Wall clock time and date at job start Mon Mar 30 2020 06:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99669 * 2 1 4 4 H 1.48501 * 109.46798 * 239.99521 * 3 2 1 5 5 H 1.48499 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46820 * 119.99741 * 3 2 1 7 7 C 1.37870 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00187 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00135 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46736 * 299.99758 * 9 7 2 11 11 O 1.42891 * 109.46972 * 59.99968 * 9 7 2 12 12 C 1.50698 * 109.46921 * 180.02562 * 9 7 2 13 13 C 1.38284 * 119.92257 * 279.72413 * 12 9 7 14 14 C 1.38111 * 120.07434 * 179.73110 * 13 12 9 15 15 C 1.38908 * 119.92087 * 0.54154 * 14 13 12 16 16 N 1.39672 * 120.06989 * 179.70525 * 15 14 13 17 17 C 1.48539 * 110.99832 * 116.84381 * 16 15 14 18 18 C 1.54937 * 103.22559 * 159.71956 * 17 16 15 19 19 C 1.54592 * 102.92492 * 322.58471 * 18 17 16 20 20 C 1.47908 * 111.00056 * 234.23840 * 16 15 14 21 21 C 1.38906 * 119.85158 * 359.73316 * 15 14 13 22 22 C 1.38104 * 119.92981 * 359.97438 * 21 15 14 23 23 H 0.97003 * 120.00364 * 0.02562 * 1 2 3 24 24 H 0.96697 * 113.99912 * 60.00071 * 11 9 7 25 25 H 1.08007 * 119.96315 * 359.97438 * 13 12 9 26 26 H 1.07995 * 120.03447 * 180.27228 * 14 13 12 27 27 H 1.08993 * 110.66487 * 278.15366 * 17 16 15 28 28 H 1.09000 * 110.66510 * 41.28471 * 17 16 15 29 29 H 1.09008 * 110.72476 * 204.22803 * 18 17 16 30 30 H 1.08999 * 110.72726 * 80.94253 * 18 17 16 31 31 H 1.09001 * 110.31229 * 263.04343 * 19 18 17 32 32 H 1.09003 * 110.31411 * 140.87416 * 19 18 17 33 33 H 1.08998 * 109.91254 * 333.50852 * 20 16 15 34 34 H 1.08993 * 109.91541 * 94.60753 * 20 16 15 35 35 H 1.08005 * 120.03758 * 180.02562 * 21 15 14 36 36 H 1.07992 * 119.96374 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8904 11 8 0.4300 -2.5751 -1.1665 12 6 2.2304 -3.6445 0.0018 13 6 2.8334 -4.0378 -1.1788 14 6 3.7357 -5.0835 -1.1803 15 6 4.0285 -5.7476 0.0040 16 7 4.9358 -6.8095 0.0050 17 6 6.1249 -6.4929 0.8369 18 6 6.7198 -7.8886 1.1507 19 6 5.4613 -8.7653 1.3444 20 6 4.3344 -8.0200 0.6055 21 6 3.4166 -5.3537 1.1872 22 6 2.5200 -4.3033 1.1827 23 1 -0.4851 0.8400 -0.0004 24 1 0.9224 -2.5299 -1.9974 25 1 2.6016 -3.5240 -2.1002 26 1 4.2096 -5.3872 -2.1020 27 1 6.8373 -5.8885 0.2755 28 1 5.8281 -5.9859 1.7550 29 1 7.3132 -7.8585 2.0647 30 1 7.3169 -8.2506 0.3137 31 1 5.2231 -8.8565 2.4041 32 1 5.6152 -9.7506 0.9043 33 1 3.5529 -7.7358 1.3102 34 1 3.9164 -8.6539 -0.1765 35 1 3.6424 -5.8677 2.1098 36 1 2.0442 -3.9963 2.1023 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535781912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:51 Heat of formation + Delta-G solvation = -40.606698 kcal Electronic energy + Delta-G solvation = -17587.229806 eV Core-core repulsion = 14842.070437 eV Total energy + Delta-G solvation = -2745.159369 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16743 -39.19582 -37.09889 -34.32016 -33.46836 -31.85035 -30.36467 -29.80365 -27.90494 -25.00286 -23.57273 -22.82700 -21.77307 -21.12355 -19.12282 -18.34460 -17.10249 -17.02300 -16.71194 -16.06182 -15.61834 -15.12487 -15.04386 -14.52665 -14.36899 -14.11168 -13.99852 -13.53394 -13.21775 -13.15106 -12.79826 -12.72781 -12.56832 -12.25270 -12.13375 -12.02546 -12.01044 -11.43157 -11.23414 -10.76570 -10.34200 -9.80847 -9.58090 -9.26397 -8.15697 -6.43623 0.41270 0.52780 1.39800 1.41204 1.49876 2.36864 2.84837 2.95933 3.09021 3.72651 3.91110 3.99128 4.06561 4.12645 4.17067 4.34877 4.36802 4.54391 4.58507 4.61424 4.75422 4.90503 4.91342 4.97997 5.04926 5.09902 5.15892 5.30262 5.35646 5.47808 5.54035 5.62115 5.83192 5.89522 5.97589 6.04907 6.48426 6.66108 7.27500 7.45789 8.87144 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.040057 B = 0.004951 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.834700 B = 5653.658339 C = 5937.736402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.029 3.971 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.261 3.739 10 H 0.030 0.970 11 O -0.576 6.576 12 C -0.095 4.095 13 C -0.115 4.115 14 C -0.096 4.096 15 C 0.060 3.940 16 N -0.487 5.487 17 C 0.031 3.969 18 C -0.115 4.115 19 C -0.125 4.125 20 C 0.030 3.970 21 C -0.144 4.144 22 C -0.124 4.124 23 H 0.264 0.736 24 H 0.358 0.642 25 H 0.125 0.875 26 H 0.140 0.860 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.443 -15.013 1.808 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.174 4.174 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.613 4.613 8 H 0.073 0.927 9 C 0.203 3.797 10 H 0.048 0.952 11 O -0.381 6.381 12 C -0.096 4.096 13 C -0.134 4.134 14 C -0.115 4.115 15 C -0.034 4.034 16 N -0.209 5.209 17 C -0.095 4.095 18 C -0.153 4.153 19 C -0.163 4.163 20 C -0.097 4.097 21 C -0.164 4.164 22 C -0.143 4.143 23 H 0.073 0.927 24 H 0.204 0.796 25 H 0.143 0.857 26 H 0.158 0.842 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.150 0.850 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.951 -15.070 1.725 19.311 hybrid contribution 0.032 1.456 0.532 1.550 sum 11.983 -13.614 2.257 18.276 Atomic orbital electron populations 1.70197 1.07618 1.27698 1.48032 1.25896 0.95506 1.02810 0.93186 0.85589 0.78390 0.78349 0.79146 1.19123 1.20644 1.19469 1.21791 0.93136 0.91780 1.54577 0.92732 1.18228 0.86750 0.89486 0.85191 0.95202 1.86532 1.38981 1.96445 1.16130 1.21104 0.97880 0.96255 0.94351 1.20945 0.97127 0.97467 0.97842 1.21057 0.97315 0.95013 0.98075 1.18964 0.96534 0.95058 0.92877 1.62439 1.05731 1.02311 1.50427 1.23435 0.91837 0.98886 0.95338 1.22486 0.97315 0.92713 1.02797 1.22409 0.93695 0.99546 1.00644 1.23093 0.97411 0.91262 0.97909 1.21569 0.98275 0.97867 0.98650 1.20950 0.99360 0.96396 0.97617 0.92716 0.79636 0.85677 0.84195 0.90124 0.93797 0.89223 0.90126 0.90472 0.89449 0.93808 0.90192 0.85024 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.87 12.84 21.45 0.28 -53.59 16 2 C 0.03 1.62 5.40 84.65 0.46 2.07 16 3 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.58 -32.17 8.74 25.60 0.22 -31.95 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.26 13.83 3.06 29.10 0.09 13.92 16 10 H 0.03 1.77 8.00 -2.38 -0.02 1.75 16 11 O -0.58 -30.78 12.58 -148.98 -1.87 -32.65 16 12 C -0.10 -4.21 4.91 -19.84 -0.10 -4.31 16 13 C -0.12 -4.45 9.31 22.25 0.21 -4.24 16 14 C -0.10 -3.19 9.97 22.40 0.22 -2.97 16 15 C 0.06 1.88 4.86 38.21 0.19 2.06 16 16 N -0.49 -12.56 5.28 -682.77 -3.60 -16.17 16 17 C 0.03 0.67 6.43 86.65 0.56 1.23 16 18 C -0.12 -1.75 7.06 31.80 0.22 -1.53 16 19 C -0.12 -1.89 6.93 31.47 0.22 -1.67 16 20 C 0.03 0.64 6.49 86.45 0.56 1.20 16 21 C -0.14 -4.71 7.90 22.40 0.18 -4.53 16 22 C -0.12 -4.90 9.66 22.25 0.21 -4.69 16 23 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 24 H 0.36 16.70 7.48 -74.06 -0.55 16.14 16 25 H 0.13 4.59 6.77 -2.91 -0.02 4.57 16 26 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.01 7.03 -2.39 -0.02 0.99 16 29 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 1.01 6.30 -2.39 -0.02 0.99 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.13 3.65 7.04 -2.91 -0.02 3.63 16 36 H 0.11 4.44 8.03 -2.91 -0.02 4.42 16 Total: -1.00 -65.35 295.89 0.59 -64.76 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.52 Total: 27.46 kcal Atomic # 6 Polarization: -38.64 SS G_CDS: 3.24 Total: -35.40 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -3.33 Total: -69.76 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -1.87 Total: -32.65 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.35 0.59 -64.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535781912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.157 kcal (2) G-P(sol) polarization free energy of solvation -65.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds