Wall clock time and date at job start Mon Mar 30 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47369 * 2 1 4 4 N 1.46895 * 109.46982 * 120.00264 * 2 1 3 5 5 C 1.46903 * 111.00143 * 327.70692 * 4 2 1 6 6 C 1.53003 * 109.47042 * 288.74261 * 5 4 2 7 7 C 1.50693 * 109.47224 * 186.87361 * 6 5 4 8 8 H 1.08000 * 120.00054 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00212 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99922 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00373 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46859 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47024 * 119.99792 * 11 9 7 14 14 H 1.48501 * 109.47275 * 240.00115 * 11 9 7 15 15 C 1.46900 * 111.00062 * 91.66140 * 4 2 1 16 16 C 1.50696 * 109.47527 * 71.86091 * 15 4 2 17 17 C 1.38235 * 119.99890 * 84.49266 * 16 15 4 18 18 C 1.38241 * 120.00105 * 179.97438 * 17 16 15 19 19 C 1.38236 * 119.99416 * 359.97438 * 18 17 16 20 20 C 1.38239 * 120.00433 * 0.27555 * 19 18 17 21 21 C 1.38230 * 119.99586 * 359.51312 * 20 19 18 22 22 H 1.08996 * 109.46787 * 305.46889 * 1 2 3 23 23 H 1.09007 * 109.46537 * 65.46247 * 1 2 3 24 24 H 1.08993 * 109.47458 * 185.46287 * 1 2 3 25 25 H 1.09000 * 109.47048 * 239.99976 * 2 1 3 26 26 H 1.09002 * 109.46983 * 185.31894 * 3 2 1 27 27 H 1.09001 * 109.47113 * 305.31615 * 3 2 1 28 28 H 1.09001 * 109.46883 * 65.32023 * 3 2 1 29 29 H 1.09000 * 109.46698 * 48.74021 * 5 4 2 30 30 H 1.08999 * 109.47279 * 168.73995 * 5 4 2 31 31 H 1.08998 * 109.46950 * 306.87800 * 6 5 4 32 32 H 1.09002 * 109.46693 * 66.87280 * 6 5 4 33 33 H 0.97002 * 120.00138 * 179.97438 * 10 9 7 34 34 H 1.08997 * 109.47489 * 311.85462 * 15 4 2 35 35 H 1.09006 * 109.47340 * 191.86046 * 15 4 2 36 36 H 1.07997 * 120.00580 * 359.97438 * 17 16 15 37 37 H 1.07993 * 120.00265 * 180.02562 * 18 17 16 38 38 H 1.08003 * 119.99498 * 180.02562 * 19 18 17 39 39 H 1.07997 * 119.99535 * 179.72632 * 20 19 18 40 40 H 1.08004 * 119.99859 * 180.27896 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.1021 -0.4994 2.3303 6 6 1.1950 0.9467 2.8212 7 6 0.3844 1.1022 4.0820 8 1 -0.1439 0.2543 4.4924 9 6 0.3171 2.3269 4.7117 10 7 0.9600 3.3596 4.2117 11 14 -0.6871 2.5196 6.2750 12 1 -1.3095 1.2180 6.6270 13 1 0.1995 2.9604 7.3817 14 1 -1.7503 3.5336 6.0586 15 6 2.2326 -2.1213 0.9323 16 6 3.4445 -2.2929 0.0532 17 6 4.7063 -2.3356 0.6163 18 6 5.8180 -2.4935 -0.1900 19 6 5.6678 -2.6092 -1.5593 20 6 4.4064 -2.5613 -2.1228 21 6 3.2945 -2.4078 -1.3161 22 1 -0.3633 0.5963 0.8369 23 1 -0.3633 0.4268 -0.9349 24 1 -0.3634 -1.0229 0.0978 25 1 1.8933 -0.5138 -0.8900 26 1 3.1259 1.4439 -0.0953 27 1 1.6011 1.9831 -0.8386 28 1 1.7566 1.9280 0.9338 29 1 0.0816 -0.7096 2.0100 30 1 1.3755 -1.1763 3.1397 31 1 2.2365 1.1947 3.0259 32 1 0.8060 1.6164 2.0542 33 1 0.9124 4.2213 4.6545 34 1 1.3573 -2.5312 0.4284 35 1 2.3893 -2.6476 1.8739 36 1 4.8236 -2.2456 1.6861 37 1 6.8037 -2.5274 0.2499 38 1 6.5363 -2.7331 -2.1892 39 1 4.2896 -2.6473 -3.1930 40 1 2.3086 -2.3748 -1.7560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019430419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:39 Heat of formation + Delta-G solvation = 25.658645 kcal Electronic energy + Delta-G solvation = -18118.220731 eV Core-core repulsion = 15511.767937 eV Total energy + Delta-G solvation = -2606.452794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.45520 -37.81755 -33.21396 -32.43432 -30.90406 -30.62351 -29.02185 -26.72041 -25.32058 -23.82953 -22.48249 -21.30998 -20.59991 -18.85962 -16.68066 -16.35866 -15.66546 -15.17057 -14.98577 -14.44415 -14.43804 -13.50709 -13.39759 -13.23349 -12.60168 -12.46336 -12.14508 -12.09580 -11.93961 -11.56333 -11.37326 -10.97395 -10.95511 -10.84503 -10.72975 -10.54285 -10.51739 -10.15082 -9.68283 -9.38647 -8.84095 -8.75717 -8.59129 -8.27461 -7.58981 -5.97171 -3.98811 1.47324 1.53030 3.32192 3.39920 3.43493 3.86925 4.45258 4.66164 4.95245 4.99432 5.09890 5.22052 5.38589 5.45779 5.46771 5.62337 5.64312 5.79568 5.81067 5.88721 6.09770 6.14452 6.17389 6.24619 6.38250 6.44466 6.47421 6.55565 6.57433 6.61348 6.78097 6.82210 6.98556 7.12493 7.13784 7.61058 7.73664 7.83794 7.97503 8.14277 8.48112 9.08853 9.64515 11.13933 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.034510 B = 0.004941 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.162821 B = 5665.748183 C = 5879.043970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.081 3.919 3 C -0.157 4.157 4 N -0.527 5.527 5 C 0.053 3.947 6 C 0.024 3.976 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.059 3.941 10 N -0.893 5.893 11 Si 0.889 3.111 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.088 3.912 16 C -0.064 4.064 17 C -0.096 4.096 18 C -0.123 4.123 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.117 4.117 22 H 0.081 0.919 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.094 0.906 29 H 0.032 0.968 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.030 0.970 33 H 0.259 0.741 34 H 0.035 0.965 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.357 -10.990 -11.398 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 C -0.214 4.214 4 N -0.250 5.250 5 C -0.073 4.073 6 C -0.013 4.013 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.142 4.142 10 N -0.532 5.532 11 Si 0.717 3.283 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.040 4.040 16 C -0.064 4.064 17 C -0.115 4.115 18 C -0.141 4.141 19 C -0.147 4.147 20 C -0.142 4.142 21 C -0.136 4.136 22 H 0.100 0.900 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.829 -10.602 -11.223 16.502 hybrid contribution -1.275 -0.128 0.608 1.419 sum 4.553 -10.730 -10.615 15.765 Atomic orbital electron populations 1.22492 0.97695 1.01304 1.02685 1.21614 0.92592 0.96097 0.92403 1.22179 1.00490 0.95162 1.03617 1.62350 1.48928 1.07959 1.05811 1.22543 0.92654 1.01873 0.90231 1.19326 0.97685 0.88921 0.95334 1.21276 1.29990 0.95269 1.09433 0.92901 1.24967 0.95753 0.96048 0.97455 1.69975 1.42620 1.00747 1.39864 0.86590 0.80059 0.78026 0.83623 1.19833 1.21049 1.21103 1.21076 0.93548 0.91161 0.98204 1.19894 0.95199 0.97664 0.93666 1.21064 0.91824 0.98394 1.00213 1.21135 0.98587 1.00534 0.93837 1.21068 0.97090 1.01404 0.95144 1.21048 0.92780 1.01032 0.99377 1.21053 0.98524 1.00663 0.93333 0.90048 0.93194 0.93684 0.91712 0.93223 0.93888 0.88764 0.94961 0.92549 0.95712 0.95165 0.93111 0.94636 0.90305 0.85879 0.86371 0.86615 0.86553 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 7.79 37.16 0.29 -2.74 16 2 C 0.08 1.39 2.64 -67.71 -0.18 1.21 16 3 C -0.16 -2.88 9.20 37.16 0.34 -2.54 16 4 N -0.53 -9.55 4.32 -228.08 -0.98 -10.54 16 5 C 0.05 1.11 4.41 -3.82 -0.02 1.09 16 6 C 0.02 0.62 3.61 -27.88 -0.10 0.52 16 7 C -0.52 -14.57 9.10 -34.44 -0.31 -14.88 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 11 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 15 C 0.09 1.34 5.06 -4.98 -0.03 1.31 16 16 C -0.06 -0.91 5.02 -104.63 -0.53 -1.43 16 17 C -0.10 -1.33 9.72 -39.58 -0.38 -1.71 16 18 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 19 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 20 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 21 C -0.12 -1.51 8.26 -39.59 -0.33 -1.84 16 22 H 0.08 1.57 5.43 -51.93 -0.28 1.29 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.69 7.41 -51.93 -0.39 0.31 16 25 H 0.06 1.01 5.42 -51.93 -0.28 0.73 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.09 2.06 4.40 -51.93 -0.23 1.83 16 29 H 0.03 0.66 5.49 -51.93 -0.28 0.37 16 30 H 0.06 1.17 7.74 -51.93 -0.40 0.77 16 31 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.03 0.80 4.42 -51.93 -0.23 0.57 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.04 0.51 7.63 -51.93 -0.40 0.11 16 35 H 0.08 1.17 7.72 -51.93 -0.40 0.77 16 36 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.36 7.59 -52.48 -0.40 0.96 16 LS Contribution 312.98 15.07 4.72 4.72 Total: -1.00 -29.56 312.98 -9.30 -38.85 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.21 Total: 1.28 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -2.53 Total: -25.01 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.25 Total: -36.41 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.56 -9.30 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019430419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.512 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds