Wall clock time and date at job start Mon Mar 30 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35943 * 117.00298 * 2 1 4 4 C 1.39275 * 119.72701 * 359.97438 * 3 2 1 5 5 C 1.36568 * 120.47455 * 179.97438 * 4 3 2 6 6 C 1.39646 * 119.83576 * 359.97438 * 5 4 3 7 7 C 1.46565 * 133.93619 * 180.33955 * 6 5 4 8 8 C 1.34181 * 107.00750 * 180.09115 * 7 6 5 9 9 C 1.50707 * 125.04228 * 179.86171 * 8 7 6 10 10 H 1.08999 * 109.47345 * 204.69504 * 9 8 7 11 11 O 1.42903 * 109.46442 * 324.69434 * 9 8 7 12 12 C 1.50696 * 109.47163 * 84.69053 * 9 8 7 13 13 H 1.07991 * 120.00427 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99614 * 180.02562 * 12 9 8 15 15 N 1.31522 * 119.99827 * 180.02562 * 14 12 9 16 16 Si 1.86790 * 120.00424 * 0.02562 * 14 12 9 17 17 H 1.48503 * 109.47539 * 89.99825 * 16 14 12 18 18 H 1.48500 * 109.47547 * 209.99950 * 16 14 12 19 19 H 1.48509 * 109.47154 * 329.99776 * 16 14 12 20 20 N 1.36968 * 109.91986 * 359.59346 * 8 7 6 21 21 H 0.97001 * 125.06782 * 180.26972 * 20 8 7 22 22 C 1.37686 * 109.85645 * 0.26619 * 20 8 7 23 23 C 1.38204 * 119.72747 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47498 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47284 * 300.00611 * 1 2 3 26 26 H 1.09002 * 109.46969 * 59.99751 * 1 2 3 27 27 H 1.07994 * 119.76537 * 359.97438 * 4 3 2 28 28 H 1.07990 * 120.08172 * 180.02562 * 5 4 3 29 29 H 1.08000 * 126.49929 * 359.94792 * 7 6 5 30 30 H 0.96700 * 114.00311 * 60.00230 * 11 9 8 31 31 H 0.96999 * 120.00287 * 180.02562 * 15 14 12 32 32 H 1.08004 * 120.13079 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2822 2.3757 -0.0005 5 6 1.8863 3.6005 0.0000 6 6 3.2801 3.6877 0.0016 7 6 4.2291 4.8046 0.0088 8 6 5.4611 4.2728 0.0047 9 6 6.7445 5.0627 0.0065 10 1 7.5428 4.4600 -0.4266 11 8 6.5727 6.2522 -0.7665 12 6 7.1054 5.4315 1.4224 13 1 6.4693 5.1243 2.2393 14 6 8.2477 6.1611 1.6749 15 7 8.5629 6.4826 2.9107 16 14 9.3476 6.6931 0.2620 17 1 8.9076 8.0216 -0.2348 18 1 10.7526 6.7820 0.7347 19 1 9.2571 5.6988 -0.8373 20 7 5.3792 2.9056 0.0046 21 1 6.1384 2.3018 0.0057 22 6 4.0585 2.5161 0.0027 23 6 3.4267 1.2769 0.0005 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.2043 2.3097 -0.0014 28 1 1.2877 4.4993 0.0000 29 1 3.9835 5.8562 0.0139 30 1 5.8768 6.8378 -0.4379 31 1 9.3663 6.9962 3.0884 32 1 4.0127 0.3696 0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535757469.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:51 Heat of formation + Delta-G solvation = -30.310764 kcal Electronic energy + Delta-G solvation = -17149.935326 eV Core-core repulsion = 14269.389328 eV Total energy + Delta-G solvation = -2880.545998 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.90943 -39.15383 -36.45699 -35.10169 -32.42410 -31.47736 -29.31312 -29.04816 -27.33053 -26.33038 -23.32663 -21.67936 -21.01622 -19.59460 -18.12519 -17.63623 -16.47224 -15.96356 -15.66785 -15.39178 -15.00286 -14.20249 -13.87498 -13.77073 -13.39244 -13.14199 -13.03371 -12.62040 -12.13442 -12.01263 -11.81785 -11.46002 -11.19251 -10.88394 -10.54600 -10.46542 -10.07639 -9.48409 -9.13608 -8.79721 -8.78809 -7.73211 -7.00961 -6.25802 -4.40685 1.47593 1.90898 3.15219 3.31018 3.35385 3.40181 3.50663 3.82863 4.18606 4.36851 4.90942 5.02900 5.09395 5.10200 5.15661 5.37276 5.43329 5.51378 5.67374 5.74060 5.82529 6.05415 6.27795 6.32480 6.54727 6.64577 6.77713 6.94486 7.30405 7.35061 7.54200 7.65945 8.00877 8.16292 8.64407 8.83205 9.33596 10.83725 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.052723 B = 0.004876 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.954688 B = 5741.018060 C = 5825.715233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.322 6.322 3 C 0.129 3.871 4 C -0.230 4.230 5 C -0.038 4.038 6 C -0.128 4.128 7 C -0.213 4.213 8 C 0.106 3.894 9 C 0.247 3.753 10 H 0.070 0.930 11 O -0.574 6.574 12 C -0.559 4.559 13 H 0.079 0.921 14 C 0.086 3.914 15 N -0.884 5.884 16 Si 0.912 3.088 17 H -0.275 1.275 18 H -0.302 1.302 19 H -0.268 1.268 20 N -0.586 5.586 21 H 0.414 0.586 22 C 0.127 3.873 23 C -0.168 4.168 24 H 0.094 0.906 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.368 0.632 31 H 0.268 0.732 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.965 -8.587 -6.474 16.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C 0.083 3.917 4 C -0.250 4.250 5 C -0.056 4.056 6 C -0.133 4.133 7 C -0.237 4.237 8 C -0.002 4.002 9 C 0.189 3.811 10 H 0.088 0.912 11 O -0.380 6.380 12 C -0.596 4.596 13 H 0.097 0.903 14 C -0.120 4.120 15 N -0.520 5.520 16 Si 0.742 3.258 17 H -0.201 1.201 18 H -0.230 1.230 19 H -0.193 1.193 20 N -0.189 5.189 21 H 0.250 0.750 22 C 0.018 3.982 23 C -0.190 4.190 24 H 0.112 0.888 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.160 0.840 30 H 0.216 0.784 31 H 0.078 0.922 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.156 -8.976 -6.704 16.531 hybrid contribution 0.217 0.325 -0.099 0.403 sum -11.940 -8.651 -6.802 16.238 Atomic orbital electron populations 1.22966 0.78892 1.03292 1.01239 1.86006 1.20916 1.27266 1.89448 1.18299 0.91129 0.83778 0.98490 1.20611 0.99318 0.92130 1.12913 1.20010 0.92431 0.96798 0.96371 1.19206 0.92874 0.92969 1.08227 1.21176 0.89978 0.97469 1.15034 1.21720 0.98763 0.81742 0.97935 1.18590 0.87147 0.82665 0.92732 0.91217 1.86427 1.59675 1.33824 1.58035 1.21356 1.10173 1.37261 0.90855 0.90303 1.25015 0.97008 0.94031 0.95971 1.69938 1.25639 1.36997 1.19420 0.86269 0.77635 0.80273 0.81666 1.20061 1.23034 1.19325 1.41765 1.05422 1.06734 1.65022 0.74964 1.17764 0.84286 0.93905 1.02226 1.18847 0.91413 0.95142 1.13574 0.88752 0.92828 0.92892 0.85978 0.86024 0.84042 0.78398 0.92187 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.80 101.05 0.99 1.27 16 2 O -0.32 -4.32 10.49 -19.56 -0.21 -4.52 16 3 C 0.13 1.93 6.68 -39.21 -0.26 1.67 16 4 C -0.23 -3.21 8.96 -39.80 -0.36 -3.56 16 5 C -0.04 -0.57 10.05 -39.66 -0.40 -0.97 16 6 C -0.13 -2.33 6.37 -105.10 -0.67 -3.00 16 7 C -0.21 -4.13 10.37 -37.66 -0.39 -4.52 16 8 C 0.11 2.18 6.10 -81.72 -0.50 1.68 16 9 C 0.25 5.63 2.82 -29.03 -0.08 5.54 16 10 H 0.07 1.60 7.20 -51.93 -0.37 1.22 16 11 O -0.57 -12.57 10.89 -35.23 -0.38 -12.96 16 12 C -0.56 -15.01 9.33 -34.44 -0.32 -15.34 16 13 H 0.08 2.35 7.98 -52.49 -0.42 1.93 16 14 C 0.09 2.37 5.47 -17.82 -0.10 2.27 16 15 N -0.88 -26.03 13.96 55.43 0.77 -25.26 16 16 Si 0.91 22.12 26.18 -169.99 -4.45 17.67 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.30 -7.30 7.11 56.52 0.40 -6.89 16 19 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 20 N -0.59 -10.73 6.08 -6.94 -0.04 -10.77 16 21 H 0.41 6.52 8.96 -40.82 -0.37 6.15 16 22 C 0.13 2.28 7.27 -84.00 -0.61 1.67 16 23 C -0.17 -2.71 10.01 -39.27 -0.39 -3.10 16 24 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 26 H 0.05 0.41 7.64 -51.93 -0.40 0.02 16 27 H 0.12 1.33 6.24 -52.49 -0.33 1.00 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.14 2.49 7.49 -52.49 -0.39 2.10 16 30 H 0.37 7.04 8.09 45.56 0.37 7.41 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 275.40 15.07 4.15 4.15 Total: -1.00 -31.65 275.40 -5.99 -37.64 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -2.74 Total: 10.42 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -3.09 Total: -16.37 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.73 Total: -36.03 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.59 Total: -17.48 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.45 Total: 17.67 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.65 -5.99 -37.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535757469.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.328 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds