Wall clock time and date at job start Mon Mar 30 2020 06:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46885 * 2 1 4 4 C 1.50703 * 109.47068 * 119.99711 * 2 1 3 5 5 C 1.38233 * 119.99777 * 120.00491 * 4 2 1 6 6 C 1.38230 * 119.99925 * 180.02562 * 5 4 2 7 7 C 1.38236 * 119.99987 * 359.95616 * 6 5 4 8 8 C 1.50702 * 120.00097 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47294 * 19.99463 * 8 7 6 10 10 C 1.53002 * 109.47093 * 259.99753 * 8 7 6 11 11 N 1.46905 * 109.47206 * 139.99744 * 8 7 6 12 12 C 1.46901 * 110.99870 * 205.00135 * 11 8 7 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 8 14 14 H 1.08000 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99532 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47043 * 89.99858 * 17 15 13 19 19 H 1.48494 * 109.47326 * 209.99769 * 17 15 13 20 20 H 1.48497 * 109.47436 * 330.00047 * 17 15 13 21 21 C 1.38238 * 120.00103 * 0.27064 * 7 6 5 22 22 C 1.38234 * 119.99679 * 359.54224 * 21 7 6 23 23 H 1.09000 * 109.47100 * 60.00407 * 1 2 3 24 24 H 1.09003 * 109.46841 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47356 * 300.00338 * 1 2 3 26 26 H 1.08995 * 109.47658 * 240.00078 * 2 1 3 27 27 H 1.08999 * 109.47298 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47457 * 300.00229 * 3 2 1 29 29 H 1.09011 * 109.47134 * 59.99878 * 3 2 1 30 30 H 1.07993 * 120.00294 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.00329 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.47105 * 60.00118 * 10 8 7 33 33 H 1.08996 * 109.46950 * 179.97438 * 10 8 7 34 34 H 1.09003 * 109.46813 * 300.00004 * 10 8 7 35 35 H 1.00901 * 110.99869 * 81.04847 * 11 8 7 36 36 H 1.09004 * 109.47031 * 299.99620 * 12 11 8 37 37 H 1.08995 * 109.47111 * 59.99900 * 12 11 8 38 38 H 0.97001 * 119.99132 * 180.02562 * 16 15 13 39 39 H 1.07997 * 119.99876 * 179.72824 * 21 7 6 40 40 H 1.08002 * 119.99886 * 180.20034 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8272 -1.8342 1.1037 6 6 3.2875 -2.4861 2.2324 7 6 2.9538 -2.0136 3.4879 8 6 3.4561 -2.7240 4.7184 9 1 4.3192 -3.3364 4.4575 10 6 2.3480 -3.6173 5.2797 11 7 3.8464 -1.7335 5.7306 12 6 4.8471 -2.2885 6.6518 13 6 5.2217 -1.2462 7.6738 14 1 4.7627 -0.2692 7.6419 15 6 6.1513 -1.5397 8.6489 16 7 6.7106 -2.7294 8.6874 17 14 6.6161 -0.2476 9.9153 18 1 5.7151 -0.3596 11.0904 19 1 8.0210 -0.4602 10.3467 20 1 6.4817 1.1042 9.3156 21 6 2.1551 -0.8925 3.6147 22 6 1.6979 -0.2383 2.4860 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8901 30 1 3.0878 -2.2034 0.1229 31 1 3.9081 -3.3644 2.1334 32 1 2.0584 -4.3522 4.5287 33 1 2.7115 -4.1314 6.1694 34 1 1.4848 -3.0048 5.5406 35 1 3.0405 -1.3940 6.2340 36 1 4.4315 -3.1599 7.1577 37 1 5.7339 -2.5827 6.0906 38 1 7.3643 -2.9359 9.3737 39 1 1.8908 -0.5260 4.5956 40 1 1.0766 0.6395 2.5851 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:15 Heat of formation + Delta-G solvation = -17.975999 kcal Electronic energy + Delta-G solvation = -17437.727318 eV Core-core repulsion = 14829.382384 eV Total energy + Delta-G solvation = -2608.344934 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.64762 -38.11613 -35.96852 -34.68165 -31.92045 -31.73285 -29.47800 -27.94988 -27.92190 -24.94804 -23.92238 -23.46928 -21.68938 -20.66344 -18.70213 -17.42881 -16.67255 -16.39823 -16.00770 -15.67412 -15.21058 -14.96838 -14.60793 -14.42976 -14.26661 -14.12213 -13.87711 -13.57439 -13.28047 -13.19836 -12.98383 -12.66728 -12.58895 -12.53758 -12.20668 -11.99652 -11.95099 -11.86741 -11.52720 -11.39768 -11.20698 -10.67584 -9.70635 -9.33668 -9.06401 -8.22919 -6.34051 0.53732 0.61976 1.40388 1.42286 1.54091 2.39578 2.92365 3.10295 3.58289 3.81022 3.93216 4.02912 4.17154 4.23104 4.35412 4.39131 4.39574 4.59895 4.67001 4.70247 4.84981 4.86159 4.87244 5.03085 5.04608 5.04898 5.14799 5.18011 5.25102 5.28807 5.34288 5.40869 5.44425 5.59381 5.67058 5.82700 5.85784 6.03015 6.22494 6.46416 6.72074 6.89026 7.36807 8.88567 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.032591 B = 0.004227 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.920027 B = 6621.712091 C = 7066.266332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C -0.144 4.144 4 C -0.088 4.088 5 C -0.123 4.123 6 C -0.128 4.128 7 C -0.075 4.075 8 C 0.116 3.884 9 H 0.061 0.939 10 C -0.163 4.163 11 N -0.679 5.679 12 C 0.211 3.789 13 C -0.536 4.536 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.973 3.027 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.265 1.265 21 C -0.109 4.109 22 C -0.119 4.119 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.139 0.861 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.335 0.665 36 H -0.034 1.034 37 H -0.005 1.005 38 H 0.265 0.735 39 H 0.115 0.885 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.666 4.037 -17.139 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 C -0.201 4.201 4 C -0.088 4.088 5 C -0.140 4.140 6 C -0.147 4.147 7 C -0.076 4.076 8 C 0.006 3.994 9 H 0.079 0.921 10 C -0.222 4.222 11 N -0.309 5.309 12 C 0.084 3.916 13 C -0.574 4.574 14 H 0.082 0.918 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.190 1.190 21 C -0.127 4.127 22 C -0.137 4.137 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.157 0.843 31 H 0.142 0.858 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.153 0.847 36 H -0.016 1.016 37 H 0.014 0.986 38 H 0.074 0.926 39 H 0.133 0.867 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.063 4.236 -17.443 21.627 hybrid contribution 0.210 -0.509 1.599 1.691 sum -11.853 3.727 -15.845 20.135 Atomic orbital electron populations 1.21836 0.93606 1.01915 1.02450 1.20142 0.96483 0.95999 0.94497 1.21857 1.00750 0.95026 1.02445 1.20102 0.97695 0.95804 0.95217 1.21208 0.98346 0.95876 0.98603 1.21148 1.00749 1.00754 0.92014 1.19838 0.97405 0.96453 0.93906 1.20462 0.96302 0.91613 0.91021 0.92059 1.22339 0.98670 1.00293 1.00878 1.60649 1.15716 1.36904 1.17662 1.19193 0.89738 0.93118 0.89581 1.21547 1.23920 0.99720 1.12212 0.91846 1.25950 0.95830 0.97828 1.00066 1.70095 1.29216 1.22535 1.35572 0.85328 0.77433 0.78967 0.78545 1.19554 1.20702 1.18982 1.20989 0.97574 0.95190 0.98984 1.21094 1.00664 1.00160 0.91780 0.91008 0.92943 0.92672 0.89719 0.93474 0.90869 0.92761 0.84301 0.85835 0.90803 0.93971 0.91740 0.84749 1.01633 0.98647 0.92617 0.86651 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.01 71.98 0.65 -1.39 16 2 C -0.05 -0.89 3.09 -11.54 -0.04 -0.93 16 3 C -0.14 -2.32 9.01 71.98 0.65 -1.67 16 4 C -0.09 -2.03 4.78 -19.87 -0.09 -2.13 16 5 C -0.12 -2.96 9.67 22.27 0.22 -2.75 16 6 C -0.13 -3.67 9.67 22.27 0.22 -3.45 16 7 C -0.08 -2.45 4.95 -19.86 -0.10 -2.55 16 8 C 0.12 4.32 2.79 44.17 0.12 4.45 16 9 H 0.06 2.45 7.66 -2.39 -0.02 2.44 16 10 C -0.16 -5.28 9.14 71.98 0.66 -4.62 16 11 N -0.68 -30.15 5.70 -499.44 -2.85 -33.00 16 12 C 0.21 11.59 5.24 85.56 0.45 12.04 16 13 C -0.54 -31.16 9.32 25.60 0.24 -30.92 16 14 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 15 C 0.00 0.08 5.46 84.66 0.46 0.54 16 16 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 17 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 C -0.11 -3.32 9.32 22.27 0.21 -3.11 16 22 C -0.12 -3.03 8.71 22.27 0.19 -2.84 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.82 7.39 -2.39 -0.02 0.81 16 26 H 0.08 1.26 7.88 -2.39 -0.02 1.24 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.91 7.39 -2.38 -0.02 0.89 16 30 H 0.14 2.61 7.95 -2.91 -0.02 2.59 16 31 H 0.12 3.25 8.04 -2.91 -0.02 3.23 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.04 1.50 7.45 -2.39 -0.02 1.49 16 34 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 35 H 0.33 14.03 7.81 -89.69 -0.70 13.33 16 36 H -0.03 -1.97 7.44 -2.39 -0.02 -1.99 16 37 H 0.00 -0.28 8.05 -2.39 -0.02 -0.30 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.12 3.53 7.26 -2.91 -0.02 3.51 16 40 H 0.13 2.82 7.10 -2.91 -0.02 2.80 16 Total: -1.00 -64.99 326.38 3.59 -61.41 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.29 Total: 20.92 kcal Atomic # 6 Polarization: -43.16 SS G_CDS: 3.83 Total: -39.33 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -2.56 Total: -89.89 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.99 3.59 -61.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.430 kcal (2) G-P(sol) polarization free energy of solvation -64.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds