Wall clock time and date at job start Mon Mar 30 2020 06:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46910 * 2 1 4 4 C 1.50699 * 109.47299 * 119.99223 * 2 1 3 5 5 H 1.07999 * 120.00002 * 119.99744 * 4 2 1 6 6 C 1.37877 * 120.00593 * 300.00534 * 4 2 1 7 7 N 1.31518 * 119.99428 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00393 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47139 * 89.99846 * 8 6 4 10 10 H 1.48502 * 109.47308 * 209.99974 * 8 6 4 11 11 H 1.48500 * 109.47261 * 330.00156 * 8 6 4 12 12 N 1.46496 * 109.47481 * 239.99697 * 2 1 3 13 13 C 1.39674 * 120.00048 * 84.99500 * 12 2 1 14 14 C 1.38933 * 120.07175 * 354.24565 * 13 12 2 15 15 C 1.38086 * 119.91863 * 179.97438 * 14 13 12 16 16 C 1.38298 * 120.07997 * 359.97438 * 15 14 13 17 17 C 1.38268 * 120.14920 * 359.74390 * 16 15 14 18 18 C 1.38125 * 120.07436 * 0.50930 * 17 16 15 19 19 C 1.50700 * 120.03972 * 179.76540 * 18 17 16 20 20 C 1.52994 * 109.46896 * 1.62115 * 19 18 17 21 21 C 1.52997 * 109.47085 * 241.62136 * 19 18 17 22 22 C 1.53001 * 109.46925 * 121.62027 * 19 18 17 23 23 H 1.08993 * 109.47042 * 60.00370 * 1 2 3 24 24 H 1.08997 * 109.46985 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47337 * 300.00227 * 1 2 3 26 26 H 0.97005 * 119.99669 * 180.02562 * 7 6 4 27 27 H 0.96998 * 119.99882 * 265.00619 * 12 2 1 28 28 H 1.07999 * 120.03903 * 359.97438 * 14 13 12 29 29 H 1.08007 * 119.95853 * 179.97438 * 15 14 13 30 30 H 1.08000 * 119.92936 * 179.97438 * 16 15 14 31 31 H 1.08001 * 119.96234 * 180.28244 * 17 16 15 32 32 H 1.08991 * 109.47304 * 299.99712 * 20 19 18 33 33 H 1.09003 * 109.47284 * 60.00234 * 20 19 18 34 34 H 1.09005 * 109.46916 * 179.97438 * 20 19 18 35 35 H 1.09004 * 109.47139 * 175.01621 * 21 19 18 36 36 H 1.09004 * 109.46946 * 295.00881 * 21 19 18 37 37 H 1.08997 * 109.47516 * 55.01159 * 21 19 18 38 38 H 1.09000 * 109.46942 * 305.26134 * 22 19 18 39 39 H 1.09005 * 109.47194 * 65.25884 * 22 19 18 40 40 H 1.08995 * 109.47174 * 185.26046 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.6532 -1.5883 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3214 -1.1200 4.0081 9 1 3.6297 -0.5455 4.4124 10 1 1.3432 -0.9489 5.1122 11 1 2.4860 -2.5659 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 2.1517 0.0061 -2.3993 14 6 1.7104 1.3199 -2.4956 15 6 1.8442 2.0059 -3.6865 16 6 2.4173 1.3868 -4.7824 17 6 2.8629 0.0813 -4.6883 18 6 2.7273 -0.6125 -3.5016 19 6 3.2085 -2.0371 -3.4015 20 6 3.8376 -2.4576 -4.7312 21 6 2.0253 -2.9539 -3.0846 22 6 4.2509 -2.1461 -2.2869 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.7094 1.1620 3.4844 27 1 2.2490 -1.6318 -1.1525 28 1 1.2631 1.8041 -1.6401 29 1 1.5010 3.0271 -3.7622 30 1 2.5204 1.9254 -5.7128 31 1 3.3141 -0.3978 -5.5447 32 1 3.0950 -2.3799 -5.5252 33 1 4.6806 -1.8044 -4.9569 34 1 4.1860 -3.4879 -4.6586 35 1 2.3561 -3.9924 -3.0995 36 1 1.6325 -2.7119 -2.0970 37 1 1.2443 -2.8106 -3.8314 38 1 5.0492 -1.4254 -2.4643 39 1 3.7794 -1.9370 -1.3266 40 1 4.6669 -3.1536 -2.2757 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032013147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:56 Heat of formation + Delta-G solvation = 6.408577 kcal Electronic energy + Delta-G solvation = -18669.955655 eV Core-core repulsion = 16062.668115 eV Total energy + Delta-G solvation = -2607.287539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07203 -37.35040 -37.07446 -34.59005 -31.50612 -30.82623 -28.99052 -28.10757 -27.92128 -27.25719 -23.70463 -23.23185 -21.60955 -20.32539 -18.65642 -17.67728 -17.13433 -16.58846 -15.93679 -15.15155 -15.07381 -15.00687 -14.77667 -14.60127 -14.35879 -13.81695 -13.50120 -13.05445 -13.04883 -12.93258 -12.84711 -12.72292 -12.52623 -12.48169 -12.28552 -12.16531 -12.03649 -11.76465 -11.40787 -11.17657 -11.05233 -10.72561 -10.46756 -9.50032 -8.21770 -7.93651 -6.35084 0.68746 0.96066 1.40085 1.40587 1.50862 2.35818 3.01017 3.09798 3.15522 3.84500 3.98038 4.18868 4.27441 4.36945 4.49362 4.70192 4.71248 4.74777 4.77594 4.91353 4.91981 4.95398 5.02175 5.04730 5.06100 5.13372 5.19194 5.26838 5.36590 5.43873 5.47107 5.47496 5.62560 5.75827 5.83596 5.85812 5.92273 6.10112 6.30405 6.58317 6.89724 7.27496 7.39047 8.85845 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024793 B = 0.007107 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.062172 B = 3939.099586 C = 4671.834965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.277 3.723 3 H 0.003 0.997 4 C -0.546 4.546 5 H 0.058 0.942 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.964 3.036 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.266 1.266 12 N -0.731 5.731 13 C 0.213 3.787 14 C -0.230 4.230 15 C -0.083 4.083 16 C -0.196 4.196 17 C -0.075 4.075 18 C -0.170 4.170 19 C -0.019 4.019 20 C -0.132 4.132 21 C -0.144 4.144 22 C -0.149 4.149 23 H 0.022 0.978 24 H 0.026 0.974 25 H 0.065 0.935 26 H 0.265 0.735 27 H 0.398 0.602 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.043 0.957 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 -4.765 -13.586 14.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.172 3.828 3 H 0.021 0.979 4 C -0.584 4.584 5 H 0.076 0.924 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.789 3.211 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.191 1.191 12 N -0.362 5.362 13 C 0.107 3.893 14 C -0.254 4.254 15 C -0.102 4.102 16 C -0.217 4.217 17 C -0.093 4.093 18 C -0.175 4.175 19 C -0.019 4.019 20 C -0.189 4.189 21 C -0.202 4.202 22 C -0.206 4.206 23 H 0.041 0.959 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.239 0.761 28 H 0.114 0.886 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.165 0.835 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.044 -4.571 -13.236 14.575 hybrid contribution -0.030 -0.178 1.453 1.465 sum 4.014 -4.750 -11.783 13.323 Atomic orbital electron populations 1.21995 0.99014 0.98941 0.99717 1.18285 0.90509 0.91801 0.82178 0.97898 1.21515 1.32166 1.13280 0.91447 0.92355 1.25675 0.94903 0.95645 1.01881 1.70011 1.36939 1.23769 1.24504 0.85472 0.78025 0.79065 0.78580 1.20223 1.20604 1.19070 1.45872 1.70810 1.12455 1.07085 1.18141 0.92721 0.91710 0.86764 1.20810 1.09876 0.95225 0.99456 1.21050 0.97426 0.99520 0.92175 1.21067 1.05261 0.96178 0.99146 1.21160 0.97477 0.94156 0.96557 1.19544 1.07014 0.97370 0.93557 1.19328 0.94907 0.90462 0.97185 1.21857 1.00561 1.01642 0.94812 1.21999 0.97705 0.99667 1.00815 1.22046 0.98554 1.02024 0.98022 0.95932 0.95462 0.91606 0.92542 0.76053 0.88624 0.85337 0.84270 0.83535 0.91563 0.91953 0.91307 0.90617 0.94266 0.92497 0.93179 0.93798 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.92 9.10 71.98 0.65 -6.27 16 2 C 0.28 14.23 2.23 44.24 0.10 14.33 16 3 H 0.00 0.19 6.76 -2.38 -0.02 0.17 16 4 C -0.55 -29.74 8.73 25.60 0.22 -29.52 16 5 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.91 -51.96 11.32 21.45 0.24 -51.72 16 8 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 9 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 12 N -0.73 -31.99 3.96 -322.51 -1.28 -33.26 16 13 C 0.21 8.55 6.26 38.22 0.24 8.79 16 14 C -0.23 -9.34 8.70 22.40 0.19 -9.14 16 15 C -0.08 -2.73 10.04 22.25 0.22 -2.51 16 16 C -0.20 -5.53 10.04 22.29 0.22 -5.31 16 17 C -0.08 -2.11 8.97 22.25 0.20 -1.91 16 18 C -0.17 -5.55 4.77 -19.73 -0.09 -5.65 16 19 C -0.02 -0.51 0.75 -52.93 -0.04 -0.55 16 20 C -0.13 -2.64 7.13 71.98 0.51 -2.13 16 21 C -0.14 -3.95 8.18 71.98 0.59 -3.36 16 22 C -0.15 -4.36 8.13 71.98 0.58 -3.77 16 23 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 26 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 27 H 0.40 16.42 3.13 -92.71 -0.29 16.13 16 28 H 0.10 4.32 5.85 -2.91 -0.02 4.30 16 29 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.15 3.14 5.90 -2.91 -0.02 3.12 16 32 H 0.07 1.21 7.44 -2.39 -0.02 1.19 16 33 H 0.06 1.19 7.59 -2.39 -0.02 1.17 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.04 1.27 5.31 -2.39 -0.01 1.26 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.04 1.55 5.14 -2.38 -0.01 1.53 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -59.54 305.88 5.78 -53.76 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.73 Total: 31.84 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 4.06 Total: -45.50 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -1.04 Total: -84.98 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -59.54 5.78 -53.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032013147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.166 kcal (2) G-P(sol) polarization free energy of solvation -59.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds