Wall clock time and date at job start Mon Mar 30 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46906 * 55.00224 * 5 4 3 7 7 C 1.50699 * 109.47482 * 174.99860 * 5 4 3 8 8 H 1.08003 * 120.00033 * 240.00298 * 7 5 4 9 9 C 1.37876 * 119.99667 * 60.00298 * 7 5 4 10 10 N 1.31512 * 120.00518 * 359.97438 * 9 7 5 11 11 Si 1.86810 * 119.99855 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46911 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46766 * 119.99958 * 11 9 7 14 14 H 1.48496 * 109.46885 * 239.99960 * 11 9 7 15 15 N 1.46898 * 109.47092 * 295.00148 * 5 4 3 16 16 C 1.46905 * 110.99865 * 155.00007 * 15 5 4 17 17 C 1.50701 * 109.46951 * 179.97438 * 16 15 5 18 18 C 1.38233 * 120.00175 * 269.72473 * 17 16 15 19 19 C 1.38235 * 119.99957 * 179.76784 * 18 17 16 20 20 C 1.38237 * 120.00014 * 0.50664 * 19 18 17 21 21 C 1.38234 * 120.00008 * 359.74338 * 20 19 18 22 22 C 1.38236 * 119.99777 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 24 24 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 25 25 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 27 27 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 28 28 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 29 29 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 31 31 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 32 32 H 0.96994 * 120.00234 * 180.02562 * 10 9 7 33 33 H 1.00895 * 111.00265 * 278.94995 * 15 5 4 34 34 H 1.09003 * 109.46905 * 299.99465 * 16 15 5 35 35 H 1.08999 * 109.47700 * 60.00069 * 16 15 5 36 36 H 1.08002 * 119.99541 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.99894 * 180.22814 * 19 18 17 38 38 H 1.08003 * 119.99545 * 179.72435 * 20 19 18 39 39 H 1.07998 * 119.99988 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.99484 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6457 3.4235 0.8424 7 6 5.5819 2.8868 0.1232 8 1 6.0544 3.3779 0.9611 9 6 6.3528 2.2614 -0.8337 10 7 5.7774 1.6629 -1.8536 11 14 8.2146 2.2629 -0.6806 12 1 8.6095 2.9967 0.5485 13 1 8.7058 0.8638 -0.6006 14 1 8.8082 2.9289 -1.8677 15 7 3.6908 3.5425 -1.2546 16 6 3.6121 4.9994 -1.0831 17 6 3.2118 5.6379 -2.3881 18 6 4.1817 6.0343 -3.2898 19 6 3.8144 6.6156 -4.4890 20 6 2.4775 6.8102 -4.7819 21 6 1.5077 6.4186 -3.8779 22 6 1.8749 5.8328 -2.6809 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.9337 0.9286 0.8891 31 1 3.9330 0.9289 -0.8908 32 1 6.3198 1.2226 -2.5266 33 1 4.3243 3.3001 -2.0016 34 1 2.8705 5.2358 -0.3200 35 1 4.5851 5.3821 -0.7752 36 1 5.2263 5.8866 -3.0588 37 1 4.5720 6.9219 -5.1951 38 1 2.1907 7.2685 -5.7169 39 1 0.4633 6.5709 -4.1066 40 1 1.1173 5.5273 -1.9745 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036438987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:05 Heat of formation + Delta-G solvation = -2.609469 kcal Electronic energy + Delta-G solvation = -17926.389052 eV Core-core repulsion = 15318.710461 eV Total energy + Delta-G solvation = -2607.678591 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.79633 -36.33843 -34.16155 -32.56546 -30.74613 -30.46879 -28.88782 -26.42049 -24.17148 -22.99932 -22.12011 -20.53166 -20.38888 -19.50604 -16.47585 -16.21098 -15.09093 -14.74720 -14.70039 -14.54887 -13.66676 -13.40782 -13.12318 -13.02318 -12.66797 -12.39811 -12.13807 -11.99858 -11.65783 -11.31398 -11.06045 -10.95172 -10.72335 -10.56890 -10.46185 -10.42980 -10.13288 -9.91375 -9.42956 -9.33546 -9.19119 -8.53960 -8.50793 -8.23359 -6.84630 -5.99340 -4.18519 1.80388 1.81950 3.22420 3.32166 3.35863 4.22176 4.36212 5.15062 5.28288 5.28905 5.39436 5.55590 5.59381 5.60032 5.79953 5.90462 5.94418 6.12570 6.22846 6.28648 6.34625 6.40121 6.42509 6.54566 6.57169 6.67584 6.80818 6.86625 6.87609 6.89260 7.03960 7.12607 7.23375 7.43946 7.51794 7.69121 7.77253 8.06497 8.25244 8.57723 8.94996 9.19512 9.53807 10.93708 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.008643 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.730014 B = 3238.907736 C = 5085.745933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.110 4.110 4 C -0.097 4.097 5 C 0.210 3.790 6 H 0.018 0.982 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.072 3.928 10 N -0.881 5.881 11 Si 0.885 3.115 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.284 1.284 15 N -0.677 5.677 16 C 0.098 3.902 17 C -0.059 4.059 18 C -0.113 4.113 19 C -0.124 4.124 20 C -0.136 4.136 21 C -0.127 4.127 22 C -0.105 4.105 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.090 0.910 32 H 0.263 0.737 33 H 0.361 0.639 34 H 0.058 0.942 35 H 0.031 0.969 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.042 4.923 -2.674 8.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.148 4.148 4 C -0.135 4.135 5 C 0.102 3.898 6 H 0.037 0.963 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.131 4.131 10 N -0.519 5.519 11 Si 0.713 3.287 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.210 1.210 15 N -0.313 5.313 16 C -0.032 4.032 17 C -0.059 4.059 18 C -0.132 4.132 19 C -0.142 4.142 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.123 4.123 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.184 0.816 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.663 4.702 -2.723 9.394 hybrid contribution 2.105 0.135 0.059 2.110 sum -5.558 4.836 -2.664 7.835 Atomic orbital electron populations 1.21779 0.97244 1.00306 1.01251 1.21567 0.94384 0.99094 1.01142 1.21591 0.98558 0.93946 1.00687 1.21493 0.91160 0.99010 1.01884 1.19078 0.92156 0.91242 0.87330 0.96337 1.21883 0.92995 1.35151 1.08808 0.93106 1.24979 0.98323 0.94409 0.95341 1.69740 1.34821 1.35583 1.11806 0.86654 0.86222 0.77847 0.77981 1.19945 1.20886 1.21034 1.61034 1.57077 1.02470 1.10671 1.20763 0.98822 0.91914 0.91683 1.20169 0.93060 0.95781 0.96915 1.21139 0.99588 0.98489 0.93976 1.21054 0.95974 1.00175 0.97007 1.20992 0.93261 1.01842 0.99295 1.21060 0.98831 0.99934 0.94667 1.21022 0.95823 0.98596 0.96907 0.93404 0.93058 0.93856 0.92481 0.93153 0.91660 0.94572 0.94949 0.89211 0.92712 0.81585 0.92404 0.95068 0.86352 0.86772 0.86932 0.86779 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.12 5.93 -26.73 -0.16 -2.28 16 3 C -0.11 -2.17 5.10 -26.73 -0.14 -2.31 16 4 C -0.10 -2.25 4.59 -26.74 -0.12 -2.38 16 5 C 0.21 5.11 2.22 -68.87 -0.15 4.96 16 6 H 0.02 0.45 7.80 -51.93 -0.40 0.04 16 7 C -0.55 -14.58 8.64 -34.44 -0.30 -14.87 16 8 H 0.05 1.38 7.81 -52.48 -0.41 0.97 16 9 C 0.07 1.90 5.03 -17.82 -0.09 1.81 16 10 N -0.88 -23.44 9.71 55.43 0.54 -22.90 16 11 Si 0.88 20.67 29.54 -169.99 -5.02 15.65 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 N -0.68 -15.59 5.68 -109.22 -0.62 -16.21 16 16 C 0.10 1.99 5.61 -4.97 -0.03 1.96 16 17 C -0.06 -1.07 5.39 -104.62 -0.56 -1.64 16 18 C -0.11 -1.99 9.70 -39.58 -0.38 -2.37 16 19 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 20 C -0.14 -1.91 10.05 -39.58 -0.40 -2.30 16 21 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 22 C -0.10 -1.72 9.70 -39.58 -0.38 -2.10 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 1.35 7.75 -51.93 -0.40 0.95 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 2.32 6.22 -51.93 -0.32 1.99 16 32 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.36 9.17 6.38 -39.29 -0.25 8.92 16 34 H 0.06 1.11 8.00 -51.93 -0.42 0.70 16 35 H 0.03 0.68 7.94 -51.93 -0.41 0.26 16 36 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 39 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 325.72 15.07 4.91 4.91 Total: -1.00 -26.29 325.72 -10.17 -36.45 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.83 Total: 9.88 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -3.14 Total: -27.78 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: -0.08 Total: -39.11 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.29 -10.17 -36.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036438987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.844 kcal (2) G-P(sol) polarization free energy of solvation -26.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds