Wall clock time and date at job start Mon Mar 30 2020 06:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99669 * 2 1 4 4 H 1.48501 * 109.46798 * 239.99521 * 3 2 1 5 5 H 1.48499 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46820 * 119.99741 * 3 2 1 7 7 C 1.37870 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00187 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00135 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46736 * 299.99758 * 9 7 2 11 11 O 1.42891 * 109.46972 * 59.99968 * 9 7 2 12 12 C 1.50698 * 109.46921 * 180.02562 * 9 7 2 13 13 C 1.38284 * 119.92257 * 279.72413 * 12 9 7 14 14 C 1.38111 * 120.07434 * 179.73110 * 13 12 9 15 15 C 1.38908 * 119.92087 * 0.54154 * 14 13 12 16 16 N 1.39672 * 120.06989 * 179.70525 * 15 14 13 17 17 C 1.48539 * 110.99832 * 116.84381 * 16 15 14 18 18 C 1.54937 * 103.22559 * 159.71956 * 17 16 15 19 19 C 1.54592 * 102.92492 * 322.58471 * 18 17 16 20 20 C 1.47908 * 111.00056 * 234.23840 * 16 15 14 21 21 C 1.38906 * 119.85158 * 359.73316 * 15 14 13 22 22 C 1.38104 * 119.92981 * 359.97438 * 21 15 14 23 23 H 0.97003 * 120.00364 * 0.02562 * 1 2 3 24 24 H 0.96697 * 113.99912 * 60.00071 * 11 9 7 25 25 H 1.08007 * 119.96315 * 359.97438 * 13 12 9 26 26 H 1.07995 * 120.03447 * 180.27228 * 14 13 12 27 27 H 1.08993 * 110.66487 * 278.15366 * 17 16 15 28 28 H 1.09000 * 110.66510 * 41.28471 * 17 16 15 29 29 H 1.09008 * 110.72476 * 204.22803 * 18 17 16 30 30 H 1.08999 * 110.72726 * 80.94253 * 18 17 16 31 31 H 1.09001 * 110.31229 * 263.04343 * 19 18 17 32 32 H 1.09003 * 110.31411 * 140.87416 * 19 18 17 33 33 H 1.08998 * 109.91254 * 333.50852 * 20 16 15 34 34 H 1.08993 * 109.91541 * 94.60753 * 20 16 15 35 35 H 1.08005 * 120.03758 * 180.02562 * 21 15 14 36 36 H 1.07992 * 119.96374 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8904 11 8 0.4300 -2.5751 -1.1665 12 6 2.2304 -3.6445 0.0018 13 6 2.8334 -4.0378 -1.1788 14 6 3.7357 -5.0835 -1.1803 15 6 4.0285 -5.7476 0.0040 16 7 4.9358 -6.8095 0.0050 17 6 6.1249 -6.4929 0.8369 18 6 6.7198 -7.8886 1.1507 19 6 5.4613 -8.7653 1.3444 20 6 4.3344 -8.0200 0.6055 21 6 3.4166 -5.3537 1.1872 22 6 2.5200 -4.3033 1.1827 23 1 -0.4851 0.8400 -0.0004 24 1 0.9224 -2.5299 -1.9974 25 1 2.6016 -3.5240 -2.1002 26 1 4.2096 -5.3872 -2.1020 27 1 6.8373 -5.8885 0.2755 28 1 5.8281 -5.9859 1.7550 29 1 7.3132 -7.8585 2.0647 30 1 7.3169 -8.2506 0.3137 31 1 5.2231 -8.8565 2.4041 32 1 5.6152 -9.7506 0.9043 33 1 3.5529 -7.7358 1.3102 34 1 3.9164 -8.6539 -0.1765 35 1 3.6424 -5.8677 2.1098 36 1 2.0442 -3.9963 2.1023 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535781912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:51 Heat of formation + Delta-G solvation = -20.731382 kcal Electronic energy + Delta-G solvation = -17586.367948 eV Core-core repulsion = 14842.070437 eV Total energy + Delta-G solvation = -2744.297511 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93354 -37.81362 -35.33064 -32.26199 -32.17414 -30.40759 -28.93231 -28.79920 -26.09902 -23.38690 -22.06827 -21.49136 -20.95600 -19.74005 -17.18557 -16.91969 -16.02492 -15.45827 -14.74104 -14.58256 -14.13843 -14.02845 -13.56806 -13.16240 -12.93348 -12.74752 -12.51061 -12.08147 -11.81054 -11.56601 -11.46481 -11.24662 -11.06587 -10.93009 -10.86728 -10.67803 -10.58221 -10.19901 -9.25515 -8.67180 -8.45803 -8.39111 -8.33291 -7.72768 -6.05190 -4.24663 1.86882 1.98900 3.27421 3.32441 3.34976 4.02592 4.25137 4.41621 4.59626 4.73277 4.86409 5.20759 5.24235 5.36551 5.41082 5.48045 5.63974 5.65832 5.70883 5.83665 5.89982 5.90814 6.04573 6.07719 6.12010 6.22873 6.39589 6.57294 6.80100 6.94130 7.01301 7.10994 7.33178 7.71599 7.79105 7.82643 8.09086 8.77830 9.29434 9.51416 10.98107 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.040057 B = 0.004951 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.834700 B = 5653.658339 C = 5937.736402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.565 4.565 8 H 0.057 0.943 9 C 0.258 3.742 10 H 0.066 0.934 11 O -0.560 6.560 12 C -0.066 4.066 13 C -0.111 4.111 14 C -0.094 4.094 15 C 0.046 3.954 16 N -0.479 5.479 17 C 0.038 3.962 18 C -0.123 4.123 19 C -0.131 4.131 20 C 0.036 3.964 21 C -0.150 4.150 22 C -0.113 4.113 23 H 0.263 0.737 24 H 0.346 0.654 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.089 -13.709 1.699 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.602 4.602 8 H 0.076 0.924 9 C 0.200 3.800 10 H 0.084 0.916 11 O -0.363 6.363 12 C -0.066 4.066 13 C -0.130 4.130 14 C -0.113 4.113 15 C -0.048 4.048 16 N -0.200 5.200 17 C -0.089 4.089 18 C -0.161 4.161 19 C -0.169 4.169 20 C -0.091 4.091 21 C -0.170 4.170 22 C -0.132 4.132 23 H 0.072 0.928 24 H 0.190 0.810 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.127 0.873 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.578 -13.749 1.618 16.834 hybrid contribution 0.727 1.180 0.568 1.498 sum 10.305 -12.569 2.186 16.400 Atomic orbital electron populations 1.70065 1.05947 1.26768 1.46694 1.25047 0.94734 0.99154 0.93710 0.86672 0.79682 0.82862 0.78826 1.20026 1.21114 1.20100 1.21504 0.93191 0.90529 1.55007 0.92440 1.18514 0.86795 0.88077 0.86604 0.91606 1.86610 1.38051 1.96291 1.15354 1.21462 0.96769 0.95949 0.92447 1.20885 0.96797 0.96752 0.98543 1.20846 0.97958 0.95770 0.96759 1.18735 0.97334 0.95230 0.93459 1.62364 1.05728 1.02636 1.49265 1.23327 0.92593 0.96975 0.95974 1.22489 0.97200 0.94850 1.01607 1.22408 0.95039 0.99252 1.00214 1.22984 0.96503 0.91897 0.97733 1.21401 0.99395 0.98901 0.97309 1.20880 0.98478 0.95506 0.98305 0.92764 0.80951 0.86060 0.86310 0.89982 0.93245 0.91131 0.90768 0.91588 0.91070 0.93048 0.90388 0.87344 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.12 12.84 55.43 0.71 -24.41 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.56 -15.42 8.74 -34.44 -0.30 -15.72 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.26 6.56 3.06 -29.03 -0.09 6.47 16 10 H 0.07 1.82 8.00 -51.93 -0.42 1.40 16 11 O -0.56 -14.43 12.58 -35.23 -0.44 -14.87 16 12 C -0.07 -1.42 4.91 -104.59 -0.51 -1.93 16 13 C -0.11 -2.15 9.31 -39.61 -0.37 -2.52 16 14 C -0.09 -1.64 9.97 -39.38 -0.39 -2.03 16 15 C 0.05 0.77 4.86 -83.79 -0.41 0.36 16 16 N -0.48 -6.78 5.28 -167.16 -0.88 -7.66 16 17 C 0.04 0.46 6.43 -1.89 -0.01 0.45 16 18 C -0.12 -1.17 7.06 -24.87 -0.18 -1.34 16 19 C -0.13 -1.23 6.93 -25.37 -0.18 -1.41 16 20 C 0.04 0.43 6.49 -2.75 -0.02 0.41 16 21 C -0.15 -2.55 7.90 -39.38 -0.31 -2.86 16 22 C -0.11 -2.20 9.66 -39.61 -0.38 -2.58 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.35 7.82 7.48 45.56 0.34 8.16 16 25 H 0.12 2.21 6.77 -52.48 -0.36 1.86 16 26 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.63 7.03 -51.93 -0.36 0.27 16 29 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.65 6.30 -51.93 -0.33 0.33 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.11 1.62 7.04 -52.48 -0.37 1.25 16 36 H 0.12 2.18 8.03 -52.49 -0.42 1.76 16 LS Contribution 295.89 15.07 4.46 4.46 Total: -1.00 -30.19 295.89 -8.83 -39.02 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.41 Total: 7.99 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -3.24 Total: -20.59 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: -0.17 Total: -32.07 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.44 Total: -14.87 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.19 -8.83 -39.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535781912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.293 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds