Wall clock time and date at job start Mon Mar 30 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.50703 * 109.46912 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99770 * 269.72838 * 4 3 2 6 6 C 1.38239 * 119.99901 * 179.76875 * 5 4 3 7 7 C 1.38240 * 119.99645 * 0.50240 * 6 5 4 8 8 C 1.50698 * 119.99659 * 179.72727 * 7 6 5 9 9 H 1.08996 * 109.46813 * 160.02550 * 8 7 6 10 10 C 1.53003 * 109.47156 * 280.02259 * 8 7 6 11 11 N 1.46903 * 109.47571 * 40.02379 * 8 7 6 12 12 C 1.46898 * 110.99984 * 154.99697 * 11 8 7 13 13 C 1.50705 * 109.46581 * 180.02562 * 12 11 8 14 14 H 1.07994 * 120.00457 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99619 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99751 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99722 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46993 * 90.00175 * 17 15 13 19 19 H 1.48503 * 109.46900 * 209.99961 * 17 15 13 20 20 H 1.48494 * 109.47368 * 329.99665 * 17 15 13 21 21 C 1.38227 * 120.00205 * 359.74956 * 7 6 5 22 22 C 1.38232 * 119.99860 * 90.00280 * 4 3 2 23 23 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 24 24 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 26 26 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 27 27 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 28 28 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 29 29 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 30 30 H 1.08001 * 120.00330 * 359.97438 * 5 4 3 31 31 H 1.08001 * 119.99843 * 180.23314 * 6 5 4 32 32 H 1.09000 * 109.47306 * 180.02562 * 10 8 7 33 33 H 1.09000 * 109.47042 * 300.00536 * 10 8 7 34 34 H 1.08996 * 109.47022 * 60.00419 * 10 8 7 35 35 H 1.00901 * 110.99825 * 278.95856 * 11 8 7 36 36 H 1.08997 * 109.47180 * 299.99868 * 12 11 8 37 37 H 1.09000 * 109.47064 * 60.00409 * 12 11 8 38 38 H 0.96998 * 119.99638 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.00251 * 179.97438 * 21 7 6 40 40 H 1.07998 * 120.00407 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2386 1.4480 1.1962 6 6 5.6210 1.4432 1.1957 7 6 6.3117 1.4434 -0.0018 8 6 7.8186 1.4443 -0.0024 9 1 8.1818 1.0933 -0.9682 10 6 8.3279 2.8652 0.2482 11 7 8.3094 0.5542 1.0582 12 6 9.6569 0.0584 0.7478 13 6 10.1254 -0.8497 1.8555 14 1 9.4861 -1.0399 2.7048 15 6 11.3705 -1.4378 1.7845 16 7 12.1493 -1.2058 0.7505 17 14 11.9510 -2.5641 3.1571 18 1 11.5481 -3.9610 2.8549 19 1 13.4300 -2.4883 3.2673 20 1 11.3367 -2.1381 4.4401 21 6 5.6200 1.4431 -1.1986 22 6 4.2376 1.4428 -1.1981 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.6990 1.4527 2.1318 31 1 6.1613 1.4437 2.1308 32 1 9.4179 2.8660 0.2473 33 1 7.9637 3.5257 -0.5387 34 1 7.9647 3.2162 1.2141 35 1 8.2917 1.0163 1.9551 36 1 9.6329 -0.4959 -0.1904 37 1 10.3416 0.9013 0.6544 38 1 13.0251 -1.6198 0.7004 39 1 6.1596 1.4437 -2.1341 40 1 3.6973 1.4434 -2.1332 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:04 Heat of formation + Delta-G solvation = -21.004929 kcal Electronic energy + Delta-G solvation = -17219.655310 eV Core-core repulsion = 14611.179032 eV Total energy + Delta-G solvation = -2608.476278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.54417 -37.95529 -35.82381 -34.73912 -32.37460 -31.71327 -30.45547 -27.95369 -27.14941 -24.28796 -23.87199 -22.99031 -22.08327 -21.02015 -18.69797 -17.28088 -16.76956 -16.44241 -16.05929 -15.66452 -15.54130 -14.90095 -14.77501 -14.46448 -14.27402 -14.13572 -13.84742 -13.58141 -13.36767 -13.17127 -12.84557 -12.71056 -12.55030 -12.42291 -12.21899 -12.00090 -11.93068 -11.76391 -11.59483 -11.42457 -11.22048 -10.67641 -9.71461 -9.33217 -9.06868 -8.23140 -6.34343 0.52661 0.61314 1.40424 1.42465 1.53585 2.39389 2.91136 3.10049 3.58049 3.87659 3.97641 4.04844 4.17851 4.22048 4.31619 4.34206 4.36947 4.60062 4.63229 4.69772 4.79594 4.86608 4.93520 4.93691 5.04699 5.05971 5.15511 5.20200 5.25226 5.28477 5.34805 5.36612 5.50249 5.58592 5.65428 5.81197 5.85126 6.02743 6.22575 6.46093 6.71742 6.88683 7.36531 8.88360 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.028879 B = 0.004066 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.319759 B = 6883.887656 C = 7451.725666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.072 4.072 4 C -0.094 4.094 5 C -0.124 4.124 6 C -0.109 4.109 7 C -0.076 4.076 8 C 0.116 3.884 9 H 0.061 0.939 10 C -0.163 4.163 11 N -0.680 5.680 12 C 0.212 3.788 13 C -0.536 4.536 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.973 3.027 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.262 1.262 21 C -0.128 4.128 22 C -0.121 4.121 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.335 0.665 36 H -0.005 1.005 37 H -0.034 1.034 38 H 0.265 0.735 39 H 0.124 0.876 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.563 7.167 -1.776 21.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.110 4.110 4 C -0.094 4.094 5 C -0.142 4.142 6 C -0.127 4.127 7 C -0.077 4.077 8 C 0.006 3.994 9 H 0.080 0.920 10 C -0.222 4.222 11 N -0.310 5.310 12 C 0.084 3.916 13 C -0.574 4.574 14 H 0.082 0.918 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.147 4.147 22 C -0.139 4.139 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.152 0.848 31 H 0.134 0.866 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.153 0.847 36 H 0.013 0.987 37 H -0.016 1.016 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.704 6.566 -2.101 21.821 hybrid contribution 1.609 0.095 0.505 1.689 sum -19.095 6.661 -1.596 20.286 Atomic orbital electron populations 1.21765 0.94492 1.02009 1.02367 1.21499 0.96573 0.95904 1.01751 1.20618 0.89150 0.97545 1.03652 1.20134 0.96839 0.99645 0.92773 1.21213 0.93531 1.00934 0.98554 1.20999 0.94567 0.99538 0.97604 1.19843 0.94215 0.99487 0.94119 1.20466 0.91561 0.91763 0.95656 0.92035 1.22338 1.00344 0.96740 1.02756 1.60647 1.26274 1.39787 1.04296 1.19189 0.84084 0.92773 0.95543 1.21551 1.00968 1.28420 1.06483 0.91827 1.25955 0.96649 0.98368 0.98731 1.70090 1.10482 1.45371 1.31487 0.85325 0.77201 0.78662 0.79065 1.19964 1.20603 1.18654 1.21159 0.95014 1.01165 0.97328 1.21179 0.93389 1.00818 0.98519 0.92016 0.92563 0.92169 0.92586 0.92820 0.90010 0.90244 0.84765 0.86621 0.93962 0.90771 0.91736 0.84735 0.98672 1.01615 0.92607 0.85820 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.12 -1.97 5.92 30.59 0.18 -1.79 16 3 C -0.07 -1.20 5.35 29.85 0.16 -1.04 16 4 C -0.09 -2.15 5.13 -19.87 -0.10 -2.25 16 5 C -0.12 -3.16 9.70 22.27 0.22 -2.95 16 6 C -0.11 -3.31 9.32 22.27 0.21 -3.10 16 7 C -0.08 -2.48 4.96 -19.87 -0.10 -2.57 16 8 C 0.12 4.31 2.79 44.17 0.12 4.43 16 9 H 0.06 2.46 7.66 -2.39 -0.02 2.45 16 10 C -0.16 -5.27 9.14 71.98 0.66 -4.62 16 11 N -0.68 -30.23 5.69 -499.46 -2.84 -33.08 16 12 C 0.21 11.62 5.24 85.56 0.45 12.06 16 13 C -0.54 -31.19 9.32 25.60 0.24 -30.95 16 14 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 15 C 0.00 0.07 5.46 84.66 0.46 0.53 16 16 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 17 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 C -0.13 -3.66 9.67 22.27 0.22 -3.45 16 22 C -0.12 -2.91 9.70 22.27 0.22 -2.70 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 29 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 30 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 31 H 0.12 3.54 7.25 -2.91 -0.02 3.52 16 32 H 0.04 1.51 7.45 -2.39 -0.02 1.49 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 35 H 0.33 14.06 7.81 -89.69 -0.70 13.36 16 36 H 0.00 -0.29 8.05 -2.39 -0.02 -0.31 16 37 H -0.03 -1.96 7.44 -2.39 -0.02 -1.98 16 38 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.12 3.25 8.04 -2.91 -0.02 3.22 16 40 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -65.09 330.53 3.39 -61.69 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.29 Total: 20.97 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 3.64 Total: -39.56 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -2.56 Total: -90.01 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.09 3.39 -61.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.687 kcal (2) G-P(sol) polarization free energy of solvation -65.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds