Wall clock time and date at job start Mon Mar 30 2020 06:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46885 * 2 1 4 4 C 1.50703 * 109.47068 * 119.99711 * 2 1 3 5 5 C 1.38233 * 119.99777 * 120.00491 * 4 2 1 6 6 C 1.38230 * 119.99925 * 180.02562 * 5 4 2 7 7 C 1.38236 * 119.99987 * 359.95616 * 6 5 4 8 8 C 1.50702 * 120.00097 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47294 * 19.99463 * 8 7 6 10 10 C 1.53002 * 109.47093 * 259.99753 * 8 7 6 11 11 N 1.46905 * 109.47206 * 139.99744 * 8 7 6 12 12 C 1.46901 * 110.99870 * 205.00135 * 11 8 7 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 8 14 14 H 1.08000 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99532 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47043 * 89.99858 * 17 15 13 19 19 H 1.48494 * 109.47326 * 209.99769 * 17 15 13 20 20 H 1.48497 * 109.47436 * 330.00047 * 17 15 13 21 21 C 1.38238 * 120.00103 * 0.27064 * 7 6 5 22 22 C 1.38234 * 119.99679 * 359.54224 * 21 7 6 23 23 H 1.09000 * 109.47100 * 60.00407 * 1 2 3 24 24 H 1.09003 * 109.46841 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47356 * 300.00338 * 1 2 3 26 26 H 1.08995 * 109.47658 * 240.00078 * 2 1 3 27 27 H 1.08999 * 109.47298 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47457 * 300.00229 * 3 2 1 29 29 H 1.09011 * 109.47134 * 59.99878 * 3 2 1 30 30 H 1.07993 * 120.00294 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.00329 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.47105 * 60.00118 * 10 8 7 33 33 H 1.08996 * 109.46950 * 179.97438 * 10 8 7 34 34 H 1.09003 * 109.46813 * 300.00004 * 10 8 7 35 35 H 1.00901 * 110.99869 * 81.04847 * 11 8 7 36 36 H 1.09004 * 109.47031 * 299.99620 * 12 11 8 37 37 H 1.08995 * 109.47111 * 59.99900 * 12 11 8 38 38 H 0.97001 * 119.99132 * 180.02562 * 16 15 13 39 39 H 1.07997 * 119.99876 * 179.72824 * 21 7 6 40 40 H 1.08002 * 119.99886 * 180.20034 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8272 -1.8342 1.1037 6 6 3.2875 -2.4861 2.2324 7 6 2.9538 -2.0136 3.4879 8 6 3.4561 -2.7240 4.7184 9 1 4.3192 -3.3364 4.4575 10 6 2.3480 -3.6173 5.2797 11 7 3.8464 -1.7335 5.7306 12 6 4.8471 -2.2885 6.6518 13 6 5.2217 -1.2462 7.6738 14 1 4.7627 -0.2692 7.6419 15 6 6.1513 -1.5397 8.6489 16 7 6.7106 -2.7294 8.6874 17 14 6.6161 -0.2476 9.9153 18 1 5.7151 -0.3596 11.0904 19 1 8.0210 -0.4602 10.3467 20 1 6.4817 1.1042 9.3156 21 6 2.1551 -0.8925 3.6147 22 6 1.6979 -0.2383 2.4860 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8901 30 1 3.0878 -2.2034 0.1229 31 1 3.9081 -3.3644 2.1334 32 1 2.0584 -4.3522 4.5287 33 1 2.7115 -4.1314 6.1694 34 1 1.4848 -3.0048 5.5406 35 1 3.0405 -1.3940 6.2340 36 1 4.4315 -3.1599 7.1577 37 1 5.7339 -2.5827 6.0906 38 1 7.3643 -2.9359 9.3737 39 1 1.8908 -0.5260 4.5956 40 1 1.0766 0.6395 2.5851 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:15 Heat of formation + Delta-G solvation = -1.577064 kcal Electronic energy + Delta-G solvation = -17437.016206 eV Core-core repulsion = 14829.382384 eV Total energy + Delta-G solvation = -2607.633823 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.53639 -36.74735 -34.71280 -32.71167 -30.63850 -30.31198 -28.23350 -27.23528 -25.97876 -23.65411 -22.66926 -21.75421 -20.41497 -19.60748 -16.80652 -16.04271 -15.24316 -14.94400 -14.63735 -14.10830 -14.00262 -13.69110 -13.57162 -13.37705 -13.03145 -12.68803 -12.54219 -12.35004 -11.95787 -11.79742 -11.51025 -11.29530 -11.19175 -11.11575 -10.80025 -10.74512 -10.70157 -10.44514 -10.31803 -9.87630 -9.18174 -8.60513 -8.48987 -8.18261 -7.27383 -6.02677 -4.04371 1.65344 1.72436 3.32200 3.38338 3.43209 4.04366 4.43906 4.67623 4.77989 5.06552 5.12597 5.26519 5.29351 5.33263 5.39259 5.43179 5.50840 5.63472 5.67126 5.72641 5.74078 5.79233 5.88613 5.92872 6.10289 6.14134 6.19121 6.25471 6.33905 6.40085 6.50683 6.76667 6.85506 7.04932 7.26724 7.32311 7.43872 7.79642 8.13544 8.39705 8.61599 9.04845 9.60431 11.08410 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.032591 B = 0.004227 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.920027 B = 6621.712091 C = 7066.266332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.092 4.092 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.054 4.054 8 C 0.115 3.885 9 H 0.079 0.921 10 C -0.173 4.173 11 N -0.680 5.680 12 C 0.194 3.806 13 C -0.513 4.513 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.095 4.095 22 C -0.117 4.117 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.328 0.672 36 H -0.012 1.012 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.121 0.879 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.584 2.608 -15.875 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.092 4.092 5 C -0.139 4.139 6 C -0.137 4.137 7 C -0.055 4.055 8 C 0.005 3.995 9 H 0.097 0.903 10 C -0.232 4.232 11 N -0.310 5.310 12 C 0.068 3.932 13 C -0.552 4.552 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.113 4.113 22 C -0.135 4.135 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.146 0.854 36 H 0.006 0.994 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.958 2.808 -16.161 19.727 hybrid contribution -0.094 -0.051 1.319 1.323 sum -11.051 2.757 -14.842 18.709 Atomic orbital electron populations 1.21850 0.94694 1.01820 1.01646 1.20070 0.95645 0.95955 0.95555 1.21858 1.01380 0.95259 1.01629 1.19713 0.98897 0.96247 0.94384 1.20895 0.98914 0.96021 0.98066 1.20981 1.00489 1.00180 0.92053 1.20003 0.95702 0.95426 0.94351 1.20469 0.96169 0.91916 0.90991 0.90282 1.22459 0.99218 1.00207 1.01277 1.60781 1.15950 1.35891 1.18372 1.19585 0.89792 0.94117 0.89708 1.21188 1.23409 0.99284 1.11330 0.91994 1.24986 0.96127 0.95565 0.97894 1.69966 1.28708 1.20474 1.34624 0.86488 0.77599 0.81886 0.81385 1.20743 1.21247 1.19769 1.20935 0.96986 0.95002 0.98359 1.20888 1.00779 0.99850 0.92005 0.92759 0.92672 0.92454 0.90913 0.92484 0.92774 0.92407 0.86804 0.86517 0.92968 0.92006 0.92805 0.85439 0.99408 0.95460 0.92935 0.86100 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.01 37.16 0.33 -0.92 16 2 C -0.05 -0.54 3.09 -91.77 -0.28 -0.82 16 3 C -0.14 -1.36 9.01 37.16 0.33 -1.02 16 4 C -0.09 -1.16 4.78 -104.62 -0.50 -1.66 16 5 C -0.12 -1.58 9.67 -39.59 -0.38 -1.97 16 6 C -0.12 -1.74 9.67 -39.58 -0.38 -2.12 16 7 C -0.05 -0.88 4.95 -104.62 -0.52 -1.40 16 8 C 0.12 2.08 2.79 -68.86 -0.19 1.89 16 9 H 0.08 1.50 7.66 -51.93 -0.40 1.10 16 10 C -0.17 -2.75 9.14 37.16 0.34 -2.42 16 11 N -0.68 -14.61 5.70 -109.21 -0.62 -15.23 16 12 C 0.19 5.10 5.24 -4.98 -0.03 5.07 16 13 C -0.51 -14.63 9.32 -34.44 -0.32 -14.95 16 14 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 17 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.09 -1.46 9.32 -39.58 -0.37 -1.83 16 22 C -0.12 -1.58 8.71 -39.58 -0.34 -1.93 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.51 7.39 -51.93 -0.38 0.12 16 26 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.55 7.39 -51.92 -0.38 0.17 16 30 H 0.11 1.24 7.95 -52.49 -0.42 0.82 16 31 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.07 7.45 -51.93 -0.39 0.68 16 34 H 0.05 0.81 8.13 -51.93 -0.42 0.38 16 35 H 0.33 6.71 7.81 -39.29 -0.31 6.41 16 36 H -0.01 -0.33 7.44 -51.93 -0.39 -0.71 16 37 H 0.03 0.78 8.05 -51.93 -0.42 0.36 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.12 1.85 7.26 -52.49 -0.38 1.46 16 40 H 0.11 1.34 7.10 -52.49 -0.37 0.96 16 LS Contribution 326.38 15.07 4.92 4.92 Total: -1.00 -30.04 326.38 -9.14 -39.18 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.75 Total: 3.11 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -2.41 Total: -22.57 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.11 Total: -41.45 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.04 -9.14 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.604 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds