Wall clock time and date at job start Mon Mar 30 2020 06:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 C 1.50706 * 109.47030 * 120.00319 * 2 1 3 5 5 C 1.38234 * 120.00196 * 120.00088 * 4 2 1 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00328 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46786 * 339.99822 * 8 7 6 10 10 C 1.52995 * 109.47341 * 100.00049 * 8 7 6 11 11 N 1.46899 * 109.47465 * 220.00330 * 8 7 6 12 12 C 1.46897 * 111.00379 * 154.99949 * 11 8 7 13 13 C 1.50703 * 109.47171 * 180.02562 * 12 11 8 14 14 H 1.07995 * 120.00006 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99776 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00400 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99919 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47147 * 90.00194 * 17 15 13 19 19 H 1.48498 * 109.47221 * 210.00075 * 17 15 13 20 20 H 1.48497 * 109.47185 * 330.00124 * 17 15 13 21 21 C 1.38235 * 119.99899 * 359.95697 * 7 6 5 22 22 C 1.38234 * 120.00205 * 0.02562 * 21 7 6 23 23 H 1.09004 * 109.47334 * 299.99945 * 1 2 3 24 24 H 1.09001 * 109.47441 * 59.99583 * 1 2 3 25 25 H 1.08994 * 109.47514 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46790 * 239.99929 * 2 1 3 27 27 H 1.09004 * 109.47360 * 60.00072 * 3 2 1 28 28 H 1.08994 * 109.47197 * 179.97438 * 3 2 1 29 29 H 1.08991 * 109.46972 * 300.00052 * 3 2 1 30 30 H 1.08000 * 119.99516 * 0.24808 * 5 4 2 31 31 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47531 * 180.02562 * 10 8 7 33 33 H 1.08998 * 109.46960 * 300.00217 * 10 8 7 34 34 H 1.09002 * 109.47366 * 60.00128 * 10 8 7 35 35 H 1.00905 * 110.99983 * 278.95743 * 11 8 7 36 36 H 1.09001 * 109.46759 * 299.99631 * 12 11 8 37 37 H 1.08992 * 109.47226 * 59.99690 * 12 11 8 38 38 H 0.96999 * 120.00230 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.00043 * 179.97438 * 21 7 6 40 40 H 1.07997 * 120.00455 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8270 -1.8344 1.1036 6 6 3.2882 -2.4858 2.2323 7 6 2.9551 -2.0129 3.4878 8 6 3.4573 -2.7233 4.7183 9 1 3.7458 -3.7416 4.4575 10 6 4.6699 -1.9774 5.2787 11 7 2.3939 -2.7599 5.7311 12 6 2.5830 -3.8881 6.6526 13 6 1.4753 -3.8932 7.6744 14 1 0.7079 -3.1340 7.6427 15 6 1.4416 -4.8672 8.6497 16 7 2.3764 -5.7915 8.6887 17 14 0.0691 -4.8731 9.9168 18 1 -1.0656 -5.6883 9.4135 19 1 0.5710 -5.4547 11.1876 20 1 -0.3894 -3.4812 10.1564 21 6 2.1615 -0.8882 3.6147 22 6 1.7006 -0.2366 2.4860 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1299 1.4424 0.0005 29 1 1.6767 1.9562 -0.8899 30 1 3.0912 -2.2010 0.1227 31 1 3.9088 -3.3641 2.1332 32 1 5.0334 -2.4914 6.1684 33 1 5.4589 -1.9503 4.5272 34 1 4.3814 -0.9591 5.5394 35 1 2.3435 -1.8866 6.2341 36 1 2.5636 -4.8225 6.0916 37 1 3.5435 -3.7876 7.1578 38 1 2.3525 -6.4769 9.3746 39 1 1.9009 -0.5190 4.5956 40 1 1.0803 0.6419 2.5851 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:12 Heat of formation + Delta-G solvation = -1.563105 kcal Electronic energy + Delta-G solvation = -17437.204497 eV Core-core repulsion = 14829.571280 eV Total energy + Delta-G solvation = -2607.633217 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53656 -36.74827 -34.71339 -32.71199 -30.63817 -30.31168 -28.23470 -27.23629 -25.97923 -23.65453 -22.66868 -21.75444 -20.41502 -19.60717 -16.80663 -16.04256 -15.24348 -14.94510 -14.63700 -14.10800 -14.00206 -13.69297 -13.57258 -13.37569 -13.03118 -12.69017 -12.54127 -12.35006 -11.95906 -11.79767 -11.51040 -11.29343 -11.18802 -11.11716 -10.79936 -10.78277 -10.66252 -10.44385 -10.32000 -9.87810 -9.18924 -8.60493 -8.48487 -8.18259 -7.27494 -6.02622 -4.04402 1.65312 1.72448 3.32885 3.38533 3.42247 4.04369 4.43848 4.67603 4.77973 5.06526 5.12601 5.26518 5.29372 5.33271 5.39268 5.43193 5.50837 5.63465 5.67163 5.72630 5.74098 5.79287 5.88619 5.92937 6.10301 6.14161 6.19148 6.25476 6.33925 6.40087 6.50724 6.76695 6.85500 7.04953 7.26743 7.32310 7.43883 7.79610 8.13544 8.39710 8.61568 9.04817 9.60453 11.08444 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.032580 B = 0.004228 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.208631 B = 6620.546919 C = 7065.553220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.092 4.092 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.054 4.054 8 C 0.115 3.885 9 H 0.079 0.921 10 C -0.173 4.173 11 N -0.680 5.680 12 C 0.194 3.806 13 C -0.513 4.513 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.094 4.094 22 C -0.117 4.117 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.329 0.671 36 H 0.027 0.973 37 H -0.012 1.012 38 H 0.261 0.739 39 H 0.121 0.879 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 11.788 -15.874 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.200 4.200 4 C -0.092 4.092 5 C -0.139 4.139 6 C -0.137 4.137 7 C -0.055 4.055 8 C 0.005 3.995 9 H 0.097 0.903 10 C -0.232 4.232 11 N -0.310 5.310 12 C 0.068 3.932 13 C -0.552 4.552 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.113 4.113 22 C -0.135 4.135 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.146 0.854 36 H 0.045 0.955 37 H 0.006 0.994 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.017 11.271 -16.153 19.723 hybrid contribution 0.066 0.059 1.304 1.307 sum 1.083 11.331 -14.848 18.709 Atomic orbital electron populations 1.21855 0.94563 1.02076 1.01628 1.20069 0.95807 0.95794 0.95555 1.21848 1.01114 0.95403 1.01648 1.19716 0.98883 0.96254 0.94385 1.20897 0.98970 0.95972 0.98064 1.20980 1.00716 0.99944 0.92052 1.20000 0.96312 0.94833 0.94351 1.20465 0.90152 0.97938 0.90989 0.90284 1.22457 0.98800 1.00624 1.01276 1.60777 1.43952 1.07935 1.18340 1.19584 0.95500 0.88410 0.89711 1.21185 1.10199 1.12478 1.11345 0.91993 1.24983 0.96218 0.95479 0.97878 1.69962 1.33620 1.15423 1.34779 0.86487 0.82021 0.78240 0.80585 1.20621 1.21321 1.19854 1.20935 0.96796 0.95170 0.98368 1.20889 1.00577 1.00066 0.92006 0.92409 0.92774 0.92484 0.90914 0.92459 0.92672 0.92752 0.86804 0.86518 0.92007 0.92970 0.92805 0.85433 0.95474 0.99392 0.92930 0.86089 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.01 37.16 0.33 -1.02 16 2 C -0.05 -0.54 3.09 -91.77 -0.28 -0.82 16 3 C -0.14 -1.25 9.00 37.16 0.33 -0.92 16 4 C -0.09 -1.16 4.78 -104.62 -0.50 -1.66 16 5 C -0.12 -1.58 9.67 -39.58 -0.38 -1.97 16 6 C -0.12 -1.74 9.67 -39.59 -0.38 -2.12 16 7 C -0.05 -0.88 4.96 -104.63 -0.52 -1.40 16 8 C 0.12 2.08 2.79 -68.87 -0.19 1.89 16 9 H 0.08 1.50 7.66 -51.93 -0.40 1.10 16 10 C -0.17 -2.75 9.14 37.15 0.34 -2.41 16 11 N -0.68 -14.61 5.69 -109.23 -0.62 -15.23 16 12 C 0.19 5.10 5.24 -4.98 -0.03 5.07 16 13 C -0.51 -14.63 9.32 -34.44 -0.32 -14.95 16 14 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 17 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.09 -1.46 9.32 -39.58 -0.37 -1.82 16 22 C -0.12 -1.58 8.71 -39.58 -0.34 -1.93 16 23 H 0.06 0.55 7.40 -51.93 -0.38 0.17 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 27 H 0.06 0.51 7.38 -51.93 -0.38 0.12 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.11 1.24 7.95 -52.49 -0.42 0.82 16 31 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 32 H 0.06 1.07 7.45 -51.93 -0.39 0.68 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.81 8.13 -51.93 -0.42 0.38 16 35 H 0.33 6.72 7.81 -39.29 -0.31 6.41 16 36 H 0.03 0.77 8.06 -51.93 -0.42 0.36 16 37 H -0.01 -0.32 7.44 -51.93 -0.39 -0.71 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.12 1.85 7.25 -52.49 -0.38 1.47 16 40 H 0.11 1.34 7.10 -52.49 -0.37 0.96 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -30.02 326.37 -9.14 -39.16 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.75 Total: 3.11 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -2.41 Total: -22.56 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.11 Total: -41.45 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.02 -9.14 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.600 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds