Wall clock time and date at job start Mon Mar 30 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46958 * 2 1 4 4 C 1.52999 * 109.47328 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47328 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47108 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00184 * 269.99848 * 6 5 4 8 8 C 1.50695 * 109.47360 * 270.00092 * 7 6 5 9 9 H 1.08006 * 119.99886 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00437 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99649 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00424 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47087 * 59.99986 * 12 10 8 14 14 H 1.48501 * 109.47059 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47145 * 300.00293 * 12 10 8 16 16 C 1.39678 * 119.99677 * 90.00277 * 6 5 4 17 17 C 1.38915 * 120.06984 * 180.02562 * 16 6 5 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 6 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 1.09003 * 109.46952 * 299.99453 * 1 2 3 23 23 H 1.08992 * 109.47276 * 60.00152 * 1 2 3 24 24 H 1.09001 * 109.46859 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46952 * 240.00546 * 2 1 3 26 26 H 1.08995 * 109.47774 * 119.99849 * 2 1 3 27 27 H 1.08999 * 109.47425 * 60.00030 * 3 2 1 28 28 H 1.09005 * 109.47279 * 299.99902 * 3 2 1 29 29 H 1.08995 * 109.47254 * 59.99959 * 4 3 2 30 30 H 1.09000 * 109.47175 * 300.00242 * 4 3 2 31 31 H 1.08995 * 109.46987 * 59.99795 * 5 4 3 32 32 H 1.09000 * 109.47190 * 300.00233 * 5 4 3 33 33 H 1.08994 * 109.46748 * 30.00133 * 7 6 5 34 34 H 1.09004 * 109.46919 * 150.00058 * 7 6 5 35 35 H 0.97006 * 120.00477 * 180.02562 * 11 10 8 36 36 H 1.07998 * 120.03739 * 359.69591 * 17 16 6 37 37 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 38 38 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 39 39 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 40 40 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 7 5.5449 2.8852 -0.0013 7 6 6.2774 2.8858 1.2674 8 6 6.5286 4.3068 1.7018 9 1 6.1780 5.1274 1.0934 10 6 7.2059 4.5593 2.8759 11 7 7.6333 3.5600 3.6164 12 14 7.5166 6.3207 3.4147 13 1 6.2188 7.0204 3.5916 14 1 8.2582 6.3213 4.7013 15 1 8.3192 7.0207 2.3798 16 6 6.2432 2.8847 -1.2110 17 6 7.6324 2.8842 -1.2127 18 6 8.3198 2.8832 -2.4106 19 6 7.6267 2.8822 -3.6072 20 6 6.2438 2.8827 -3.6091 21 6 5.5503 2.8837 -2.4149 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.9329 0.9290 -0.8908 30 1 3.9337 0.9286 0.8891 31 1 3.7169 3.3992 0.8886 32 1 3.7162 3.3987 -0.8912 33 1 5.6884 2.3723 2.0272 34 1 7.2299 2.3719 1.1372 35 1 8.1095 3.7376 4.4426 36 1 8.1742 2.8892 -0.2785 37 1 9.3998 2.8833 -2.4127 38 1 8.1667 2.8810 -4.5426 39 1 5.7057 2.8815 -4.5454 40 1 4.4702 2.8845 -2.4170 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019804338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:08 Heat of formation + Delta-G solvation = 4.136481 kcal Electronic energy + Delta-G solvation = -17741.807502 eV Core-core repulsion = 15134.421437 eV Total energy + Delta-G solvation = -2607.386065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.88970 -36.45835 -34.96270 -32.76759 -31.15031 -30.14425 -28.89039 -27.09854 -25.02199 -23.00136 -22.06660 -21.17993 -20.83414 -19.56255 -16.96041 -16.39679 -15.53821 -15.08734 -14.88404 -14.20935 -13.99650 -13.81886 -13.50693 -13.19622 -12.76082 -12.71864 -12.58784 -12.06140 -11.66484 -11.63294 -11.26006 -11.05269 -10.96552 -10.80999 -10.71615 -10.67273 -10.61183 -10.27026 -10.23967 -9.87078 -9.68495 -8.87096 -8.49201 -8.24543 -6.46596 -6.00700 -4.16107 2.12879 2.35385 3.28559 3.32918 3.36347 4.10181 4.41067 4.61474 4.96317 5.00108 5.17566 5.22752 5.36751 5.51788 5.58251 5.60896 5.71695 5.76727 5.82196 5.84480 6.07180 6.07679 6.10880 6.12099 6.17374 6.31737 6.35789 6.43644 6.54157 6.66780 6.68604 7.00826 7.11775 7.21295 7.29128 7.38921 7.64607 7.82277 8.17662 8.31070 8.53252 8.92990 9.50663 10.96772 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.007372 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.413305 B = 3797.156883 C = 5539.179566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.138 4.138 5 C 0.127 3.873 6 N -0.610 5.610 7 C 0.251 3.749 8 C -0.531 4.531 9 H 0.058 0.942 10 C 0.062 3.938 11 N -0.896 5.896 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.239 3.761 17 C -0.188 4.188 18 C -0.077 4.077 19 C -0.206 4.206 20 C -0.079 4.079 21 C -0.220 4.220 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.030 0.970 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.048 -4.630 -9.048 12.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.177 4.177 5 C 0.002 3.998 6 N -0.315 5.315 7 C 0.131 3.869 8 C -0.570 4.570 9 H 0.077 0.923 10 C -0.140 4.140 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.201 1.201 16 C 0.133 3.867 17 C -0.211 4.211 18 C -0.096 4.096 19 C -0.227 4.227 20 C -0.098 4.098 21 C -0.243 4.243 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.056 -4.666 -8.632 12.696 hybrid contribution 0.237 1.015 0.447 1.134 sum -7.819 -3.652 -8.185 11.894 Atomic orbital electron populations 1.21779 0.96251 1.01215 1.01667 1.21525 0.95399 0.97309 1.01954 1.21547 0.95631 0.96432 1.01844 1.22065 0.94553 0.98633 1.02408 1.21273 0.81298 0.95287 1.01894 1.47154 1.03920 1.76001 1.04433 1.19245 0.91975 0.96828 0.78857 1.21553 1.36389 0.92701 1.06351 0.92350 1.24951 0.95433 0.97328 0.96298 1.69922 1.38375 1.30801 1.14357 0.86592 0.78426 0.84803 0.77846 1.20266 1.21203 1.20119 1.17943 0.91446 0.91257 0.86088 1.20915 0.92771 1.08546 0.98828 1.20819 0.98830 0.97764 0.92232 1.20649 0.94171 1.10670 0.97172 1.20671 0.94136 0.98427 0.96572 1.20578 0.98988 1.13271 0.91499 0.92813 0.92921 0.93107 0.92236 0.92074 0.91958 0.92275 0.92138 0.91745 0.90820 0.92068 0.95246 0.94766 0.92624 0.85143 0.87180 0.87728 0.87504 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.37 5.93 -26.73 -0.16 -1.53 16 3 C -0.12 -1.43 5.21 -26.73 -0.14 -1.57 16 4 C -0.14 -2.08 5.54 -26.73 -0.15 -2.23 16 5 C 0.13 2.24 5.16 -4.04 -0.02 2.22 16 6 N -0.61 -12.95 2.59 -173.13 -0.45 -13.40 16 7 C 0.25 6.27 4.91 -5.20 -0.03 6.24 16 8 C -0.53 -14.50 9.39 -34.44 -0.32 -14.82 16 9 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 11 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 12 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 C 0.24 4.91 6.55 -83.78 -0.55 4.36 16 17 C -0.19 -3.90 9.20 -39.38 -0.36 -4.26 16 18 C -0.08 -1.38 10.04 -39.61 -0.40 -1.78 16 19 C -0.21 -3.37 10.04 -39.54 -0.40 -3.77 16 20 C -0.08 -1.29 10.04 -39.61 -0.40 -1.68 16 21 C -0.22 -3.93 9.21 -39.38 -0.36 -4.29 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.06 0.99 6.20 -51.93 -0.32 0.67 16 33 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.03 0.91 6.20 -51.93 -0.32 0.59 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 36 H 0.13 2.96 6.15 -52.49 -0.32 2.64 16 37 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.10 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.81 6.14 -52.48 -0.32 1.49 16 LS Contribution 327.74 15.07 4.94 4.94 Total: -1.00 -28.27 327.74 -9.55 -37.82 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.75 Total: 1.82 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -3.01 Total: -22.56 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.29 Total: -38.36 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.27 -9.55 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019804338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.956 kcal (2) G-P(sol) polarization free energy of solvation -28.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds