Wall clock time and date at job start Mon Mar 30 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35943 * 117.00298 * 2 1 4 4 C 1.39275 * 119.72701 * 359.97438 * 3 2 1 5 5 C 1.36568 * 120.47455 * 179.97438 * 4 3 2 6 6 C 1.39646 * 119.83576 * 359.97438 * 5 4 3 7 7 C 1.46565 * 133.93619 * 180.33955 * 6 5 4 8 8 C 1.34181 * 107.00750 * 180.09115 * 7 6 5 9 9 C 1.50707 * 125.04228 * 179.86171 * 8 7 6 10 10 H 1.08999 * 109.47345 * 204.69504 * 9 8 7 11 11 O 1.42903 * 109.46442 * 324.69434 * 9 8 7 12 12 C 1.50696 * 109.47163 * 84.69053 * 9 8 7 13 13 H 1.07991 * 120.00427 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99614 * 180.02562 * 12 9 8 15 15 N 1.31522 * 119.99827 * 180.02562 * 14 12 9 16 16 Si 1.86790 * 120.00424 * 0.02562 * 14 12 9 17 17 H 1.48503 * 109.47539 * 89.99825 * 16 14 12 18 18 H 1.48500 * 109.47547 * 209.99950 * 16 14 12 19 19 H 1.48509 * 109.47154 * 329.99776 * 16 14 12 20 20 N 1.36968 * 109.91986 * 359.59346 * 8 7 6 21 21 H 0.97001 * 125.06782 * 180.26972 * 20 8 7 22 22 C 1.37686 * 109.85645 * 0.26619 * 20 8 7 23 23 C 1.38204 * 119.72747 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47498 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47284 * 300.00611 * 1 2 3 26 26 H 1.09002 * 109.46969 * 59.99751 * 1 2 3 27 27 H 1.07994 * 119.76537 * 359.97438 * 4 3 2 28 28 H 1.07990 * 120.08172 * 180.02562 * 5 4 3 29 29 H 1.08000 * 126.49929 * 359.94792 * 7 6 5 30 30 H 0.96700 * 114.00311 * 60.00230 * 11 9 8 31 31 H 0.96999 * 120.00287 * 180.02562 * 15 14 12 32 32 H 1.08004 * 120.13079 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2822 2.3757 -0.0005 5 6 1.8863 3.6005 0.0000 6 6 3.2801 3.6877 0.0016 7 6 4.2291 4.8046 0.0088 8 6 5.4611 4.2728 0.0047 9 6 6.7445 5.0627 0.0065 10 1 7.5428 4.4600 -0.4266 11 8 6.5727 6.2522 -0.7665 12 6 7.1054 5.4315 1.4224 13 1 6.4693 5.1243 2.2393 14 6 8.2477 6.1611 1.6749 15 7 8.5629 6.4826 2.9107 16 14 9.3476 6.6931 0.2620 17 1 8.9076 8.0216 -0.2348 18 1 10.7526 6.7820 0.7347 19 1 9.2571 5.6988 -0.8373 20 7 5.3792 2.9056 0.0046 21 1 6.1384 2.3018 0.0057 22 6 4.0585 2.5161 0.0027 23 6 3.4267 1.2769 0.0005 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.2043 2.3097 -0.0014 28 1 1.2877 4.4993 0.0000 29 1 3.9835 5.8562 0.0139 30 1 5.8768 6.8378 -0.4379 31 1 9.3663 6.9962 3.0884 32 1 4.0127 0.3696 0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535757469.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:51 Heat of formation + Delta-G solvation = -53.638483 kcal Electronic energy + Delta-G solvation = -17150.946892 eV Core-core repulsion = 14269.389328 eV Total energy + Delta-G solvation = -2881.557564 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.23321 -40.25933 -38.07779 -36.42031 -34.52760 -32.75520 -30.83533 -30.36241 -28.66453 -27.51078 -25.00528 -23.06615 -22.26267 -21.08520 -19.62955 -19.24278 -17.99378 -17.17653 -16.95099 -16.57858 -16.46030 -15.83908 -15.39952 -15.22114 -14.94462 -14.56171 -14.30233 -14.08667 -13.74440 -13.23750 -13.10148 -12.89510 -12.74391 -12.58307 -11.88793 -11.64911 -11.61917 -11.44710 -10.91345 -10.80761 -10.29268 -9.01272 -8.42020 -8.34396 -6.58393 0.22422 0.68250 1.41948 1.44959 1.58166 1.83750 2.00258 2.34702 2.67295 2.93718 2.95408 3.77995 3.92462 3.94182 4.16604 4.22417 4.43461 4.47974 4.48563 4.59256 4.71131 4.77702 4.84909 5.01862 5.17577 5.30187 5.34363 5.53475 5.67223 5.96818 6.01506 6.17801 6.52910 6.54589 6.69989 7.01303 7.21350 8.73705 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.052723 B = 0.004876 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.954688 B = 5741.018060 C = 5825.715233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.136 3.864 4 C -0.222 4.222 5 C -0.037 4.037 6 C -0.159 4.159 7 C -0.213 4.213 8 C 0.074 3.926 9 C 0.259 3.741 10 H 0.069 0.931 11 O -0.574 6.574 12 C -0.557 4.557 13 H 0.036 0.964 14 C 0.036 3.964 15 N -0.931 5.931 16 Si 0.975 3.025 17 H -0.270 1.270 18 H -0.300 1.300 19 H -0.259 1.259 20 N -0.587 5.587 21 H 0.420 0.580 22 C 0.115 3.885 23 C -0.188 4.188 24 H 0.119 0.881 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.159 0.841 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.380 0.620 31 H 0.272 0.728 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.943 -9.294 -7.917 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.090 3.910 4 C -0.242 4.242 5 C -0.056 4.056 6 C -0.163 4.163 7 C -0.237 4.237 8 C -0.034 4.034 9 C 0.200 3.800 10 H 0.087 0.913 11 O -0.381 6.381 12 C -0.595 4.595 13 H 0.055 0.945 14 C -0.165 4.165 15 N -0.569 5.569 16 Si 0.802 3.198 17 H -0.195 1.195 18 H -0.228 1.228 19 H -0.184 1.184 20 N -0.192 5.192 21 H 0.258 0.742 22 C 0.006 3.994 23 C -0.210 4.210 24 H 0.137 0.863 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.176 0.824 28 H 0.165 0.835 29 H 0.170 0.830 30 H 0.230 0.770 31 H 0.081 0.919 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.160 -9.702 -8.154 19.003 hybrid contribution 0.580 0.411 0.394 0.812 sum -13.580 -9.291 -7.760 18.193 Atomic orbital electron populations 1.23355 0.76277 1.05497 1.02414 1.86011 1.23586 1.26404 1.88909 1.18491 0.90983 0.84934 0.96618 1.20997 1.01119 0.91054 1.10990 1.20361 0.91405 0.98536 0.95268 1.19465 0.94283 0.92413 1.10181 1.21457 0.90164 0.98463 1.13655 1.21355 0.98120 0.82799 1.01080 1.18199 0.88555 0.83135 0.90089 0.91297 1.86353 1.60403 1.33841 1.57513 1.21518 1.09267 1.36578 0.92121 0.94545 1.25809 0.98447 0.94150 0.98084 1.70054 1.26665 1.38647 1.21566 0.85280 0.75779 0.80033 0.78748 1.19538 1.22772 1.18382 1.41694 1.06156 1.06113 1.65196 0.74200 1.18040 0.83990 0.94768 1.02554 1.19041 0.92444 0.94860 1.14614 0.86301 0.91724 0.91488 0.82362 0.83461 0.83042 0.77032 0.91926 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.80 113.37 1.11 1.37 16 2 O -0.34 -7.99 10.49 -92.91 -0.97 -8.96 16 3 C 0.14 3.76 6.68 22.51 0.15 3.91 16 4 C -0.22 -5.44 8.96 22.13 0.20 -5.25 16 5 C -0.04 -1.05 10.05 22.22 0.22 -0.83 16 6 C -0.16 -5.65 6.37 -20.17 -0.13 -5.77 16 7 C -0.21 -8.25 10.37 23.52 0.24 -8.00 16 8 C 0.07 3.09 6.10 40.83 0.25 3.34 16 9 C 0.26 11.86 2.82 29.10 0.08 11.94 16 10 H 0.07 3.15 7.20 -2.39 -0.02 3.13 16 11 O -0.57 -24.65 10.89 -148.98 -1.62 -26.27 16 12 C -0.56 -30.74 9.33 25.60 0.24 -30.50 16 13 H 0.04 2.27 7.98 -2.92 -0.02 2.25 16 14 C 0.04 2.04 5.47 84.65 0.46 2.50 16 15 N -0.93 -56.27 13.96 21.45 0.30 -55.97 16 16 Si 0.98 45.64 26.18 68.60 1.80 47.43 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 19 H -0.26 -11.68 6.54 99.48 0.65 -11.03 16 20 N -0.59 -21.80 6.08 -175.88 -1.07 -22.87 16 21 H 0.42 13.59 8.96 -92.71 -0.83 12.76 16 22 C 0.11 4.10 7.27 39.02 0.28 4.39 16 23 C -0.19 -5.87 10.01 22.47 0.22 -5.64 16 24 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 0.76 7.65 -2.38 -0.02 0.75 16 26 H 0.07 0.75 7.64 -2.39 -0.02 0.73 16 27 H 0.16 2.67 6.24 -2.91 -0.02 2.65 16 28 H 0.15 3.29 8.06 -2.92 -0.02 3.26 16 29 H 0.15 5.28 7.49 -2.91 -0.02 5.26 16 30 H 0.38 14.26 8.09 -74.06 -0.60 13.66 16 31 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -68.71 275.40 1.45 -67.26 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -0.32 Total: 27.93 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 3.34 Total: -28.55 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -0.77 Total: -78.84 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -2.60 Total: -35.23 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.80 Total: 47.43 kcal Total: -68.71 1.45 -67.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535757469.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.619 kcal (2) G-P(sol) polarization free energy of solvation -68.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds