.78044 7.36372 7.55842 8.97314 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.009685 C = 0.007455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.683782 B = 2890.314911 C = 3755.070691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.043 0.957 9 C 0.275 3.725 10 H 0.037 0.963 11 O -0.582 6.582 12 C -0.087 4.087 13 C -0.132 4.132 14 C -0.122 4.122 15 C -0.127 4.127 16 C -0.153 4.153 17 C 0.073 3.927 18 N -0.511 5.511 19 C 0.043 3.957 20 C -0.119 4.119 21 C -0.128 4.128 22 C 0.051 3.949 23 H 0.259 0.741 24 H 0.353 0.647 25 H 0.122 0.878 26 H 0.148 0.852 27 H 0.151 0.849 28 H 0.133 0.867 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.348 -10.966 5.690 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.174 4.174 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.061 0.939 9 C 0.218 3.782 10 H 0.054 0.946 11 O -0.387 6.387 12 C -0.089 4.089 13 C -0.150 4.150 14 C -0.140 4.140 15 C -0.145 4.145 16 C -0.173 4.173 17 C -0.021 4.021 18 N -0.233 5.233 19 C -0.083 4.083 20 C -0.157 4.157 21 C -0.166 4.166 22 C -0.076 4.076 23 H 0.068 0.932 24 H 0.199 0.801 25 H 0.140 0.860 26 H 0.166 0.834 27 H 0.169 0.831 28 H 0.151 0.849 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.355 -10.491 6.050 14.712 hybrid contribution 0.916 0.756 -0.395 1.252 sum 9.271 -9.735 5.655 14.584 Atomic orbital electron populations 1.70210 1.07438 1.27069 1.49168 1.25798 0.95425 1.02350 0.93840 0.85713 0.78456 0.79095 0.78891 1.19390 1.20852 1.19686 1.21525 0.92294 0.91681 1.52789 0.93867 1.17965 0.86811 0.89095 0.84370 0.94570 1.86558 1.39379 1.96439 1.16295 1.21126 0.97886 0.96659 0.93197 1.21065 0.99139 0.97557 0.97271 1.21390 0.96781 0.96331 0.99456 1.21261 1.00803 1.00813 0.91628 1.21761 0.98987 0.96921 0.99600 1.18877 0.97489 0.94958 0.90820 1.60822 1.26421 1.33356 1.02674 1.23174 0.98960 0.93763 0.92367 1.22684 0.95972 1.01966 0.95085 1.22770 0.97233 1.01195 0.95435 1.22807 0.90720 0.99423 0.94606 0.93168 0.80074 0.86047 0.83400 0.83094 0.84887 0.92453 0.92316 0.87978 0.91484 0.89331 0.89694 0.92805 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.73 12.84 21.45 0.28 -55.46 16 2 C 0.03 1.59 5.40 84.66 0.46 2.05 16 3 Si 0.95 45.18 29.54 68.60 2.03 47.21 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.37 8.75 25.60 0.22 -31.15 16 8 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 9 C 0.27 15.06 2.76 29.10 0.08 15.15 16 10 H 0.04 2.28 7.62 -2.39 -0.02 2.27 16 11 O -0.58 -32.08 12.39 -148.98 -1.85 -33.93 16 12 C -0.09 -3.97 5.02 -19.74 -0.10 -4.06 16 13 C -0.13 -5.07 9.30 22.25 0.21 -4.86 16 14 C -0.12 -3.66 10.04 22.29 0.22 -3.44 16 15 C -0.13 -3.50 10.04 22.25 0.22 -3.28 16 16 C -0.15 -4.80 7.81 22.40 0.17 -4.63 16 17 C 0.07 2.90 4.61 38.21 0.18 3.08 16 18 N -0.51 -20.05 4.21 -685.17 -2.88 -22.93 16 19 C 0.04 1.37 6.55 86.77 0.57 1.94 16 20 C -0.12 -2.89 7.08 31.98 0.23 -2.66 16 21 C -0.13 -3.01 6.94 31.78 0.22 -2.79 16 22 C 0.05 1.71 6.54 86.65 0.57 2.27 16 23 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 24 H 0.35 17.08 7.32 -74.06 -0.54 16.53 16 25 H 0.12 4.46 6.41 -2.91 -0.02 4.44 16 26 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 27 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 28 H 0.13 3.47 7.72 -2.91 -0.02 3.45 16 29 H 0.06 1.63 6.79 -2.38 -0.02 1.62 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.05 1.70 7.02 -2.39 -0.02 1.69 16 Total: -1.00 -70.43 295.02 1.35 -69.07 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.53 Total: 28.41 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 3.25 Total: -32.38 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -2.61 Total: -78.38 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -1.85 Total: -33.93 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -70.43 1.35 -69.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535720901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.941 kcal (2) G-P(sol) polarization free energy of solvation -70.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds