Wall clock time and date at job start Mon Mar 30 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47444 * 2 1 4 4 C 1.52996 * 109.47105 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47105 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47444 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.47722 * 179.97438 * 6 5 4 8 8 C 1.38856 * 120.00469 * 179.97438 * 7 6 5 9 9 C 1.39564 * 119.83805 * 359.72843 * 8 7 6 10 10 C 1.36344 * 120.15889 * 179.72127 * 9 8 7 11 11 C 1.40890 * 119.83562 * 0.54827 * 10 9 8 12 12 C 1.41130 * 120.15796 * 179.70390 * 11 10 9 13 13 H 1.08002 * 119.99890 * 204.63732 * 12 11 10 14 14 C 1.39868 * 120.00093 * 24.62666 * 12 11 10 15 15 N 1.30900 * 119.99549 * 17.96371 * 14 12 11 16 16 Si 1.86800 * 120.00249 * 197.95588 * 14 12 11 17 17 H 1.48506 * 109.46918 * 60.00132 * 16 14 12 18 18 H 1.48494 * 109.47059 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47045 * 300.00576 * 16 14 12 20 20 C 1.40890 * 119.68649 * 359.72642 * 11 10 9 21 21 C 1.36339 * 119.83897 * 359.97438 * 20 11 10 22 22 H 1.09004 * 109.47110 * 60.00104 * 1 2 3 23 23 H 1.08994 * 109.47325 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47013 * 300.00457 * 1 2 3 25 25 H 1.09003 * 109.47176 * 239.99728 * 2 1 3 26 26 H 1.09006 * 109.46870 * 120.00386 * 2 1 3 27 27 H 1.08994 * 109.47389 * 59.99773 * 3 2 1 28 28 H 1.09004 * 109.46883 * 300.00035 * 3 2 1 29 29 H 1.09003 * 109.47407 * 59.99794 * 4 3 2 30 30 H 1.09004 * 109.47217 * 299.99754 * 4 3 2 31 31 H 1.08994 * 109.47389 * 59.99697 * 5 4 3 32 32 H 1.08996 * 109.46960 * 299.99724 * 5 4 3 33 33 H 1.09003 * 109.47176 * 59.99728 * 6 5 4 34 34 H 1.09004 * 109.47110 * 299.99896 * 6 5 4 35 35 H 0.97004 * 119.99357 * 0.02562 * 7 6 5 36 36 H 1.08002 * 119.92350 * 359.97438 * 9 8 7 37 37 H 1.07998 * 120.08326 * 180.27560 * 10 9 8 38 38 H 0.97000 * 119.99705 * 180.02562 * 15 14 12 39 39 H 1.08004 * 120.07951 * 179.97438 * 20 11 10 40 40 H 1.07997 * 119.91946 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6101 2.8848 0.0000 7 7 6.0986 4.2659 0.0000 8 6 7.4637 4.5196 0.0005 9 6 8.3676 3.4563 0.0068 10 6 9.7095 3.6978 0.0016 11 6 10.1828 5.0248 0.0016 12 6 11.5704 5.2827 0.0026 13 1 11.9457 6.2173 0.3925 14 6 12.4595 4.3277 -0.5012 15 7 12.0207 3.3715 -1.2800 16 14 14.2732 4.4171 -0.0630 17 1 14.4322 4.3135 1.4099 18 1 14.9967 3.2987 -0.7193 19 1 14.8325 5.7106 -0.5314 20 6 9.2644 6.0932 0.0011 21 6 7.9254 5.8368 0.0001 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.9330 0.9286 -0.8908 30 1 3.9337 0.9284 0.8892 31 1 3.7172 3.3982 0.8904 32 1 3.7165 3.3991 -0.8895 33 1 5.9734 2.3713 -0.8902 34 1 5.9734 2.3706 0.8898 35 1 5.4682 5.0032 0.0004 36 1 8.0034 2.4395 0.0117 37 1 10.4079 2.8740 0.0020 38 1 12.6372 2.7090 -1.6291 39 1 9.6203 7.1130 0.0015 40 1 7.2202 6.6547 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035037779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:13 Heat of formation + Delta-G solvation = -27.590726 kcal Electronic energy + Delta-G solvation = -16793.243759 eV Core-core repulsion = 14184.481899 eV Total energy + Delta-G solvation = -2608.761860 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.80968 -37.78784 -36.42708 -34.97381 -33.14640 -31.35542 -30.62230 -28.59169 -26.16031 -24.61045 -23.12808 -22.08977 -21.82846 -21.44645 -19.15154 -17.74017 -16.91502 -16.81134 -16.40073 -15.69487 -15.64113 -14.79560 -14.59506 -14.38844 -14.24063 -13.91935 -13.90064 -13.53653 -13.21436 -12.93812 -12.73824 -12.72396 -12.44402 -12.32580 -12.23770 -11.78790 -11.67701 -11.59444 -11.36845 -11.34023 -11.17249 -11.04272 -10.28811 -9.41439 -8.54927 -8.16809 -6.00741 1.10934 1.18263 1.40100 1.51308 1.60238 2.27567 2.84127 2.91116 3.84475 3.85576 4.00752 4.13066 4.24903 4.37743 4.42460 4.50321 4.53719 4.59256 4.76393 4.85490 4.92889 4.94734 5.03409 5.07195 5.12056 5.16357 5.25160 5.25241 5.29035 5.38675 5.45843 5.49403 5.53777 5.68815 5.80327 5.96337 6.18588 6.38822 6.66907 6.86988 7.08135 7.15616 7.33246 8.48458 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.046831 B = 0.003237 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.745070 B = 8648.104228 C = 9141.301498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.115 4.115 4 C -0.115 4.115 5 C -0.116 4.116 6 C 0.134 3.866 7 N -0.754 5.754 8 C 0.109 3.891 9 C -0.176 4.176 10 C -0.145 4.145 11 C 0.034 3.966 12 C -0.506 4.506 13 H 0.069 0.931 14 C 0.030 3.970 15 N -0.842 5.842 16 Si 0.978 3.022 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.261 1.261 20 C -0.196 4.196 21 C -0.166 4.166 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.040 0.960 35 H 0.397 0.603 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.282 0.718 39 H 0.098 0.902 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.006 -5.245 2.072 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.153 4.153 4 C -0.153 4.153 5 C -0.153 4.153 6 C 0.009 3.991 7 N -0.389 5.389 8 C 0.009 3.991 9 C -0.198 4.198 10 C -0.165 4.165 11 C 0.031 3.969 12 C -0.537 4.537 13 H 0.087 0.913 14 C -0.182 4.182 15 N -0.470 5.470 16 Si 0.800 3.200 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.186 1.186 20 C -0.216 4.216 21 C -0.188 4.188 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.231 0.769 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.939 -5.645 1.925 17.958 hybrid contribution 0.892 0.230 -0.032 0.922 sum -16.047 -5.415 1.893 17.041 Atomic orbital electron populations 1.21777 0.95392 1.01892 1.01934 1.21553 0.96296 0.96661 1.01998 1.21574 0.94301 0.97108 1.02269 1.21501 0.96128 0.95375 1.02289 1.21659 0.92457 0.98355 1.02874 1.21173 0.94962 0.83565 0.99400 1.43962 1.02202 1.06771 1.85975 1.17500 0.84437 0.92783 1.04378 1.20252 0.93154 0.96831 1.09605 1.20874 0.94078 0.97049 1.04506 1.17841 0.93868 0.91872 0.93355 1.19567 0.92014 1.03354 1.38762 0.91298 1.26649 1.05560 0.93844 0.92128 1.69919 1.38977 1.13739 1.24400 0.85324 0.76407 0.78881 0.79436 1.18749 1.19462 1.18567 1.20775 0.93173 0.97479 1.10173 1.20126 0.95260 0.94398 1.09056 0.92651 0.92402 0.92597 0.92182 0.92091 0.91728 0.91849 0.92032 0.91864 0.90951 0.91154 0.94567 0.94178 0.76858 0.87944 0.88287 0.90745 0.88347 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.12 16 2 C -0.13 -1.76 5.93 30.59 0.18 -1.58 16 3 C -0.11 -1.70 5.21 30.59 0.16 -1.54 16 4 C -0.11 -2.03 5.21 30.59 0.16 -1.87 16 5 C -0.12 -2.35 5.33 30.59 0.16 -2.19 16 6 C 0.13 3.83 4.89 86.38 0.42 4.26 16 7 N -0.75 -25.44 5.70 -338.99 -1.93 -27.37 16 8 C 0.11 4.76 6.67 38.67 0.26 5.02 16 9 C -0.18 -8.57 9.23 22.15 0.20 -8.36 16 10 C -0.14 -8.05 8.64 22.48 0.19 -7.86 16 11 C 0.03 1.91 5.57 -21.27 -0.12 1.79 16 12 C -0.51 -28.91 9.03 23.38 0.21 -28.70 16 13 H 0.07 3.80 7.91 -2.91 -0.02 3.78 16 14 C 0.03 1.61 5.13 85.23 0.44 2.05 16 15 N -0.84 -46.83 10.96 21.82 0.24 -46.59 16 16 Si 0.98 40.64 29.60 68.60 2.03 42.67 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 20 C -0.20 -10.02 9.74 22.48 0.22 -9.80 16 21 C -0.17 -7.46 9.82 22.15 0.22 -7.24 16 22 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 23 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.04 1.12 7.94 -2.39 -0.02 1.11 16 34 H 0.04 1.21 7.91 -2.38 -0.02 1.19 16 35 H 0.40 11.39 8.47 -92.71 -0.79 10.61 16 36 H 0.10 4.55 6.68 -2.91 -0.02 4.53 16 37 H 0.10 5.77 6.16 -2.91 -0.02 5.75 16 38 H 0.28 14.30 8.30 -92.71 -0.77 13.53 16 39 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 40 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -62.18 326.95 3.97 -58.21 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.21 Total: 30.23 kcal Atomic # 6 Polarization: -60.58 SS G_CDS: 3.42 Total: -57.16 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.69 Total: -73.96 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -62.18 3.97 -58.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035037779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.622 kcal (2) G-P(sol) polarization free energy of solvation -62.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds