Wall clock time and date at job start Mon Mar 30 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.50703 * 109.46912 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99770 * 269.72838 * 4 3 2 6 6 C 1.38235 * 119.99869 * 179.74639 * 5 4 3 7 7 C 1.38241 * 119.99812 * 0.54713 * 6 5 4 8 8 C 1.50694 * 119.99838 * 179.72541 * 7 6 5 9 9 H 1.09000 * 109.47361 * 199.98062 * 8 7 6 10 10 C 1.53002 * 109.47310 * 79.98214 * 8 7 6 11 11 N 1.46906 * 109.47518 * 319.98034 * 8 7 6 12 12 C 1.46899 * 110.99982 * 204.99845 * 11 8 7 13 13 C 1.50698 * 109.46800 * 179.97438 * 12 11 8 14 14 H 1.08003 * 120.00136 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99887 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00062 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00119 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47476 * 89.99519 * 17 15 13 19 19 H 1.48495 * 109.47088 * 210.00068 * 17 15 13 20 20 H 1.48499 * 109.46702 * 329.99442 * 17 15 13 21 21 C 1.38227 * 120.00044 * 359.70483 * 7 6 5 22 22 C 1.38232 * 119.99860 * 90.00280 * 4 3 2 23 23 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 25 25 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 26 26 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 27 27 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 28 28 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 29 29 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 30 30 H 1.08001 * 120.00330 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.00314 * 180.27289 * 6 5 4 32 32 H 1.09004 * 109.47492 * 179.97438 * 10 8 7 33 33 H 1.09008 * 109.47017 * 299.99948 * 10 8 7 34 34 H 1.08997 * 109.46881 * 59.99612 * 10 8 7 35 35 H 1.00900 * 110.99772 * 81.04764 * 11 8 7 36 36 H 1.09001 * 109.47643 * 300.00006 * 12 11 8 37 37 H 1.09002 * 109.47065 * 60.00441 * 12 11 8 38 38 H 0.97003 * 120.00056 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.00251 * 179.97438 * 21 7 6 40 40 H 1.07998 * 120.00407 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2386 1.4480 1.1962 6 6 5.6209 1.4427 1.1957 7 6 6.3117 1.4434 -0.0018 8 6 7.8186 1.4439 -0.0024 9 1 8.1815 1.7955 -0.9682 10 6 8.3292 0.0234 0.2479 11 7 8.3085 2.3343 1.0584 12 6 9.6556 2.8313 0.7481 13 6 10.1233 3.7397 1.8559 14 1 9.4840 3.9285 2.7057 15 6 11.3674 4.3297 1.7846 16 7 12.1461 4.0995 0.7501 17 14 11.9475 5.4552 3.1581 18 1 12.6601 4.6550 4.1861 19 1 12.8676 6.4800 2.6029 20 1 10.7757 6.1253 3.7770 21 6 5.6200 1.4431 -1.1986 22 6 4.2376 1.4428 -1.1981 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.6990 1.4527 2.1318 31 1 6.1614 1.4426 2.1308 32 1 9.4192 0.0237 0.2470 33 1 7.9663 -0.3282 1.2138 34 1 7.9657 -0.6372 -0.5392 35 1 8.2913 1.8720 1.9551 36 1 10.3411 1.9891 0.6546 37 1 9.6311 3.3859 -0.1899 38 1 13.0215 4.5143 0.7001 39 1 6.1596 1.4441 -2.1341 40 1 3.6973 1.4434 -2.1332 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:07 Heat of formation + Delta-G solvation = -4.867423 kcal Electronic energy + Delta-G solvation = -17195.831256 eV Core-core repulsion = 14588.054752 eV Total energy + Delta-G solvation = -2607.776503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41089 -36.54523 -34.72508 -32.80710 -30.99306 -30.59606 -29.10999 -26.29566 -25.88731 -22.86329 -22.58127 -21.64798 -20.99572 -19.79416 -16.75097 -15.82651 -15.64183 -14.94816 -14.70703 -14.40820 -14.09082 -13.72032 -13.47096 -13.44560 -13.07775 -12.88522 -12.43719 -12.13094 -11.92505 -11.87981 -11.56324 -11.30344 -11.24654 -11.05244 -10.77843 -10.75517 -10.70320 -10.47791 -10.36506 -9.88224 -9.18436 -8.61526 -8.49151 -8.18131 -7.27843 -6.02819 -4.04585 1.64161 1.71580 3.32138 3.38238 3.43120 4.02746 4.43742 4.74196 4.79726 4.96253 5.04513 5.17249 5.26789 5.32805 5.34131 5.40878 5.47489 5.61781 5.65223 5.68013 5.74468 5.80531 5.84331 5.84691 6.04691 6.12507 6.15515 6.25317 6.33934 6.39479 6.50439 6.75264 6.84449 7.04372 7.26437 7.31959 7.43581 7.79417 8.13317 8.39481 8.61296 9.04635 9.60251 11.08251 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.040616 B = 0.003777 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.213455 B = 7411.620781 C = 7742.570853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.077 4.077 4 C -0.098 4.098 5 C -0.120 4.120 6 C -0.094 4.094 7 C -0.054 4.054 8 C 0.115 3.885 9 H 0.079 0.921 10 C -0.173 4.173 11 N -0.681 5.681 12 C 0.195 3.805 13 C -0.514 4.514 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.118 4.118 22 C -0.120 4.120 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.329 0.671 36 H -0.012 1.012 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.117 0.883 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.494 -8.819 -2.469 20.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.114 4.114 4 C -0.098 4.098 5 C -0.138 4.138 6 C -0.112 4.112 7 C -0.055 4.055 8 C 0.004 3.996 9 H 0.097 0.903 10 C -0.232 4.232 11 N -0.310 5.310 12 C 0.068 3.932 13 C -0.552 4.552 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.137 4.137 22 C -0.138 4.138 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.146 0.854 36 H 0.006 0.994 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.135 0.865 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.615 -8.192 -2.799 20.530 hybrid contribution 1.065 -0.104 0.790 1.330 sum -17.550 -8.296 -2.009 19.516 Atomic orbital electron populations 1.21797 0.95975 1.01492 1.01746 1.21511 0.95311 0.96463 1.02336 1.20576 0.91433 0.96951 1.02474 1.19744 0.95106 1.01624 0.93347 1.20961 0.94255 1.01506 0.97118 1.20943 0.93486 0.98632 0.98177 1.20005 0.95727 0.96908 0.92872 1.20470 0.89867 0.91412 0.97817 0.90261 1.22460 1.01761 0.97596 1.01344 1.60783 1.29366 1.37935 1.02956 1.19582 0.82136 0.94014 0.97448 1.21189 1.00471 1.27695 1.05865 0.91989 1.24987 0.96635 0.96877 0.96077 1.69963 1.09995 1.44455 1.29378 0.86486 0.78575 0.80409 0.81881 1.20744 1.21246 1.19758 1.20989 0.93983 1.01067 0.97636 1.20871 0.94027 1.01841 0.97111 0.92856 0.92769 0.92798 0.91969 0.91916 0.91416 0.91342 0.86727 0.86063 0.91996 0.92800 0.92959 0.85427 0.99403 0.95462 0.92924 0.86501 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 3 C -0.08 -0.75 5.35 -27.88 -0.15 -0.90 16 4 C -0.10 -1.24 5.13 -104.62 -0.54 -1.78 16 5 C -0.12 -1.63 9.70 -39.58 -0.38 -2.02 16 6 C -0.09 -1.46 9.32 -39.58 -0.37 -1.82 16 7 C -0.05 -0.89 4.96 -104.63 -0.52 -1.41 16 8 C 0.12 2.08 2.79 -68.86 -0.19 1.89 16 9 H 0.08 1.50 7.66 -51.93 -0.40 1.11 16 10 C -0.17 -2.76 9.14 37.16 0.34 -2.42 16 11 N -0.68 -14.65 5.69 -109.22 -0.62 -15.28 16 12 C 0.19 5.11 5.24 -4.98 -0.03 5.08 16 13 C -0.51 -14.65 9.32 -34.44 -0.32 -14.97 16 14 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 17 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.12 -1.73 9.67 -39.58 -0.38 -2.12 16 22 C -0.12 -1.57 9.70 -39.58 -0.38 -1.96 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.12 1.85 7.25 -52.49 -0.38 1.47 16 32 H 0.06 1.07 7.45 -51.93 -0.39 0.68 16 33 H 0.05 0.81 8.13 -51.92 -0.42 0.38 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.33 6.72 7.81 -39.29 -0.31 6.42 16 36 H -0.01 -0.32 7.44 -51.93 -0.39 -0.71 16 37 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 40 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -30.11 330.53 -9.62 -39.73 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.89 Total: 2.83 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -2.81 Total: -22.84 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.11 Total: -41.53 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.11 -9.62 -39.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.862 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds