Wall clock time and date at job start Mon Mar 30 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47402 * 2 1 4 4 C 1.52999 * 109.47421 * 120.00572 * 2 1 3 5 5 C 1.53001 * 109.47328 * 174.99762 * 4 2 1 6 6 N 1.46498 * 109.47108 * 179.97438 * 5 4 2 7 7 C 1.46500 * 120.00184 * 269.99848 * 6 5 4 8 8 C 1.50695 * 109.47360 * 270.00092 * 7 6 5 9 9 H 1.08006 * 119.99886 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00437 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00576 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99572 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47184 * 90.00028 * 12 10 8 14 14 H 1.48499 * 109.47029 * 209.99940 * 12 10 8 15 15 H 1.48497 * 109.47248 * 329.99732 * 12 10 8 16 16 C 1.39678 * 119.99677 * 90.00277 * 6 5 4 17 17 C 1.38915 * 120.06984 * 180.02562 * 16 6 5 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 6 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.46825 * 299.99435 * 1 2 3 23 23 H 1.08994 * 109.47352 * 59.99598 * 1 2 3 24 24 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46628 * 240.00278 * 2 1 3 26 26 H 1.09002 * 109.47093 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47196 * 300.00498 * 3 2 1 28 28 H 1.08999 * 109.46669 * 60.00469 * 3 2 1 29 29 H 1.08995 * 109.47254 * 54.99721 * 4 2 1 30 30 H 1.09000 * 109.47175 * 295.00005 * 4 2 1 31 31 H 1.08995 * 109.46987 * 59.99795 * 5 4 2 32 32 H 1.09000 * 109.47190 * 300.00233 * 5 4 2 33 33 H 1.08994 * 109.46748 * 30.00133 * 7 6 5 34 34 H 1.09004 * 109.46919 * 150.00058 * 7 6 5 35 35 H 0.96997 * 119.99836 * 180.02562 * 11 10 8 36 36 H 1.07998 * 120.03739 * 359.69591 * 17 16 6 37 37 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 38 38 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 39 39 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 40 40 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.8312 1.1878 6 7 4.0533 -1.5214 2.3842 7 6 4.4018 -0.7533 3.5820 8 6 5.8557 -0.3614 3.5221 9 1 6.4598 -0.6555 2.6765 10 6 6.4147 0.3725 4.5467 11 7 7.6834 0.7149 4.4942 12 14 5.3699 0.8805 6.0095 13 1 5.4402 -0.1700 7.0567 14 1 5.8786 2.1626 6.5597 15 1 3.9604 1.0529 5.5751 16 6 4.1867 -2.9117 2.3827 17 6 4.6491 -3.5678 3.5165 18 6 4.7794 -4.9427 3.5119 19 6 4.4495 -5.6662 2.3805 20 6 3.9888 -5.0163 1.2502 21 6 3.8562 -3.6416 1.2480 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8932 -0.5138 -0.8901 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.6054 -1.7199 1.2950 30 1 1.7517 -0.1585 2.1369 31 1 3.9995 0.1673 1.1419 32 1 3.8532 -1.3940 0.3000 33 1 3.7853 0.1443 3.6301 34 1 4.2260 -1.3628 4.4684 35 1 8.0767 1.2309 5.2153 36 1 4.9108 -3.0029 4.3990 37 1 5.1393 -5.4534 4.3929 38 1 4.5519 -6.7414 2.3797 39 1 3.7317 -5.5844 0.3684 40 1 3.4968 -3.1346 0.3647 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019804332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:05 Heat of formation + Delta-G solvation = 12.619598 kcal Electronic energy + Delta-G solvation = -18090.673340 eV Core-core repulsion = 15483.655131 eV Total energy + Delta-G solvation = -2607.018209 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.01987 -36.93302 -35.10229 -32.61782 -30.60587 -29.67101 -29.00200 -27.10191 -26.37573 -23.41417 -22.43502 -21.27799 -19.94405 -19.51675 -17.00497 -16.89409 -15.31754 -15.06974 -14.91710 -14.25103 -14.00609 -13.89840 -13.47988 -13.04601 -12.88919 -12.68222 -12.36421 -12.28339 -12.09150 -11.71799 -11.57854 -11.23156 -10.97054 -10.92242 -10.77358 -10.55025 -10.52165 -10.33683 -10.19482 -9.98090 -9.56741 -8.94404 -8.65620 -8.30383 -6.42623 -6.14288 -4.13979 2.06855 2.28998 3.21300 3.29109 3.30039 3.99216 4.32295 4.54749 4.96374 5.04074 5.06555 5.16598 5.41726 5.49562 5.56172 5.65695 5.71655 5.77846 5.81622 5.87230 5.92924 6.01559 6.06375 6.17465 6.19082 6.26681 6.31140 6.36231 6.52943 6.56640 6.60538 6.77171 6.79150 7.07163 7.10138 7.25152 7.53692 7.56363 8.07763 8.37355 8.52844 8.93737 9.45917 10.98801 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.009388 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.931367 B = 2981.924411 C = 4742.324310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.133 4.133 5 C 0.126 3.874 6 N -0.606 5.606 7 C 0.222 3.778 8 C -0.533 4.533 9 H 0.076 0.924 10 C 0.073 3.927 11 N -0.895 5.895 12 Si 0.871 3.129 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.265 1.265 16 C 0.239 3.761 17 C -0.189 4.189 18 C -0.076 4.076 19 C -0.203 4.203 20 C -0.078 4.078 21 C -0.217 4.217 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.265 0.735 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.920 -4.611 -6.672 14.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.172 4.172 5 C 0.002 3.998 6 N -0.311 5.311 7 C 0.101 3.899 8 C -0.572 4.572 9 H 0.094 0.906 10 C -0.130 4.130 11 N -0.533 5.533 12 Si 0.697 3.303 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.190 1.190 16 C 0.133 3.867 17 C -0.211 4.211 18 C -0.095 4.095 19 C -0.223 4.223 20 C -0.097 4.097 21 C -0.240 4.240 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.145 0.855 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.783 -4.252 -6.549 14.136 hybrid contribution -0.270 0.391 0.863 0.985 sum -12.054 -3.860 -5.686 13.875 Atomic orbital electron populations 1.21823 0.95588 1.01425 1.01388 1.21061 0.95365 0.96489 0.98388 1.21910 1.01761 0.95800 1.01324 1.22125 0.97041 1.00443 0.97619 1.21366 0.92494 0.98041 0.87924 1.46778 1.67776 1.02129 1.14395 1.19622 0.96424 0.90767 0.83112 1.21489 0.93765 1.34252 1.07688 0.90557 1.24891 0.94787 0.95404 0.97898 1.69901 1.11796 1.38396 1.33223 0.86934 0.81165 0.78645 0.83511 1.19940 1.20967 1.19014 1.17903 0.91579 0.83898 0.93277 1.20857 1.07006 0.94336 0.98927 1.20817 0.97634 0.93566 0.97509 1.20673 1.08207 0.98790 0.94679 1.20690 0.97980 0.93735 0.97318 1.20580 1.11372 0.94121 0.97891 0.92851 0.93030 0.92911 0.91385 0.91969 0.93178 0.92706 0.92007 0.91873 0.90341 0.91795 0.95515 0.95645 0.92533 0.85474 0.87073 0.87586 0.87349 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16 2 C -0.09 -1.11 2.92 -90.62 -0.26 -1.38 16 3 C -0.15 -1.79 8.95 37.16 0.33 -1.46 16 4 C -0.13 -1.92 5.01 -26.73 -0.13 -2.06 16 5 C 0.13 2.16 4.91 -4.04 -0.02 2.14 16 6 N -0.61 -12.49 2.59 -173.13 -0.45 -12.94 16 7 C 0.22 5.19 3.98 -5.20 -0.02 5.17 16 8 C -0.53 -14.77 9.94 -34.44 -0.34 -15.11 16 9 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 10 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 11 N -0.89 -26.98 13.96 55.43 0.77 -26.21 16 12 Si 0.87 20.75 27.47 -169.99 -4.67 16.08 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 16 C 0.24 4.80 6.55 -83.78 -0.55 4.25 16 17 C -0.19 -3.81 9.20 -39.38 -0.36 -4.18 16 18 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 19 C -0.20 -3.25 10.04 -39.54 -0.40 -3.64 16 20 C -0.08 -1.24 10.04 -39.61 -0.40 -1.64 16 21 C -0.22 -3.78 9.21 -39.38 -0.36 -4.15 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.80 6.57 -51.93 -0.34 0.45 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.42 6.49 -51.93 -0.34 1.08 16 32 H 0.06 1.03 6.20 -51.93 -0.32 0.70 16 33 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 34 H 0.03 0.60 5.63 -51.93 -0.29 0.31 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.13 2.74 6.15 -52.49 -0.32 2.42 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.79 6.14 -52.48 -0.32 1.47 16 LS Contribution 320.21 15.07 4.83 4.83 Total: -1.00 -29.51 320.21 -8.74 -38.25 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.55 Total: 3.00 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -2.67 Total: -23.00 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.33 Total: -39.14 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.51 -8.74 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019804332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.866 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds