Wall clock time and date at job start Mon Mar 30 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46919 * 2 1 4 4 C 1.52995 * 109.47123 * 239.99729 * 2 1 3 5 5 C 1.50700 * 109.47215 * 119.99612 * 2 1 3 6 6 C 1.38292 * 119.92221 * 59.99888 * 5 2 1 7 7 C 1.38103 * 120.06781 * 180.02562 * 6 5 2 8 8 C 1.38907 * 119.93251 * 359.97438 * 7 6 5 9 9 N 1.39668 * 120.07688 * 179.97438 * 8 7 6 10 10 C 1.46506 * 120.00181 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99967 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00542 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99408 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47011 * 90.00022 * 16 14 12 18 18 H 1.48498 * 109.47118 * 209.99881 * 16 14 12 19 19 H 1.48499 * 109.47134 * 330.00401 * 16 14 12 20 20 C 1.38907 * 119.84667 * 0.25939 * 8 7 6 21 21 C 1.38108 * 119.92754 * 359.48722 * 20 8 7 22 22 H 1.08995 * 109.46999 * 300.00024 * 1 2 3 23 23 H 1.08997 * 109.47411 * 60.00010 * 1 2 3 24 24 H 1.08998 * 109.46996 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47066 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.46736 * 299.99717 * 3 2 1 27 27 H 1.08998 * 109.47606 * 59.99751 * 3 2 1 28 28 H 1.09004 * 109.47303 * 300.00204 * 4 2 1 29 29 H 1.09006 * 109.47324 * 59.99798 * 4 2 1 30 30 H 1.08997 * 109.47351 * 179.97438 * 4 2 1 31 31 H 1.07994 * 119.96192 * 0.02562 * 6 5 2 32 32 H 1.08003 * 120.03201 * 179.97438 * 7 6 5 33 33 H 0.97001 * 120.00568 * 0.02562 * 9 8 7 34 34 H 1.09001 * 109.47060 * 300.00571 * 10 9 8 35 35 H 1.09004 * 109.47073 * 60.00060 * 10 9 8 36 36 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 37 37 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 38 38 H 0.96999 * 119.99910 * 179.97438 * 15 14 12 39 39 H 1.08004 * 120.03686 * 179.72396 * 20 8 7 40 40 H 1.07998 * 119.96672 * 180.25929 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 1.6973 -2.0343 1.4479 7 6 2.1556 -2.6880 2.5748 8 6 2.9543 -2.0145 3.4901 9 7 3.4190 -2.6725 4.6311 10 6 4.2609 -1.9603 5.5957 11 6 4.6301 -2.9022 6.7435 12 6 5.4955 -2.1695 7.7360 13 1 5.7565 -1.1355 7.5650 14 6 5.9541 -2.8189 8.8624 15 7 5.6367 -4.0782 9.0703 16 14 7.0275 -1.9108 10.0923 17 1 6.1684 -1.2654 11.1173 18 1 7.9471 -2.8725 10.7516 19 1 7.8201 -0.8726 9.3859 20 6 3.2849 -0.6832 3.2711 21 6 2.8277 -0.0369 2.1395 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 1.6767 -1.7490 -1.2492 29 1 1.6767 -0.2075 -2.1392 30 1 3.1300 -0.7209 -1.2494 31 1 1.0767 -2.5575 0.7356 32 1 1.8932 -3.7219 2.7441 33 1 3.1844 -3.6010 4.7849 34 1 5.1696 -1.6171 5.1011 35 1 3.7158 -1.1026 5.9900 36 1 3.7215 -3.2456 7.2381 37 1 5.1752 -3.7596 6.3488 38 1 5.9597 -4.5353 9.8626 39 1 3.9021 -0.1552 3.9830 40 1 3.0878 0.9970 1.9665 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020042549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:36 Heat of formation + Delta-G solvation = -19.438879 kcal Electronic energy + Delta-G solvation = -17253.576204 eV Core-core repulsion = 14645.167835 eV Total energy + Delta-G solvation = -2608.408369 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.74440 -38.27779 -36.18650 -34.73949 -32.05718 -31.69857 -28.84559 -28.16425 -27.98757 -26.35653 -23.83150 -23.13245 -21.98343 -19.96112 -18.82278 -17.99762 -16.84675 -16.40394 -16.16100 -15.82920 -15.36500 -15.02037 -14.95415 -14.36284 -14.31919 -14.09465 -13.82903 -13.43875 -13.18852 -13.13420 -12.85068 -12.66490 -12.48339 -12.46326 -12.27400 -12.11084 -11.74338 -11.56916 -11.48244 -11.36367 -11.20662 -10.73196 -10.54282 -9.73730 -8.26155 -8.15174 -6.37720 0.62357 0.80039 1.40180 1.41331 1.52677 2.35921 2.70370 3.04340 3.08539 3.87175 3.93827 4.20482 4.24160 4.24804 4.42180 4.50932 4.52949 4.63010 4.71255 4.84829 4.88122 4.90650 4.96832 4.99363 5.10797 5.12601 5.17827 5.23635 5.30710 5.36997 5.44364 5.55846 5.56076 5.56416 5.70153 5.72751 5.93078 6.07937 6.13979 6.52916 6.76846 6.93999 7.32286 8.86282 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.049648 B = 0.003557 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.829975 B = 7868.980067 C = 8231.142695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.021 4.021 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.141 4.141 6 C -0.067 4.067 7 C -0.209 4.209 8 C 0.198 3.802 9 N -0.748 5.748 10 C 0.149 3.851 11 C 0.022 3.978 12 C -0.545 4.545 13 H 0.064 0.936 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.969 3.031 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.262 1.262 20 C -0.218 4.218 21 C -0.076 4.076 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.137 0.863 32 H 0.125 0.875 33 H 0.398 0.602 34 H 0.045 0.955 35 H 0.045 0.955 36 H -0.001 1.001 37 H -0.001 1.001 38 H 0.265 0.735 39 H 0.110 0.890 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.011 8.135 -19.426 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 C -0.200 4.200 4 C -0.193 4.193 5 C -0.143 4.143 6 C -0.086 4.086 7 C -0.232 4.232 8 C 0.093 3.907 9 N -0.376 5.376 10 C 0.025 3.975 11 C -0.016 4.016 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.793 3.207 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.186 1.186 20 C -0.241 4.241 21 C -0.094 4.094 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.232 0.768 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.857 8.119 -19.172 22.626 hybrid contribution 0.614 -0.457 1.285 1.495 sum -8.243 7.662 -17.887 21.133 Atomic orbital electron populations 1.21873 0.93483 1.02060 1.01853 1.19396 0.95780 0.94979 0.91926 1.21951 1.01012 0.94865 1.02205 1.21875 1.00702 1.00324 0.96375 1.19780 1.01945 0.94585 0.98016 1.20869 0.97803 0.94130 0.95755 1.20756 1.04607 1.00846 0.97000 1.18217 0.93026 0.92352 0.87058 1.44979 1.56061 1.14442 1.22157 1.21168 0.92330 0.95123 0.88856 1.19097 0.95404 0.94595 0.92479 1.21496 1.31735 0.98525 1.06598 0.91754 1.25971 0.97732 0.95722 1.00175 1.70088 1.46654 1.11692 1.28618 0.85382 0.78422 0.78337 0.78535 1.19688 1.20694 1.18607 1.20805 1.07871 0.94030 1.01378 1.21087 0.95842 1.00003 0.92462 0.93422 0.91223 0.92473 0.92660 0.91242 0.92656 0.92469 0.91232 0.93419 0.84498 0.85697 0.76812 0.93665 0.93637 0.98275 0.98260 0.92592 0.87148 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.29 71.98 0.60 -1.51 16 2 C -0.02 -0.37 0.85 -52.93 -0.05 -0.41 16 3 C -0.14 -2.27 7.13 71.98 0.51 -1.75 16 4 C -0.14 -2.11 8.29 71.98 0.60 -1.52 16 5 C -0.14 -3.35 4.76 -19.84 -0.09 -3.45 16 6 C -0.07 -1.64 8.70 22.25 0.19 -1.44 16 7 C -0.21 -6.03 9.90 22.40 0.22 -5.81 16 8 C 0.20 6.67 6.65 38.21 0.25 6.93 16 9 N -0.75 -28.00 5.73 -339.41 -1.95 -29.95 16 10 C 0.15 6.40 4.85 86.38 0.42 6.82 16 11 C 0.02 1.14 5.09 29.85 0.15 1.29 16 12 C -0.55 -30.75 9.11 25.60 0.23 -30.51 16 13 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 14 C 0.00 0.13 5.46 84.65 0.46 0.60 16 15 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 16 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 C -0.22 -7.04 9.31 22.40 0.21 -6.83 16 21 C -0.08 -2.02 8.97 22.25 0.20 -1.82 16 22 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.86 7.38 -2.39 -0.02 0.85 16 25 H 0.05 0.90 7.51 -2.39 -0.02 0.89 16 26 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.05 0.90 7.51 -2.39 -0.02 0.89 16 28 H 0.06 0.86 7.38 -2.38 -0.02 0.85 16 29 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.14 2.63 7.09 -2.91 -0.02 2.61 16 32 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.40 14.29 8.49 -92.71 -0.79 13.51 16 34 H 0.05 1.93 7.96 -2.39 -0.02 1.91 16 35 H 0.05 1.94 7.94 -2.38 -0.02 1.92 16 36 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.11 3.69 6.73 -2.91 -0.02 3.67 16 40 H 0.14 3.06 5.88 -2.91 -0.02 3.05 16 Total: -1.00 -62.29 322.21 4.49 -57.80 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.22 Total: 21.51 kcal Atomic # 6 Polarization: -43.33 SS G_CDS: 3.91 Total: -39.42 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -1.66 Total: -85.70 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -62.29 4.49 -57.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020042549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.364 kcal (2) G-P(sol) polarization free energy of solvation -62.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds