Wall clock time and date at job start Mon Mar 30 2020 06:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46910 * 2 1 4 4 C 1.50699 * 109.47299 * 119.99223 * 2 1 3 5 5 H 1.07999 * 120.00002 * 119.99744 * 4 2 1 6 6 C 1.37877 * 120.00593 * 300.00534 * 4 2 1 7 7 N 1.31518 * 119.99428 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00393 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47139 * 89.99846 * 8 6 4 10 10 H 1.48502 * 109.47308 * 209.99974 * 8 6 4 11 11 H 1.48500 * 109.47261 * 330.00156 * 8 6 4 12 12 N 1.46496 * 109.47481 * 239.99697 * 2 1 3 13 13 C 1.39674 * 120.00048 * 84.99500 * 12 2 1 14 14 C 1.38933 * 120.07175 * 354.24565 * 13 12 2 15 15 C 1.38086 * 119.91863 * 179.97438 * 14 13 12 16 16 C 1.38298 * 120.07997 * 359.97438 * 15 14 13 17 17 C 1.38268 * 120.14920 * 359.74390 * 16 15 14 18 18 C 1.38125 * 120.07436 * 0.50930 * 17 16 15 19 19 C 1.50700 * 120.03972 * 179.76540 * 18 17 16 20 20 C 1.52994 * 109.46896 * 1.62115 * 19 18 17 21 21 C 1.52997 * 109.47085 * 241.62136 * 19 18 17 22 22 C 1.53001 * 109.46925 * 121.62027 * 19 18 17 23 23 H 1.08993 * 109.47042 * 60.00370 * 1 2 3 24 24 H 1.08997 * 109.46985 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47337 * 300.00227 * 1 2 3 26 26 H 0.97005 * 119.99669 * 180.02562 * 7 6 4 27 27 H 0.96998 * 119.99882 * 265.00619 * 12 2 1 28 28 H 1.07999 * 120.03903 * 359.97438 * 14 13 12 29 29 H 1.08007 * 119.95853 * 179.97438 * 15 14 13 30 30 H 1.08000 * 119.92936 * 179.97438 * 16 15 14 31 31 H 1.08001 * 119.96234 * 180.28244 * 17 16 15 32 32 H 1.08991 * 109.47304 * 299.99712 * 20 19 18 33 33 H 1.09003 * 109.47284 * 60.00234 * 20 19 18 34 34 H 1.09005 * 109.46916 * 179.97438 * 20 19 18 35 35 H 1.09004 * 109.47139 * 175.01621 * 21 19 18 36 36 H 1.09004 * 109.46946 * 295.00881 * 21 19 18 37 37 H 1.08997 * 109.47516 * 55.01159 * 21 19 18 38 38 H 1.09000 * 109.46942 * 305.26134 * 22 19 18 39 39 H 1.09005 * 109.47194 * 65.25884 * 22 19 18 40 40 H 1.08995 * 109.47174 * 185.26046 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.6532 -1.5883 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3214 -1.1200 4.0081 9 1 3.6297 -0.5455 4.4124 10 1 1.3432 -0.9489 5.1122 11 1 2.4860 -2.5659 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 2.1517 0.0061 -2.3993 14 6 1.7104 1.3199 -2.4956 15 6 1.8442 2.0059 -3.6865 16 6 2.4173 1.3868 -4.7824 17 6 2.8629 0.0813 -4.6883 18 6 2.7273 -0.6125 -3.5016 19 6 3.2085 -2.0371 -3.4015 20 6 3.8376 -2.4576 -4.7312 21 6 2.0253 -2.9539 -3.0846 22 6 4.2509 -2.1461 -2.2869 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.7094 1.1620 3.4844 27 1 2.2490 -1.6318 -1.1525 28 1 1.2631 1.8041 -1.6401 29 1 1.5010 3.0271 -3.7622 30 1 2.5204 1.9254 -5.7128 31 1 3.3141 -0.3978 -5.5447 32 1 3.0950 -2.3799 -5.5252 33 1 4.6806 -1.8044 -4.9569 34 1 4.1860 -3.4879 -4.6586 35 1 2.3561 -3.9924 -3.0995 36 1 1.6325 -2.7119 -2.0970 37 1 1.2443 -2.8106 -3.8314 38 1 5.0492 -1.4254 -2.4643 39 1 3.7794 -1.9370 -1.3266 40 1 4.6669 -3.1536 -2.2757 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032013147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:56 Heat of formation + Delta-G solvation = 18.872990 kcal Electronic energy + Delta-G solvation = -18669.415157 eV Core-core repulsion = 16062.668115 eV Total energy + Delta-G solvation = -2606.747042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.72706 -35.91845 -35.57339 -32.72845 -29.75479 -29.50818 -27.60093 -26.93980 -26.68062 -25.21997 -22.34592 -21.64285 -19.99199 -18.98917 -16.95396 -16.17292 -15.39455 -15.04676 -14.39122 -13.96904 -13.69730 -13.60172 -13.34522 -13.09912 -12.86242 -12.18286 -11.92009 -11.85704 -11.62347 -11.49357 -11.40458 -11.08451 -11.04174 -10.94441 -10.70047 -10.63121 -10.45364 -10.28472 -10.13473 -9.73798 -9.24327 -8.98642 -8.48890 -8.15954 -6.43007 -6.15468 -4.23914 2.03995 2.33127 3.22402 3.29319 3.31602 4.26215 4.50320 4.62033 5.01075 5.12563 5.16842 5.28713 5.55270 5.61115 5.65939 5.77966 5.89342 5.97858 5.99000 6.09553 6.16439 6.18251 6.32144 6.37383 6.44320 6.57159 6.62837 6.70810 6.75120 6.95619 7.07801 7.10494 7.16273 7.25297 7.39974 7.59738 7.71164 7.87660 8.09274 8.41182 8.74770 8.94110 9.43432 10.89958 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024793 B = 0.007107 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.062172 B = 3939.099586 C = 4671.834965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.265 3.735 3 H 0.039 0.961 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.727 5.727 13 C 0.243 3.757 14 C -0.202 4.202 15 C -0.077 4.077 16 C -0.206 4.206 17 C -0.076 4.076 18 C -0.171 4.171 19 C -0.017 4.017 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.152 4.152 23 H 0.014 0.986 24 H 0.027 0.973 25 H 0.088 0.912 26 H 0.264 0.736 27 H 0.393 0.607 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 -3.482 -11.483 12.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.056 0.944 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.356 5.356 13 C 0.133 3.867 14 C -0.225 4.225 15 C -0.096 4.096 16 C -0.227 4.227 17 C -0.094 4.094 18 C -0.176 4.176 19 C -0.017 4.017 20 C -0.194 4.194 21 C -0.205 4.205 22 C -0.209 4.209 23 H 0.033 0.967 24 H 0.046 0.954 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.234 0.766 28 H 0.142 0.858 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.862 -3.289 -11.092 11.918 hybrid contribution 0.318 -0.638 0.922 1.165 sum 3.180 -3.928 -10.170 11.356 Atomic orbital electron populations 1.22191 0.98998 0.99432 1.00554 1.18698 0.90623 0.93463 0.80962 0.94371 1.21201 1.32048 1.13141 0.90361 0.92313 1.24863 0.94776 0.94986 0.99000 1.69882 1.36058 1.22584 1.23855 0.86477 0.78632 0.79943 0.82260 1.20541 1.21053 1.19868 1.46200 1.69499 1.12386 1.07469 1.17849 0.91048 0.91387 0.86375 1.20798 1.08247 0.94525 0.98967 1.20785 0.97465 0.98576 0.92757 1.20625 1.07444 0.96048 0.98584 1.20724 0.98341 0.94136 0.96234 1.19184 1.08280 0.96040 0.94075 1.19249 0.94967 0.91844 0.95687 1.21890 1.00327 1.00501 0.96638 1.22030 0.97719 0.98407 1.02335 1.22086 0.98726 1.00903 0.99234 0.96698 0.95394 0.89326 0.92620 0.76591 0.85808 0.87294 0.87689 0.86878 0.92615 0.92572 0.93012 0.92835 0.91719 0.92633 0.92644 0.90895 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.10 37.16 0.34 -3.32 16 2 C 0.27 6.47 2.23 -69.09 -0.15 6.32 16 3 H 0.04 1.03 6.76 -51.92 -0.35 0.68 16 4 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.38 11.32 55.43 0.63 -23.75 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.73 -15.27 3.96 -53.29 -0.21 -15.48 16 13 C 0.24 4.77 6.26 -83.78 -0.52 4.24 16 14 C -0.20 -3.96 8.70 -39.38 -0.34 -4.30 16 15 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 16 C -0.21 -3.23 10.04 -39.55 -0.40 -3.62 16 17 C -0.08 -1.18 8.97 -39.61 -0.36 -1.54 16 18 C -0.17 -2.91 4.77 -104.42 -0.50 -3.41 16 19 C -0.02 -0.26 0.75 -155.66 -0.12 -0.37 16 20 C -0.14 -1.65 7.13 37.15 0.27 -1.38 16 21 C -0.15 -2.13 8.18 37.16 0.30 -1.83 16 22 C -0.15 -2.31 8.13 37.16 0.30 -2.01 16 23 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.39 7.84 3.13 -40.82 -0.13 7.71 16 28 H 0.12 2.58 5.85 -52.49 -0.31 2.27 16 29 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 30 H 0.10 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.11 1.49 5.90 -52.49 -0.31 1.18 16 32 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 33 H 0.06 0.66 7.59 -51.93 -0.39 0.26 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 1.06 5.31 -51.93 -0.28 0.78 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.28 5.14 -51.93 -0.27 1.01 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -26.83 305.88 -8.00 -34.83 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.03 Total: 9.64 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -1.97 Total: -25.47 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.42 Total: -39.23 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.83 -8.00 -34.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032013147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.703 kcal (2) G-P(sol) polarization free energy of solvation -26.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds