Wall clock time and date at job start Mon Mar 30 2020 06:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99604 * 2 1 4 4 H 1.48498 * 109.47482 * 89.99560 * 3 2 1 5 5 H 1.48505 * 109.46988 * 209.99991 * 3 2 1 6 6 H 1.48499 * 109.46976 * 329.99502 * 3 2 1 7 7 C 1.37875 * 120.00749 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00792 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99662 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47036 * 60.00053 * 9 7 2 11 11 O 1.42897 * 109.47245 * 299.99886 * 9 7 2 12 12 C 1.50703 * 109.47493 * 179.97438 * 9 7 2 13 13 C 1.38123 * 120.03616 * 96.72121 * 12 9 7 14 14 C 1.38259 * 120.07229 * 179.97438 * 13 12 9 15 15 C 1.38311 * 120.15333 * 0.03958 * 14 13 12 16 16 C 1.38085 * 120.07012 * 359.97438 * 15 14 13 17 17 C 1.38891 * 120.03753 * 276.45212 * 12 9 7 18 18 N 1.39676 * 120.07411 * 0.02562 * 17 12 9 19 19 C 1.48534 * 110.99928 * 174.99191 * 18 17 12 20 20 C 1.54937 * 103.22553 * 159.72235 * 19 18 17 21 21 C 1.54596 * 102.92145 * 322.58629 * 20 19 18 22 22 C 1.47903 * 111.00259 * 292.38977 * 18 17 12 23 23 H 0.97003 * 119.99287 * 180.02562 * 1 2 3 24 24 H 0.96698 * 114.00240 * 299.99860 * 11 9 7 25 25 H 1.08000 * 119.96574 * 359.97438 * 13 12 9 26 26 H 1.08002 * 119.92689 * 180.02562 * 14 13 12 27 27 H 1.08004 * 119.96413 * 180.02562 * 15 14 13 28 28 H 1.08002 * 120.03502 * 179.97438 * 16 15 14 29 29 H 1.09000 * 110.66869 * 278.15678 * 19 18 17 30 30 H 1.08994 * 110.66378 * 41.28828 * 19 18 17 31 31 H 1.09001 * 110.72236 * 204.22903 * 20 19 18 32 32 H 1.08996 * 110.72835 * 80.94421 * 20 19 18 33 33 H 1.09009 * 110.30577 * 263.04017 * 21 20 19 34 34 H 1.08998 * 110.30884 * 140.88012 * 21 20 19 35 35 H 1.09006 * 109.91259 * 333.50597 * 22 18 17 36 36 H 1.08996 * 109.91744 * 94.80243 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0467 1.4000 5 1 3.5466 1.4403 -0.7001 6 1 1.4464 2.6527 -0.7001 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2513 -2.4991 0.0005 10 1 0.6249 -2.5571 -0.8897 11 8 0.4293 -2.5746 1.1670 12 6 2.2306 -3.6446 0.0005 13 6 2.5735 -4.2610 1.1881 14 6 3.4715 -5.3123 1.1889 15 6 4.0300 -5.7498 0.0016 16 6 3.6917 -5.1378 -1.1891 17 6 2.7851 -4.0852 -1.1942 18 7 2.4366 -3.4674 -2.3975 19 6 3.2321 -4.0141 -3.5264 20 6 2.3873 -3.6388 -4.7698 21 6 0.9361 -3.8285 -4.2718 22 6 1.0212 -3.7294 -2.7375 23 1 -0.4849 -0.8401 0.0004 24 1 0.9210 -2.5291 1.9983 25 1 2.1397 -3.9214 2.1170 26 1 3.7376 -5.7929 2.1187 27 1 4.7308 -6.5716 0.0057 28 1 4.1285 -5.4796 -2.1158 29 1 4.2130 -3.5407 -3.5707 30 1 3.3296 -5.0962 -3.4398 31 1 2.6015 -4.3127 -5.5994 32 1 2.5639 -2.6026 -5.0578 33 1 0.5596 -4.8078 -4.5674 34 1 0.2946 -3.0408 -4.6668 35 1 0.6986 -4.6677 -2.2863 36 1 0.3964 -2.9096 -2.3831 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535720902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:48 Heat of formation + Delta-G solvation = -33.510174 kcal Electronic energy + Delta-G solvation = -18554.175407 eV Core-core repulsion = 15809.323767 eV Total energy + Delta-G solvation = -2744.851641 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45855 -38.87326 -37.57763 -34.30102 -33.57816 -32.28406 -29.90434 -29.51885 -27.89851 -25.04318 -24.14453 -22.36525 -21.66121 -21.27107 -19.35186 -18.64794 -17.23056 -17.15148 -16.40101 -15.99964 -15.64226 -15.32345 -14.98253 -14.77426 -14.48373 -14.27066 -14.05419 -13.63613 -13.15203 -12.94992 -12.66189 -12.64146 -12.34529 -12.16975 -12.10303 -11.97164 -11.89540 -11.48492 -11.17696 -10.65126 -10.45835 -10.17110 -9.55790 -8.75696 -8.50476 -6.36375 0.48828 0.56167 1.49375 1.58342 1.76620 2.55255 2.81932 3.05561 3.20241 3.62134 3.73721 3.93099 3.99166 4.06759 4.10817 4.22308 4.30907 4.49175 4.51128 4.60129 4.70309 4.79194 4.88374 4.93169 4.95055 5.05286 5.11336 5.21155 5.29319 5.46272 5.62606 5.78043 5.88923 5.91643 6.11297 6.19423 6.48249 6.63146 7.12058 7.52927 8.80589 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.017179 B = 0.009998 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.527812 B = 2799.984825 C = 3651.513868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.016 4.016 3 Si 1.114 2.886 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.615 4.615 8 H 0.031 0.969 9 C 0.241 3.759 10 H 0.053 0.947 11 O -0.594 6.594 12 C -0.115 4.115 13 C -0.122 4.122 14 C -0.142 4.142 15 C -0.112 4.112 16 C -0.176 4.176 17 C 0.083 3.917 18 N -0.484 5.484 19 C 0.025 3.975 20 C -0.114 4.114 21 C -0.123 4.123 22 C 0.042 3.958 23 H 0.265 0.735 24 H 0.360 0.640 25 H 0.118 0.882 26 H 0.146 0.854 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.626 -11.877 -6.343 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.217 4.217 3 Si 0.936 3.064 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.653 4.653 8 H 0.050 0.950 9 C 0.185 3.815 10 H 0.070 0.930 11 O -0.400 6.400 12 C -0.118 4.118 13 C -0.140 4.140 14 C -0.160 4.160 15 C -0.130 4.130 16 C -0.197 4.197 17 C -0.015 4.015 18 N -0.200 5.200 19 C -0.101 4.101 20 C -0.152 4.152 21 C -0.161 4.161 22 C -0.083 4.083 23 H 0.076 0.924 24 H 0.207 0.793 25 H 0.136 0.864 26 H 0.164 0.836 27 H 0.172 0.828 28 H 0.168 0.832 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.010 -9.720 -6.793 13.775 hybrid contribution 0.158 -1.951 0.703 2.080 sum 7.168 -11.671 -6.090 14.989 Atomic orbital electron populations 1.70756 1.07714 1.30885 1.46611 1.27124 0.96540 1.05866 0.92147 0.82987 0.74048 0.71725 0.77606 1.19855 1.20388 1.20698 1.22403 0.93434 0.92836 1.56627 0.95034 1.18636 0.87690 0.90451 0.84748 0.92975 1.86469 1.40044 1.96578 1.16908 1.20727 1.00395 0.97363 0.93280 1.20972 0.98885 0.97212 0.96964 1.21319 0.97699 0.97401 0.99592 1.21291 0.99895 1.00268 0.91536 1.21640 1.01767 0.95830 1.00415 1.19043 0.98600 0.93124 0.90712 1.61751 1.04535 1.52431 1.01329 1.23578 0.97930 0.99161 0.89403 1.22490 0.93020 1.02732 0.96956 1.22418 0.98608 1.03303 0.91767 1.22843 0.88807 0.98829 0.97847 0.92426 0.79301 0.86426 0.83610 0.82761 0.83245 0.89782 0.90849 0.87439 0.91421 0.88991 0.90856 0.94304 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.43 13.53 21.45 0.29 -58.14 16 2 C -0.02 -0.93 5.40 84.65 0.46 -0.47 16 3 Si 1.11 52.68 29.90 68.60 2.05 54.73 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.62 -36.13 8.75 25.60 0.22 -35.90 16 8 H 0.03 1.91 7.74 -2.91 -0.02 1.89 16 9 C 0.24 12.98 2.31 29.10 0.07 13.05 16 10 H 0.05 3.04 4.27 -2.39 -0.01 3.03 16 11 O -0.59 -31.91 11.63 -148.98 -1.73 -33.64 16 12 C -0.12 -5.28 4.91 -19.73 -0.10 -5.38 16 13 C -0.12 -4.81 9.30 22.25 0.21 -4.60 16 14 C -0.14 -4.41 10.04 22.29 0.22 -4.18 16 15 C -0.11 -3.16 10.04 22.25 0.22 -2.93 16 16 C -0.18 -5.62 8.92 22.40 0.20 -5.42 16 17 C 0.08 3.34 5.20 38.21 0.20 3.54 16 18 N -0.48 -18.93 4.94 -682.80 -3.37 -22.30 16 19 C 0.03 0.71 5.60 86.65 0.49 1.20 16 20 C -0.11 -2.70 7.06 31.80 0.22 -2.47 16 21 C -0.12 -3.30 6.93 31.47 0.22 -3.08 16 22 C 0.04 1.57 5.47 86.44 0.47 2.05 16 23 H 0.27 17.33 6.47 -92.71 -0.60 16.73 16 24 H 0.36 17.37 7.34 -74.06 -0.54 16.82 16 25 H 0.12 4.47 6.39 -2.91 -0.02 4.45 16 26 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 27 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.15 3.79 5.55 -2.91 -0.02 3.77 16 29 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.07 1.74 5.89 -2.39 -0.01 1.73 16 31 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.04 1.44 7.76 -2.38 -0.02 1.42 16 36 H 0.05 2.31 5.89 -2.39 -0.01 2.30 16 Total: -1.00 -72.39 285.37 1.06 -71.33 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.72 Total: 32.64 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 3.10 Total: -44.61 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -3.08 Total: -80.44 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.73 Total: -33.64 kcal Atomic # 14 Polarization: 52.68 SS G_CDS: 2.05 Total: 54.73 kcal Total: -72.39 1.06 -71.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535720902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.816 kcal (2) G-P(sol) polarization free energy of solvation -72.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds