Wall clock time and date at job start Mon Mar 30 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35943 * 116.99742 * 2 1 4 4 C 1.39285 * 119.73020 * 0.02562 * 3 2 1 5 5 C 1.36558 * 120.47703 * 179.97438 * 4 3 2 6 6 C 1.39648 * 119.84059 * 359.97438 * 5 4 3 7 7 C 1.46558 * 133.93966 * 180.02562 * 6 5 4 8 8 C 1.34189 * 107.01172 * 179.97438 * 7 6 5 9 9 C 1.50692 * 125.04333 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47170 * 155.00439 * 9 8 7 11 11 O 1.42902 * 109.47277 * 35.00413 * 9 8 7 12 12 C 1.50702 * 109.47373 * 275.00580 * 9 8 7 13 13 H 1.08000 * 120.00015 * 359.97438 * 12 9 8 14 14 C 1.37878 * 120.00023 * 180.02562 * 12 9 8 15 15 N 1.31508 * 120.00407 * 179.97438 * 14 12 9 16 16 Si 1.86806 * 119.99915 * 359.97438 * 14 12 9 17 17 H 1.48500 * 109.46913 * 90.00340 * 16 14 12 18 18 H 1.48497 * 109.47161 * 209.99932 * 16 14 12 19 19 H 1.48495 * 109.47153 * 330.00168 * 16 14 12 20 20 N 1.36962 * 109.91531 * 0.02562 * 8 7 6 21 21 H 0.97006 * 125.07196 * 179.97438 * 20 8 7 22 22 C 1.37695 * 109.86082 * 359.97438 * 20 8 7 23 23 C 1.38211 * 119.73105 * 179.71125 * 3 2 1 24 24 H 1.09004 * 109.47257 * 299.99332 * 1 2 3 25 25 H 1.08996 * 109.47620 * 60.00179 * 1 2 3 26 26 H 1.09009 * 109.46878 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.75727 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.07693 * 179.97438 * 5 4 3 29 29 H 1.08009 * 126.49803 * 359.97098 * 7 6 5 30 30 H 0.96702 * 114.00099 * 300.00260 * 11 9 8 31 31 H 0.96994 * 120.01037 * 179.97438 * 15 14 12 32 32 H 1.08002 * 120.13007 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2819 2.3758 0.0005 5 6 1.8859 3.6005 0.0011 6 6 3.2796 3.6880 0.0016 7 6 4.2285 4.8049 0.0027 8 6 5.4606 4.2733 0.0034 9 6 6.7439 5.0633 0.0040 10 1 7.5413 4.4607 0.4387 11 8 6.5706 6.2529 0.7768 12 6 7.1074 5.4323 -1.4112 13 1 6.4729 5.1250 -2.2293 14 6 8.2506 6.1612 -1.6616 15 7 8.5682 6.4828 -2.8966 16 14 9.3485 6.6921 -0.2465 17 1 10.3704 5.6448 0.0070 18 1 10.0235 7.9680 -0.5954 19 1 8.5246 6.8855 0.9737 20 7 5.3789 2.9061 0.0022 21 1 6.1381 2.3023 0.0020 22 6 4.0582 2.5165 0.0013 23 6 3.4266 1.2772 0.0060 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 0.2040 2.3096 0.0005 28 1 1.2871 4.4993 0.0011 29 1 3.9828 5.8567 0.0029 30 1 5.8752 6.8383 0.4470 31 1 9.3723 6.9959 -3.0728 32 1 4.0126 0.3700 0.0112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535757468.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:48 Heat of formation + Delta-G solvation = -50.668150 kcal Electronic energy + Delta-G solvation = -17154.050247 eV Core-core repulsion = 14272.621486 eV Total energy + Delta-G solvation = -2881.428761 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.22445 -40.25495 -38.04052 -36.40785 -34.49600 -32.74681 -30.80643 -30.35152 -28.64902 -27.50640 -24.98934 -23.05324 -22.25626 -21.06585 -19.59139 -19.23600 -17.98374 -17.16825 -16.88095 -16.57741 -16.45913 -15.86790 -15.36974 -15.21538 -14.92127 -14.54987 -14.28702 -14.06161 -13.77897 -13.17702 -13.08918 -12.89921 -12.71607 -12.53449 -12.02092 -11.64471 -11.61085 -11.29374 -10.88769 -10.49157 -10.27913 -9.00833 -8.40723 -8.32738 -6.56059 0.22897 0.68586 1.40941 1.47154 1.74871 1.85010 2.01492 2.41497 2.68241 2.94317 3.00191 3.78615 3.94291 3.97290 4.17036 4.22773 4.44271 4.48159 4.48603 4.59659 4.71845 4.78350 4.86236 5.02488 5.18665 5.32436 5.34946 5.53876 5.67866 5.97767 6.03198 6.18789 6.53505 6.56111 6.70927 7.05770 7.24791 8.75873 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.052711 B = 0.004876 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.075683 B = 5740.910881 C = 5825.878358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.136 3.864 4 C -0.222 4.222 5 C -0.038 4.038 6 C -0.159 4.159 7 C -0.214 4.214 8 C 0.075 3.925 9 C 0.261 3.739 10 H 0.068 0.932 11 O -0.568 6.568 12 C -0.559 4.559 13 H 0.032 0.968 14 C 0.034 3.966 15 N -0.934 5.934 16 Si 0.939 3.061 17 H -0.281 1.281 18 H -0.294 1.294 19 H -0.203 1.203 20 N -0.587 5.587 21 H 0.420 0.580 22 C 0.114 3.886 23 C -0.188 4.188 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.119 0.881 27 H 0.159 0.841 28 H 0.147 0.853 29 H 0.152 0.848 30 H 0.375 0.625 31 H 0.270 0.730 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.948 -9.184 8.327 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.089 3.911 4 C -0.242 4.242 5 C -0.056 4.056 6 C -0.163 4.163 7 C -0.238 4.238 8 C -0.033 4.033 9 C 0.202 3.798 10 H 0.086 0.914 11 O -0.375 6.375 12 C -0.597 4.597 13 H 0.050 0.950 14 C -0.167 4.167 15 N -0.572 5.572 16 Si 0.762 3.238 17 H -0.207 1.207 18 H -0.221 1.221 19 H -0.125 1.125 20 N -0.192 5.192 21 H 0.258 0.742 22 C 0.006 3.994 23 C -0.210 4.210 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.137 0.863 27 H 0.176 0.824 28 H 0.165 0.835 29 H 0.169 0.831 30 H 0.224 0.776 31 H 0.079 0.921 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.173 -9.587 8.577 19.140 hybrid contribution 0.655 0.352 -0.582 0.944 sum -13.518 -9.236 7.995 18.220 Atomic orbital electron populations 1.23353 0.76287 1.05493 1.02408 1.86010 1.23581 1.26404 1.88916 1.18496 0.90992 0.84930 0.96658 1.20995 1.01110 0.91058 1.11000 1.20359 0.91425 0.98525 0.95303 1.19470 0.94281 0.92446 1.10145 1.21454 0.90194 0.98427 1.13770 1.21405 0.98228 0.82751 1.00916 1.18059 0.88397 0.83261 0.90036 0.91429 1.86646 1.59959 1.33519 1.57357 1.21504 1.09193 1.36832 0.92133 0.94978 1.25856 0.98520 0.94046 0.98230 1.70059 1.26433 1.38773 1.21982 0.85978 0.78058 0.77184 0.82530 1.20741 1.22073 1.12512 1.41707 1.06129 1.06151 1.65192 0.74204 1.18044 0.84027 0.94752 1.02581 1.19042 0.92441 0.94864 1.14607 0.91486 0.91736 0.86303 0.82378 0.83483 0.83084 0.77626 0.92105 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.80 113.37 1.11 1.37 16 2 O -0.34 -8.01 10.49 -92.90 -0.97 -8.98 16 3 C 0.14 3.76 6.68 22.52 0.15 3.91 16 4 C -0.22 -5.46 8.96 22.13 0.20 -5.27 16 5 C -0.04 -1.07 10.05 22.22 0.22 -0.84 16 6 C -0.16 -5.65 6.37 -20.18 -0.13 -5.78 16 7 C -0.21 -8.29 10.37 23.52 0.24 -8.04 16 8 C 0.07 3.10 6.10 40.83 0.25 3.35 16 9 C 0.26 11.82 2.83 29.10 0.08 11.91 16 10 H 0.07 3.00 7.57 -2.39 -0.02 2.98 16 11 O -0.57 -24.05 10.00 -148.98 -1.49 -25.54 16 12 C -0.56 -30.83 9.33 25.60 0.24 -30.59 16 13 H 0.03 2.01 7.98 -2.91 -0.02 1.99 16 14 C 0.03 1.92 5.47 84.66 0.46 2.39 16 15 N -0.93 -56.87 13.96 21.45 0.30 -56.58 16 16 Si 0.94 43.14 26.99 68.60 1.85 44.99 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 19 H -0.20 -8.83 5.31 99.48 0.53 -8.30 16 20 N -0.59 -21.75 6.08 -175.88 -1.07 -22.82 16 21 H 0.42 13.53 8.96 -92.70 -0.83 12.70 16 22 C 0.11 4.09 7.27 39.02 0.28 4.37 16 23 C -0.19 -5.87 10.01 22.47 0.22 -5.65 16 24 H 0.07 0.76 7.64 -2.39 -0.02 0.74 16 25 H 0.06 0.77 7.64 -2.39 -0.02 0.75 16 26 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.16 2.68 6.24 -2.91 -0.02 2.67 16 28 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 29 H 0.15 5.27 7.48 -2.91 -0.02 5.25 16 30 H 0.37 13.98 8.08 -74.06 -0.60 13.38 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -69.32 274.45 1.52 -67.80 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.44 Total: 30.01 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 3.34 Total: -28.89 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -0.77 Total: -79.39 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -2.46 Total: -34.52 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.85 Total: 44.99 kcal Total: -69.32 1.52 -67.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535757468.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.133 kcal (2) G-P(sol) polarization free energy of solvation -69.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds