Wall clock time and date at job start Mon Mar 30 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46958 * 2 1 4 4 C 1.52999 * 109.47328 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47328 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47108 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00184 * 269.99848 * 6 5 4 8 8 C 1.50695 * 109.47360 * 270.00092 * 7 6 5 9 9 H 1.08006 * 119.99886 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00437 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99649 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00424 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47087 * 59.99986 * 12 10 8 14 14 H 1.48501 * 109.47059 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47145 * 300.00293 * 12 10 8 16 16 C 1.39678 * 119.99677 * 90.00277 * 6 5 4 17 17 C 1.38915 * 120.06984 * 180.02562 * 16 6 5 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 6 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 1.09003 * 109.46952 * 299.99453 * 1 2 3 23 23 H 1.08992 * 109.47276 * 60.00152 * 1 2 3 24 24 H 1.09001 * 109.46859 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46952 * 240.00546 * 2 1 3 26 26 H 1.08995 * 109.47774 * 119.99849 * 2 1 3 27 27 H 1.08999 * 109.47425 * 60.00030 * 3 2 1 28 28 H 1.09005 * 109.47279 * 299.99902 * 3 2 1 29 29 H 1.08995 * 109.47254 * 59.99959 * 4 3 2 30 30 H 1.09000 * 109.47175 * 300.00242 * 4 3 2 31 31 H 1.08995 * 109.46987 * 59.99795 * 5 4 3 32 32 H 1.09000 * 109.47190 * 300.00233 * 5 4 3 33 33 H 1.08994 * 109.46748 * 30.00133 * 7 6 5 34 34 H 1.09004 * 109.46919 * 150.00058 * 7 6 5 35 35 H 0.97006 * 120.00477 * 180.02562 * 11 10 8 36 36 H 1.07998 * 120.03739 * 359.69591 * 17 16 6 37 37 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 38 38 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 39 39 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 40 40 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 7 5.5449 2.8852 -0.0013 7 6 6.2774 2.8858 1.2674 8 6 6.5286 4.3068 1.7018 9 1 6.1780 5.1274 1.0934 10 6 7.2059 4.5593 2.8759 11 7 7.6333 3.5600 3.6164 12 14 7.5166 6.3207 3.4147 13 1 6.2188 7.0204 3.5916 14 1 8.2582 6.3213 4.7013 15 1 8.3192 7.0207 2.3798 16 6 6.2432 2.8847 -1.2110 17 6 7.6324 2.8842 -1.2127 18 6 8.3198 2.8832 -2.4106 19 6 7.6267 2.8822 -3.6072 20 6 6.2438 2.8827 -3.6091 21 6 5.5503 2.8837 -2.4149 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.9329 0.9290 -0.8908 30 1 3.9337 0.9286 0.8891 31 1 3.7169 3.3992 0.8886 32 1 3.7162 3.3987 -0.8912 33 1 5.6884 2.3723 2.0272 34 1 7.2299 2.3719 1.1372 35 1 8.1095 3.7376 4.4426 36 1 8.1742 2.8892 -0.2785 37 1 9.3998 2.8833 -2.4127 38 1 8.1667 2.8810 -4.5426 39 1 5.7057 2.8815 -4.5454 40 1 4.4702 2.8845 -2.4170 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019804338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:07 Heat of formation + Delta-G solvation = -8.461375 kcal Electronic energy + Delta-G solvation = -17742.353786 eV Core-core repulsion = 15134.421437 eV Total energy + Delta-G solvation = -2607.932349 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.36876 -37.78058 -36.26205 -34.74434 -32.44070 -31.52057 -30.52154 -28.67279 -26.48605 -24.74558 -23.34572 -22.58610 -21.86172 -21.07264 -18.63092 -18.36333 -16.90301 -16.54719 -16.34895 -15.91110 -15.25201 -15.20242 -14.71355 -14.48590 -14.23635 -14.09494 -14.03304 -13.59806 -13.16738 -13.02556 -12.74872 -12.64308 -12.53736 -12.32728 -12.08798 -11.93886 -11.88979 -11.76977 -11.59882 -11.40576 -11.28688 -10.64028 -10.47499 -9.66207 -8.36997 -7.81932 -6.37552 0.70721 0.93276 1.36556 1.38457 1.46786 2.33531 2.59582 3.06126 3.18513 3.93287 3.95217 4.14570 4.23375 4.26423 4.30739 4.48137 4.56408 4.63877 4.65670 4.77428 4.79332 4.89308 4.94752 4.96544 5.07956 5.09833 5.14094 5.18389 5.24592 5.34673 5.36717 5.45112 5.52140 5.60624 5.71018 5.77791 5.89666 6.07868 6.24354 6.52152 6.83848 6.96781 7.34504 8.83196 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.007372 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.413305 B = 3797.156883 C = 5539.179566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.110 4.110 4 C -0.125 4.125 5 C 0.126 3.874 6 N -0.623 5.623 7 C 0.270 3.730 8 C -0.542 4.542 9 H 0.049 0.951 10 C 0.013 3.987 11 N -0.927 5.927 12 Si 0.961 3.039 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.273 1.273 16 C 0.211 3.789 17 C -0.222 4.222 18 C -0.082 4.082 19 C -0.197 4.197 20 C -0.073 4.073 21 C -0.218 4.218 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.006 0.994 34 H 0.008 0.992 35 H 0.267 0.733 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.157 -3.951 -11.544 15.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.148 4.148 4 C -0.164 4.164 5 C 0.003 3.997 6 N -0.329 5.329 7 C 0.149 3.851 8 C -0.581 4.581 9 H 0.067 0.933 10 C -0.186 4.186 11 N -0.567 5.567 12 Si 0.786 3.214 13 H -0.194 1.194 14 H -0.204 1.204 15 H -0.198 1.198 16 C 0.106 3.894 17 C -0.244 4.244 18 C -0.100 4.100 19 C -0.217 4.217 20 C -0.091 4.091 21 C -0.241 4.241 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.024 0.976 34 H 0.026 0.974 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.146 0.854 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.178 -3.993 -11.162 14.992 hybrid contribution 0.630 0.766 1.105 1.485 sum -8.548 -3.227 -10.057 13.588 Atomic orbital electron populations 1.21752 0.94725 1.02041 1.02093 1.21512 0.96708 0.96184 1.01733 1.21509 0.93106 0.97641 1.02512 1.21927 0.96676 0.96570 1.01213 1.21418 0.79387 0.96916 1.01961 1.47004 1.05069 1.77423 1.03451 1.18696 0.90815 0.95246 0.80369 1.21758 1.36460 0.93351 1.06497 0.93317 1.25776 0.95055 1.01484 0.96292 1.70035 1.38985 1.32906 1.14769 0.85562 0.78565 0.79733 0.77545 1.19372 1.20355 1.19844 1.18242 0.91584 0.92832 0.86695 1.20841 0.93365 1.11562 0.98679 1.21079 0.99948 0.97127 0.91891 1.21092 0.94635 1.08311 0.97686 1.21164 0.94347 0.96205 0.97424 1.20835 0.99999 1.12363 0.90896 0.92834 0.92051 0.92134 0.91863 0.92991 0.92206 0.90637 0.92079 0.94136 0.92487 0.90060 0.97577 0.97426 0.92404 0.88835 0.85429 0.84147 0.83435 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 71.98 0.71 -1.80 16 2 C -0.12 -2.57 5.93 30.59 0.18 -2.39 16 3 C -0.11 -2.57 5.21 30.59 0.16 -2.41 16 4 C -0.12 -3.81 5.54 30.59 0.17 -3.64 16 5 C 0.13 4.53 5.16 86.38 0.45 4.97 16 6 N -0.62 -27.57 2.59 -701.65 -1.82 -29.39 16 7 C 0.27 14.46 4.91 85.63 0.42 14.89 16 8 C -0.54 -30.91 9.39 25.60 0.24 -30.67 16 9 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 10 C 0.01 0.75 5.46 84.65 0.46 1.21 16 11 N -0.93 -55.15 13.29 21.45 0.28 -54.87 16 12 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 16 C 0.21 8.80 6.55 38.21 0.25 9.05 16 17 C -0.22 -9.54 9.20 22.40 0.21 -9.34 16 18 C -0.08 -2.85 10.04 22.25 0.22 -2.62 16 19 C -0.20 -5.75 10.04 22.29 0.22 -5.53 16 20 C -0.07 -2.08 10.04 22.25 0.22 -1.85 16 21 C -0.22 -7.33 9.21 22.40 0.21 -7.13 16 22 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 32 H 0.08 2.55 6.20 -2.39 -0.01 2.53 16 33 H 0.01 0.35 8.07 -2.39 -0.02 0.33 16 34 H 0.01 0.45 6.20 -2.39 -0.01 0.44 16 35 H 0.27 14.97 8.31 -92.70 -0.77 14.19 16 36 H 0.09 4.63 6.15 -2.91 -0.02 4.62 16 37 H 0.13 3.85 8.06 -2.91 -0.02 3.82 16 38 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 39 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.13 3.83 6.14 -2.91 -0.02 3.81 16 Total: -1.00 -63.32 327.74 5.60 -57.72 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.98 Total: 17.22 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 4.13 Total: -37.27 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -1.53 Total: -84.26 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.32 5.60 -57.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019804338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.257 kcal (2) G-P(sol) polarization free energy of solvation -63.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds