Wall clock time and date at job start Mon Mar 30 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35943 * 116.99742 * 2 1 4 4 C 1.39285 * 119.73020 * 0.02562 * 3 2 1 5 5 C 1.36558 * 120.47703 * 179.97438 * 4 3 2 6 6 C 1.39648 * 119.84059 * 359.97438 * 5 4 3 7 7 C 1.46558 * 133.93966 * 180.02562 * 6 5 4 8 8 C 1.34189 * 107.01172 * 179.97438 * 7 6 5 9 9 C 1.50692 * 125.04333 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47170 * 155.00439 * 9 8 7 11 11 O 1.42902 * 109.47277 * 35.00413 * 9 8 7 12 12 C 1.50702 * 109.47373 * 275.00580 * 9 8 7 13 13 H 1.08000 * 120.00015 * 359.97438 * 12 9 8 14 14 C 1.37878 * 120.00023 * 180.02562 * 12 9 8 15 15 N 1.31508 * 120.00407 * 179.97438 * 14 12 9 16 16 Si 1.86806 * 119.99915 * 359.97438 * 14 12 9 17 17 H 1.48500 * 109.46913 * 90.00340 * 16 14 12 18 18 H 1.48497 * 109.47161 * 209.99932 * 16 14 12 19 19 H 1.48495 * 109.47153 * 330.00168 * 16 14 12 20 20 N 1.36962 * 109.91531 * 0.02562 * 8 7 6 21 21 H 0.97006 * 125.07196 * 179.97438 * 20 8 7 22 22 C 1.37695 * 109.86082 * 359.97438 * 20 8 7 23 23 C 1.38211 * 119.73105 * 179.71125 * 3 2 1 24 24 H 1.09004 * 109.47257 * 299.99332 * 1 2 3 25 25 H 1.08996 * 109.47620 * 60.00179 * 1 2 3 26 26 H 1.09009 * 109.46878 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.75727 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.07693 * 179.97438 * 5 4 3 29 29 H 1.08009 * 126.49803 * 359.97098 * 7 6 5 30 30 H 0.96702 * 114.00099 * 300.00260 * 11 9 8 31 31 H 0.96994 * 120.01037 * 179.97438 * 15 14 12 32 32 H 1.08002 * 120.13007 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2819 2.3758 0.0005 5 6 1.8859 3.6005 0.0011 6 6 3.2796 3.6880 0.0016 7 6 4.2285 4.8049 0.0027 8 6 5.4606 4.2733 0.0034 9 6 6.7439 5.0633 0.0040 10 1 7.5413 4.4607 0.4387 11 8 6.5706 6.2529 0.7768 12 6 7.1074 5.4323 -1.4112 13 1 6.4729 5.1250 -2.2293 14 6 8.2506 6.1612 -1.6616 15 7 8.5682 6.4828 -2.8966 16 14 9.3485 6.6921 -0.2465 17 1 10.3704 5.6448 0.0070 18 1 10.0235 7.9680 -0.5954 19 1 8.5246 6.8855 0.9737 20 7 5.3789 2.9061 0.0022 21 1 6.1381 2.3023 0.0020 22 6 4.0582 2.5165 0.0013 23 6 3.4266 1.2772 0.0060 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 0.2040 2.3096 0.0005 28 1 1.2871 4.4993 0.0011 29 1 3.9828 5.8567 0.0029 30 1 5.8752 6.8383 0.4470 31 1 9.3723 6.9959 -3.0728 32 1 4.0126 0.3700 0.0112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535757468.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:48 Heat of formation + Delta-G solvation = -27.437491 kcal Electronic energy + Delta-G solvation = -17153.042890 eV Core-core repulsion = 14272.621486 eV Total energy + Delta-G solvation = -2880.421404 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.90194 -39.14912 -36.43250 -35.08614 -32.39569 -31.46969 -29.29952 -29.03185 -27.31488 -26.31917 -23.31588 -21.66768 -21.00837 -19.57799 -18.11843 -17.60639 -16.45957 -15.95820 -15.66549 -15.38577 -14.93429 -14.24884 -13.86741 -13.74613 -13.39351 -13.13431 -13.03376 -12.59370 -12.11900 -12.01874 -11.80923 -11.51906 -11.14186 -10.77649 -10.55049 -10.41537 -10.27876 -9.32717 -9.01818 -8.78369 -8.59554 -7.72673 -7.00241 -6.23924 -4.38185 1.48134 1.91368 3.15694 3.29976 3.32211 3.41098 3.64663 3.84041 4.19144 4.41591 4.91271 5.07773 5.09940 5.10807 5.16064 5.37606 5.44125 5.51874 5.68632 5.75075 5.83158 6.06358 6.28485 6.33095 6.55271 6.64979 6.78281 6.95214 7.32671 7.35906 7.54877 7.66680 8.01698 8.18600 8.67633 8.86301 9.36619 10.85766 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.052711 B = 0.004876 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.075683 B = 5740.910881 C = 5825.878358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.322 6.322 3 C 0.128 3.872 4 C -0.230 4.230 5 C -0.038 4.038 6 C -0.128 4.128 7 C -0.213 4.213 8 C 0.107 3.893 9 C 0.249 3.751 10 H 0.065 0.935 11 O -0.568 6.568 12 C -0.561 4.561 13 H 0.077 0.923 14 C 0.087 3.913 15 N -0.884 5.884 16 Si 0.869 3.131 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.217 1.217 20 N -0.586 5.586 21 H 0.414 0.586 22 C 0.127 3.873 23 C -0.168 4.168 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.363 0.637 31 H 0.268 0.732 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.012 -8.465 6.739 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C 0.083 3.917 4 C -0.250 4.250 5 C -0.056 4.056 6 C -0.133 4.133 7 C -0.237 4.237 8 C -0.001 4.001 9 C 0.191 3.809 10 H 0.082 0.918 11 O -0.374 6.374 12 C -0.599 4.599 13 H 0.095 0.905 14 C -0.118 4.118 15 N -0.520 5.520 16 Si 0.694 3.306 17 H -0.212 1.212 18 H -0.218 1.218 19 H -0.139 1.139 20 N -0.190 5.190 21 H 0.250 0.750 22 C 0.018 3.982 23 C -0.190 4.190 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.112 0.888 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.160 0.840 30 H 0.211 0.789 31 H 0.077 0.923 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.209 -8.847 6.982 16.616 hybrid contribution 0.308 0.267 -0.035 0.409 sum -11.901 -8.580 6.947 16.233 Atomic orbital electron populations 1.22965 0.78899 1.03288 1.01236 1.86005 1.20912 1.27267 1.89452 1.18303 0.91133 0.83776 0.98514 1.20610 0.99312 0.92131 1.12917 1.20008 0.92439 0.96792 0.96386 1.19207 0.92870 0.92980 1.08202 1.21175 0.89978 0.97453 1.15078 1.21748 0.98818 0.81698 0.97861 1.18431 0.86961 0.82766 0.92756 0.91778 1.86727 1.59226 1.33526 1.57894 1.21330 1.10131 1.37560 0.90831 0.90470 1.24981 0.96985 0.93948 0.95902 1.69927 1.25405 1.37061 1.19644 0.87061 0.80062 0.77905 0.85543 1.21211 1.21828 1.13929 1.41778 1.05408 1.06758 1.65029 0.74982 1.17768 0.84302 0.93899 1.02244 1.18847 0.91412 0.95141 1.13574 0.92892 0.92830 0.88759 0.85986 0.86029 0.84050 0.78943 0.92259 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.80 101.05 0.99 1.27 16 2 O -0.32 -4.32 10.49 -19.56 -0.21 -4.53 16 3 C 0.13 1.93 6.68 -39.20 -0.26 1.67 16 4 C -0.23 -3.21 8.96 -39.80 -0.36 -3.57 16 5 C -0.04 -0.58 10.05 -39.66 -0.40 -0.98 16 6 C -0.13 -2.33 6.37 -105.10 -0.67 -3.00 16 7 C -0.21 -4.13 10.37 -37.66 -0.39 -4.52 16 8 C 0.11 2.18 6.10 -81.73 -0.50 1.69 16 9 C 0.25 5.63 2.83 -29.04 -0.08 5.55 16 10 H 0.06 1.43 7.57 -51.93 -0.39 1.04 16 11 O -0.57 -12.35 10.00 -35.23 -0.35 -12.70 16 12 C -0.56 -15.06 9.33 -34.44 -0.32 -15.38 16 13 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 14 C 0.09 2.42 5.47 -17.82 -0.10 2.33 16 15 N -0.88 -26.16 13.96 55.43 0.77 -25.39 16 16 Si 0.87 20.73 26.99 -169.99 -4.59 16.14 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.22 -5.03 5.31 56.52 0.30 -4.73 16 20 N -0.59 -10.72 6.08 -6.94 -0.04 -10.76 16 21 H 0.41 6.51 8.96 -40.82 -0.37 6.14 16 22 C 0.13 2.28 7.27 -84.00 -0.61 1.67 16 23 C -0.17 -2.71 10.01 -39.27 -0.39 -3.10 16 24 H 0.05 0.41 7.64 -51.93 -0.40 0.02 16 25 H 0.05 0.43 7.64 -51.93 -0.40 0.03 16 26 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 27 H 0.12 1.33 6.24 -52.49 -0.33 1.01 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.14 2.49 7.48 -52.48 -0.39 2.10 16 30 H 0.36 6.93 8.08 45.56 0.37 7.30 16 31 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 274.45 15.07 4.14 4.14 Total: -1.00 -31.76 274.45 -6.20 -37.96 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -2.83 Total: 11.53 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -3.09 Total: -16.38 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.73 Total: -36.15 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.56 Total: -17.23 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.59 Total: 16.14 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.76 -6.20 -37.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535757468.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.520 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds