Wall clock time and date at job start Mon Mar 30 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46919 * 2 1 4 4 C 1.52995 * 109.47123 * 239.99729 * 2 1 3 5 5 C 1.50700 * 109.47215 * 119.99612 * 2 1 3 6 6 C 1.38292 * 119.92221 * 59.99888 * 5 2 1 7 7 C 1.38103 * 120.06781 * 180.02562 * 6 5 2 8 8 C 1.38907 * 119.93251 * 359.97438 * 7 6 5 9 9 N 1.39668 * 120.07688 * 179.97438 * 8 7 6 10 10 C 1.46506 * 120.00181 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99967 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00542 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99408 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47011 * 90.00022 * 16 14 12 18 18 H 1.48498 * 109.47118 * 209.99881 * 16 14 12 19 19 H 1.48499 * 109.47134 * 330.00401 * 16 14 12 20 20 C 1.38907 * 119.84667 * 0.25939 * 8 7 6 21 21 C 1.38108 * 119.92754 * 359.48722 * 20 8 7 22 22 H 1.08995 * 109.46999 * 300.00024 * 1 2 3 23 23 H 1.08997 * 109.47411 * 60.00010 * 1 2 3 24 24 H 1.08998 * 109.46996 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47066 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.46736 * 299.99717 * 3 2 1 27 27 H 1.08998 * 109.47606 * 59.99751 * 3 2 1 28 28 H 1.09004 * 109.47303 * 300.00204 * 4 2 1 29 29 H 1.09006 * 109.47324 * 59.99798 * 4 2 1 30 30 H 1.08997 * 109.47351 * 179.97438 * 4 2 1 31 31 H 1.07994 * 119.96192 * 0.02562 * 6 5 2 32 32 H 1.08003 * 120.03201 * 179.97438 * 7 6 5 33 33 H 0.97001 * 120.00568 * 0.02562 * 9 8 7 34 34 H 1.09001 * 109.47060 * 300.00571 * 10 9 8 35 35 H 1.09004 * 109.47073 * 60.00060 * 10 9 8 36 36 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 37 37 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 38 38 H 0.96999 * 119.99910 * 179.97438 * 15 14 12 39 39 H 1.08004 * 120.03686 * 179.72396 * 20 8 7 40 40 H 1.07998 * 119.96672 * 180.25929 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 1.6973 -2.0343 1.4479 7 6 2.1556 -2.6880 2.5748 8 6 2.9543 -2.0145 3.4901 9 7 3.4190 -2.6725 4.6311 10 6 4.2609 -1.9603 5.5957 11 6 4.6301 -2.9022 6.7435 12 6 5.4955 -2.1695 7.7360 13 1 5.7565 -1.1355 7.5650 14 6 5.9541 -2.8189 8.8624 15 7 5.6367 -4.0782 9.0703 16 14 7.0275 -1.9108 10.0923 17 1 6.1684 -1.2654 11.1173 18 1 7.9471 -2.8725 10.7516 19 1 7.8201 -0.8726 9.3859 20 6 3.2849 -0.6832 3.2711 21 6 2.8277 -0.0369 2.1395 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 1.6767 -1.7490 -1.2492 29 1 1.6767 -0.2075 -2.1392 30 1 3.1300 -0.7209 -1.2494 31 1 1.0767 -2.5575 0.7356 32 1 1.8932 -3.7219 2.7441 33 1 3.1844 -3.6010 4.7849 34 1 5.1696 -1.6171 5.1011 35 1 3.7158 -1.1026 5.9900 36 1 3.7215 -3.2456 7.2381 37 1 5.1752 -3.7596 6.3488 38 1 5.9597 -4.5353 9.8626 39 1 3.9021 -0.1552 3.9830 40 1 3.0878 0.9970 1.9665 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020042549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:36 Heat of formation + Delta-G solvation = -4.678426 kcal Electronic energy + Delta-G solvation = -17252.936143 eV Core-core repulsion = 14645.167835 eV Total energy + Delta-G solvation = -2607.768308 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.65558 -37.12148 -34.71935 -32.87764 -30.84740 -30.07327 -27.46310 -27.33732 -27.27674 -24.55103 -22.42359 -21.89391 -20.44491 -19.01348 -17.23540 -16.23503 -15.60963 -15.02926 -14.51574 -14.31464 -14.23395 -14.05562 -13.81616 -13.23704 -13.08927 -12.67573 -12.57474 -12.15097 -12.13664 -11.87729 -11.73736 -11.35395 -11.14399 -11.05605 -10.96729 -10.63863 -10.52455 -10.43390 -10.26978 -9.59888 -9.32485 -9.30816 -8.59535 -8.44875 -6.84763 -6.10819 -4.14225 1.77339 1.95830 3.27342 3.33614 3.36878 4.06218 4.18931 4.41864 4.72374 4.79199 5.00947 5.26050 5.26746 5.31159 5.37257 5.51246 5.55557 5.70209 5.70983 5.79990 5.82048 5.93575 5.98735 6.02591 6.06677 6.21448 6.28560 6.29040 6.29241 6.39298 6.68855 6.74754 6.79702 7.01237 7.22955 7.48052 7.61918 7.79908 7.96439 8.19223 8.36717 8.91759 9.50630 11.00867 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.049648 B = 0.003557 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.829975 B = 7868.980067 C = 8231.142695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.019 4.019 3 C -0.142 4.142 4 C -0.137 4.137 5 C -0.150 4.150 6 C -0.066 4.066 7 C -0.207 4.207 8 C 0.225 3.775 9 N -0.741 5.741 10 C 0.126 3.874 11 C 0.013 3.987 12 C -0.523 4.523 13 H 0.058 0.942 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.201 4.201 21 C -0.071 4.071 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.396 0.604 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.262 0.738 39 H 0.120 0.880 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 6.776 -17.843 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.019 4.019 3 C -0.200 4.200 4 C -0.194 4.194 5 C -0.152 4.152 6 C -0.085 4.085 7 C -0.230 4.230 8 C 0.118 3.882 9 N -0.367 5.367 10 C 0.003 3.997 11 C -0.024 4.024 12 C -0.561 4.561 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.224 4.224 21 C -0.089 4.089 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.230 0.770 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.344 6.742 -17.548 20.567 hybrid contribution 0.538 -0.048 0.926 1.072 sum -7.806 6.694 -16.623 19.546 Atomic orbital electron populations 1.21883 0.94471 1.01718 1.01324 1.19303 0.95044 0.94620 0.92949 1.21943 1.01147 0.95409 1.01455 1.21885 1.01188 1.00065 0.96262 1.19356 1.03638 0.94608 0.97596 1.20551 0.98061 0.93853 0.96023 1.20532 1.05249 1.00208 0.97000 1.18005 0.91477 0.91790 0.86905 1.45238 1.55333 1.14408 1.21675 1.21668 0.91965 0.96354 0.89749 1.19274 0.97056 0.94648 0.91436 1.21044 1.31328 0.97984 1.05779 0.92350 1.25010 0.96355 0.94902 0.98062 1.69961 1.45420 1.10039 1.27796 0.86514 0.80310 0.79504 0.81231 1.20547 1.21141 1.19738 1.20692 1.07269 0.93980 1.00483 1.20844 0.95925 0.99096 0.93050 0.92634 0.93000 0.92689 0.92382 0.92935 0.92378 0.92686 0.93008 0.92632 0.87017 0.86768 0.76966 0.93400 0.93399 0.96038 0.96025 0.92819 0.86181 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.29 37.16 0.31 -0.97 16 2 C -0.02 -0.20 0.85 -155.66 -0.13 -0.33 16 3 C -0.14 -1.32 7.13 37.16 0.26 -1.05 16 4 C -0.14 -1.27 8.29 37.15 0.31 -0.97 16 5 C -0.15 -1.92 4.76 -104.59 -0.50 -2.42 16 6 C -0.07 -0.87 8.70 -39.61 -0.34 -1.22 16 7 C -0.21 -3.06 9.90 -39.38 -0.39 -3.45 16 8 C 0.22 3.78 6.65 -83.79 -0.56 3.22 16 9 N -0.74 -13.45 5.73 -58.63 -0.34 -13.79 16 10 C 0.13 2.61 4.85 -4.04 -0.02 2.59 16 11 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 12 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 13 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 16 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.20 -3.24 9.31 -39.38 -0.37 -3.61 16 21 C -0.07 -0.98 8.97 -39.61 -0.36 -1.34 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.50 7.38 -51.93 -0.38 0.12 16 25 H 0.06 0.54 7.51 -51.93 -0.39 0.15 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.54 7.51 -51.93 -0.39 0.15 16 28 H 0.05 0.50 7.38 -51.93 -0.38 0.12 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.11 1.24 7.09 -52.49 -0.37 0.87 16 32 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 33 H 0.40 6.84 8.49 -40.82 -0.35 6.50 16 34 H 0.05 0.99 7.96 -51.93 -0.41 0.58 16 35 H 0.05 0.99 7.94 -51.93 -0.41 0.58 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.12 1.96 6.73 -52.48 -0.35 1.60 16 40 H 0.12 1.42 5.88 -52.49 -0.31 1.11 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -28.98 322.21 -8.78 -37.76 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.68 Total: 3.11 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -2.34 Total: -22.59 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.40 Total: -39.43 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.98 -8.78 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020042549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.083 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds