Wall clock time and date at job start Mon Mar 30 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47402 * 2 1 4 4 C 1.52999 * 109.47421 * 120.00572 * 2 1 3 5 5 C 1.53001 * 109.47328 * 174.99762 * 4 2 1 6 6 N 1.46498 * 109.47108 * 179.97438 * 5 4 2 7 7 C 1.46500 * 120.00184 * 269.99848 * 6 5 4 8 8 C 1.50695 * 109.47360 * 270.00092 * 7 6 5 9 9 H 1.08006 * 119.99886 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00437 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00576 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99572 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47184 * 90.00028 * 12 10 8 14 14 H 1.48499 * 109.47029 * 209.99940 * 12 10 8 15 15 H 1.48497 * 109.47248 * 329.99732 * 12 10 8 16 16 C 1.39678 * 119.99677 * 90.00277 * 6 5 4 17 17 C 1.38915 * 120.06984 * 180.02562 * 16 6 5 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 6 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.46825 * 299.99435 * 1 2 3 23 23 H 1.08994 * 109.47352 * 59.99598 * 1 2 3 24 24 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46628 * 240.00278 * 2 1 3 26 26 H 1.09002 * 109.47093 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47196 * 300.00498 * 3 2 1 28 28 H 1.08999 * 109.46669 * 60.00469 * 3 2 1 29 29 H 1.08995 * 109.47254 * 54.99721 * 4 2 1 30 30 H 1.09000 * 109.47175 * 295.00005 * 4 2 1 31 31 H 1.08995 * 109.46987 * 59.99795 * 5 4 2 32 32 H 1.09000 * 109.47190 * 300.00233 * 5 4 2 33 33 H 1.08994 * 109.46748 * 30.00133 * 7 6 5 34 34 H 1.09004 * 109.46919 * 150.00058 * 7 6 5 35 35 H 0.96997 * 119.99836 * 180.02562 * 11 10 8 36 36 H 1.07998 * 120.03739 * 359.69591 * 17 16 6 37 37 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 38 38 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 39 39 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 40 40 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.8312 1.1878 6 7 4.0533 -1.5214 2.3842 7 6 4.4018 -0.7533 3.5820 8 6 5.8557 -0.3614 3.5221 9 1 6.4598 -0.6555 2.6765 10 6 6.4147 0.3725 4.5467 11 7 7.6834 0.7149 4.4942 12 14 5.3699 0.8805 6.0095 13 1 5.4402 -0.1700 7.0567 14 1 5.8786 2.1626 6.5597 15 1 3.9604 1.0529 5.5751 16 6 4.1867 -2.9117 2.3827 17 6 4.6491 -3.5678 3.5165 18 6 4.7794 -4.9427 3.5119 19 6 4.4495 -5.6662 2.3805 20 6 3.9888 -5.0163 1.2502 21 6 3.8562 -3.6416 1.2480 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8932 -0.5138 -0.8901 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.6054 -1.7199 1.2950 30 1 1.7517 -0.1585 2.1369 31 1 3.9995 0.1673 1.1419 32 1 3.8532 -1.3940 0.3000 33 1 3.7853 0.1443 3.6301 34 1 4.2260 -1.3628 4.4684 35 1 8.0767 1.2309 5.2153 36 1 4.9108 -3.0029 4.3990 37 1 5.1393 -5.4534 4.3929 38 1 4.5519 -6.7414 2.3797 39 1 3.7317 -5.5844 0.3684 40 1 3.4968 -3.1346 0.3647 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019804332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:05 Heat of formation + Delta-G solvation = -2.280517 kcal Electronic energy + Delta-G solvation = -18091.319458 eV Core-core repulsion = 15483.655131 eV Total energy + Delta-G solvation = -2607.664327 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44183 -38.13381 -36.48569 -34.67763 -32.05117 -31.04003 -30.62100 -28.04151 -27.91345 -24.95390 -23.98809 -22.71632 -21.19706 -20.78644 -19.05044 -18.44821 -16.87318 -16.44532 -16.22629 -15.87147 -15.32040 -15.13274 -14.76654 -14.67005 -14.27675 -14.23946 -13.86683 -13.47964 -13.33269 -13.13057 -12.98439 -12.69955 -12.43204 -12.26694 -12.13898 -12.03731 -11.82871 -11.72422 -11.53502 -11.47149 -11.28636 -10.83458 -10.47997 -9.67960 -8.34743 -7.94634 -6.39601 0.68804 0.90861 1.31999 1.32463 1.43151 2.28580 2.49019 2.99098 3.16248 3.90112 3.98747 4.08226 4.15838 4.23943 4.30996 4.46483 4.56350 4.68621 4.71748 4.76205 4.78155 4.82229 4.84879 4.92545 4.96621 5.04096 5.07734 5.14646 5.19870 5.31211 5.34936 5.45633 5.49390 5.53155 5.60830 5.75312 5.87377 6.09761 6.24051 6.60082 6.70472 6.89298 7.25979 8.82755 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.009388 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.931367 B = 2981.924411 C = 4742.324310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.120 4.120 5 C 0.125 3.875 6 N -0.620 5.620 7 C 0.236 3.764 8 C -0.535 4.535 9 H 0.025 0.975 10 C 0.014 3.986 11 N -0.945 5.945 12 Si 0.943 3.057 13 H -0.265 1.265 14 H -0.279 1.279 15 H -0.245 1.245 16 C 0.211 3.789 17 C -0.223 4.223 18 C -0.082 4.082 19 C -0.196 4.196 20 C -0.074 4.074 21 C -0.218 4.218 22 H 0.049 0.951 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.026 0.974 35 H 0.268 0.732 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.292 -6.000 -7.370 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.159 4.159 5 C 0.002 3.998 6 N -0.327 5.327 7 C 0.113 3.887 8 C -0.574 4.574 9 H 0.043 0.957 10 C -0.184 4.184 11 N -0.585 5.585 12 Si 0.766 3.234 13 H -0.190 1.190 14 H -0.204 1.204 15 H -0.169 1.169 16 C 0.107 3.893 17 C -0.245 4.245 18 C -0.100 4.100 19 C -0.217 4.217 20 C -0.092 4.092 21 C -0.241 4.241 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.176 -5.670 -7.277 16.913 hybrid contribution 0.556 0.690 0.971 1.315 sum -13.620 -4.980 -6.305 15.813 Atomic orbital electron populations 1.21787 0.94029 1.02005 1.02021 1.21050 0.96573 0.95981 0.97268 1.21908 1.00727 0.96199 1.01970 1.21990 0.94715 1.00686 0.98484 1.21486 0.94293 0.96863 0.87125 1.46743 1.68900 1.02616 1.14396 1.19260 0.93417 0.91194 0.84850 1.21666 0.95699 1.33974 1.06019 0.95671 1.25832 0.96039 0.95302 1.01263 1.70062 1.14022 1.39768 1.34668 0.85783 0.80106 0.78355 0.79196 1.19031 1.20424 1.16855 1.18216 0.92957 0.83730 0.94418 1.20876 1.09331 0.95774 0.98567 1.21100 0.97240 0.92546 0.99137 1.21112 1.06275 1.00496 0.93769 1.21167 0.96302 0.93167 0.98594 1.20843 1.10818 0.95047 0.97361 0.93202 0.91448 0.92370 0.90352 0.93593 0.91279 0.93321 0.91805 0.93242 0.92197 0.90756 0.95086 0.95566 0.92320 0.88196 0.85206 0.84161 0.83527 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.19 71.98 0.66 -1.92 16 2 C -0.09 -1.97 2.92 -10.79 -0.03 -2.00 16 3 C -0.15 -3.44 8.95 71.98 0.64 -2.80 16 4 C -0.12 -3.36 5.01 30.59 0.15 -3.21 16 5 C 0.13 4.35 4.91 86.38 0.42 4.77 16 6 N -0.62 -26.21 2.59 -701.65 -1.82 -28.02 16 7 C 0.24 11.35 3.98 85.63 0.34 11.69 16 8 C -0.53 -31.13 9.94 25.60 0.25 -30.87 16 9 H 0.02 1.67 8.06 -2.91 -0.02 1.65 16 10 C 0.01 0.80 5.47 84.65 0.46 1.26 16 11 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 12 Si 0.94 43.51 27.47 68.60 1.88 45.39 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 16 C 0.21 8.52 6.55 38.21 0.25 8.77 16 17 C -0.22 -9.18 9.20 22.40 0.21 -8.97 16 18 C -0.08 -2.75 10.04 22.25 0.22 -2.53 16 19 C -0.20 -5.64 10.04 22.29 0.22 -5.42 16 20 C -0.07 -2.09 10.04 22.25 0.22 -1.86 16 21 C -0.22 -7.24 9.21 22.40 0.21 -7.04 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.04 1.18 6.57 -2.39 -0.02 1.17 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 2.26 6.49 -2.39 -0.02 2.25 16 32 H 0.07 2.37 6.20 -2.39 -0.01 2.35 16 33 H 0.03 1.46 7.13 -2.39 -0.02 1.44 16 34 H 0.03 1.27 5.63 -2.39 -0.01 1.25 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.10 4.55 6.15 -2.91 -0.02 4.53 16 37 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.13 3.79 6.14 -2.91 -0.02 3.77 16 Total: -1.00 -66.87 320.21 5.54 -61.32 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.93 Total: 20.45 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 4.24 Total: -40.13 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -1.52 Total: -87.03 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Total: -66.87 5.54 -61.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019804332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.043 kcal (2) G-P(sol) polarization free energy of solvation -66.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds