Wall clock time and date at job start Mon Mar 30 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47444 * 2 1 4 4 C 1.52996 * 109.47105 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47105 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47444 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.47722 * 179.97438 * 6 5 4 8 8 C 1.38856 * 120.00469 * 179.97438 * 7 6 5 9 9 C 1.39564 * 119.83805 * 359.72843 * 8 7 6 10 10 C 1.36344 * 120.15889 * 179.72127 * 9 8 7 11 11 C 1.40890 * 119.83562 * 0.54827 * 10 9 8 12 12 C 1.41130 * 120.15796 * 179.70390 * 11 10 9 13 13 H 1.08002 * 119.99890 * 204.63732 * 12 11 10 14 14 C 1.39868 * 120.00093 * 24.62666 * 12 11 10 15 15 N 1.30900 * 119.99549 * 17.96371 * 14 12 11 16 16 Si 1.86800 * 120.00249 * 197.95588 * 14 12 11 17 17 H 1.48506 * 109.46918 * 60.00132 * 16 14 12 18 18 H 1.48494 * 109.47059 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47045 * 300.00576 * 16 14 12 20 20 C 1.40890 * 119.68649 * 359.72642 * 11 10 9 21 21 C 1.36339 * 119.83897 * 359.97438 * 20 11 10 22 22 H 1.09004 * 109.47110 * 60.00104 * 1 2 3 23 23 H 1.08994 * 109.47325 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47013 * 300.00457 * 1 2 3 25 25 H 1.09003 * 109.47176 * 239.99728 * 2 1 3 26 26 H 1.09006 * 109.46870 * 120.00386 * 2 1 3 27 27 H 1.08994 * 109.47389 * 59.99773 * 3 2 1 28 28 H 1.09004 * 109.46883 * 300.00035 * 3 2 1 29 29 H 1.09003 * 109.47407 * 59.99794 * 4 3 2 30 30 H 1.09004 * 109.47217 * 299.99754 * 4 3 2 31 31 H 1.08994 * 109.47389 * 59.99697 * 5 4 3 32 32 H 1.08996 * 109.46960 * 299.99724 * 5 4 3 33 33 H 1.09003 * 109.47176 * 59.99728 * 6 5 4 34 34 H 1.09004 * 109.47110 * 299.99896 * 6 5 4 35 35 H 0.97004 * 119.99357 * 0.02562 * 7 6 5 36 36 H 1.08002 * 119.92350 * 359.97438 * 9 8 7 37 37 H 1.07998 * 120.08326 * 180.27560 * 10 9 8 38 38 H 0.97000 * 119.99705 * 180.02562 * 15 14 12 39 39 H 1.08004 * 120.07951 * 179.97438 * 20 11 10 40 40 H 1.07997 * 119.91946 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6101 2.8848 0.0000 7 7 6.0986 4.2659 0.0000 8 6 7.4637 4.5196 0.0005 9 6 8.3676 3.4563 0.0068 10 6 9.7095 3.6978 0.0016 11 6 10.1828 5.0248 0.0016 12 6 11.5704 5.2827 0.0026 13 1 11.9457 6.2173 0.3925 14 6 12.4595 4.3277 -0.5012 15 7 12.0207 3.3715 -1.2800 16 14 14.2732 4.4171 -0.0630 17 1 14.4322 4.3135 1.4099 18 1 14.9967 3.2987 -0.7193 19 1 14.8325 5.7106 -0.5314 20 6 9.2644 6.0932 0.0011 21 6 7.9254 5.8368 0.0001 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.9330 0.9286 -0.8908 30 1 3.9337 0.9284 0.8892 31 1 3.7172 3.3982 0.8904 32 1 3.7165 3.3991 -0.8895 33 1 5.9734 2.3713 -0.8902 34 1 5.9734 2.3706 0.8898 35 1 5.4682 5.0032 0.0004 36 1 8.0034 2.4395 0.0117 37 1 10.4079 2.8740 0.0020 38 1 12.6372 2.7090 -1.6291 39 1 9.6203 7.1130 0.0015 40 1 7.2202 6.6547 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035037779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:14 Heat of formation + Delta-G solvation = -13.808015 kcal Electronic energy + Delta-G solvation = -16792.646096 eV Core-core repulsion = 14184.481899 eV Total energy + Delta-G solvation = -2608.164197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.03295 -36.72096 -35.06520 -33.33979 -31.91411 -29.41904 -29.05572 -27.31790 -24.55051 -23.29211 -21.69927 -21.17410 -20.51385 -19.78566 -17.16688 -16.11205 -16.00352 -15.04473 -14.83895 -14.78747 -14.00363 -13.77408 -13.29750 -13.24723 -12.75113 -12.51346 -12.24203 -12.01132 -11.90638 -11.61665 -11.50857 -11.25107 -11.05050 -10.98464 -10.91881 -10.79788 -10.60009 -10.49039 -10.38732 -9.67091 -9.24549 -9.17587 -8.48061 -7.45387 -6.60667 -6.34401 -3.99560 2.96194 3.13766 3.16289 3.19576 3.39666 4.07986 4.26855 4.71220 4.71408 4.80260 4.86290 5.03073 5.20442 5.30343 5.38147 5.54959 5.65761 5.69125 5.75183 5.83285 5.86412 5.89540 5.97473 6.07104 6.15125 6.31527 6.31663 6.35721 6.38645 6.97914 6.98647 7.24030 7.39695 7.59940 7.73041 7.88708 8.18810 8.33608 8.54141 8.75612 8.84656 9.09533 9.19375 10.40980 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.046831 B = 0.003237 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.745070 B = 8648.104228 C = 9141.301498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.128 4.128 6 C 0.138 3.862 7 N -0.764 5.764 8 C 0.092 3.908 9 C -0.164 4.164 10 C -0.125 4.125 11 C 0.073 3.927 12 C -0.468 4.468 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.808 5.808 16 Si 0.903 3.097 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.187 4.187 21 C -0.161 4.161 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.383 0.617 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.276 0.724 39 H 0.091 0.909 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.537 -5.299 1.815 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.166 4.166 6 C 0.012 3.988 7 N -0.400 5.400 8 C -0.005 4.005 9 C -0.186 4.186 10 C -0.145 4.145 11 C 0.070 3.930 12 C -0.499 4.499 13 H 0.090 0.910 14 C -0.141 4.141 15 N -0.436 5.436 16 Si 0.728 3.272 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.207 4.207 21 C -0.183 4.183 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.215 0.785 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.413 -5.702 1.668 16.518 hybrid contribution 0.633 0.253 0.053 0.683 sum -14.780 -5.449 1.722 15.847 Atomic orbital electron populations 1.21781 0.96099 1.01429 1.01724 1.21550 0.95651 0.97145 1.02058 1.21616 0.95533 0.96562 1.01966 1.21522 0.95087 0.96542 1.02387 1.21753 0.95639 0.97089 1.02127 1.21004 0.92259 0.85373 1.00117 1.43887 1.03804 1.04868 1.87392 1.17371 0.82537 0.93353 1.07221 1.20101 0.93748 0.95405 1.09371 1.20939 0.93124 0.97635 1.02754 1.17494 0.93012 0.90926 0.91539 1.19325 0.91138 1.02459 1.36949 0.91002 1.25796 1.00886 0.94553 0.92848 1.69851 1.37168 1.12944 1.23613 0.86463 0.82478 0.78468 0.79755 1.19104 1.20612 1.19288 1.20544 0.92196 0.97545 1.10428 1.19811 0.95511 0.93086 1.09863 0.92825 0.92928 0.92840 0.92035 0.92051 0.92108 0.92099 0.91774 0.91812 0.91845 0.91820 0.93646 0.93703 0.78499 0.89432 0.86391 0.91304 0.89069 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -1.02 5.21 -26.73 -0.14 -1.16 16 4 C -0.12 -1.16 5.21 -26.73 -0.14 -1.30 16 5 C -0.13 -1.47 5.33 -26.73 -0.14 -1.62 16 6 C 0.14 2.11 4.89 -4.04 -0.02 2.09 16 7 N -0.76 -13.82 5.70 -58.50 -0.33 -14.15 16 8 C 0.09 2.08 6.67 -83.69 -0.56 1.53 16 9 C -0.16 -3.98 9.23 -39.77 -0.37 -4.35 16 10 C -0.12 -3.35 8.64 -39.26 -0.34 -3.69 16 11 C 0.07 2.03 5.57 -106.79 -0.60 1.43 16 12 C -0.47 -12.94 9.03 -37.88 -0.34 -13.28 16 13 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 14 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 15 N -0.81 -21.84 10.96 55.54 0.61 -21.23 16 16 Si 0.90 19.52 29.60 -169.99 -5.03 14.49 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 C -0.19 -4.75 9.74 -39.26 -0.38 -5.14 16 21 C -0.16 -3.72 9.82 -39.77 -0.39 -4.11 16 22 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 34 H 0.04 0.71 7.91 -51.93 -0.41 0.30 16 35 H 0.38 6.13 8.47 -40.82 -0.35 5.79 16 36 H 0.09 1.94 6.68 -52.49 -0.35 1.59 16 37 H 0.12 3.28 6.16 -52.49 -0.32 2.95 16 38 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 39 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -28.52 326.95 -10.01 -38.53 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.89 Total: 7.02 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -3.29 Total: -29.58 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.28 Total: -35.38 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.52 -10.01 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035037779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.722 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds