Wall clock time and date at job start Mon Mar 30 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46906 * 55.00224 * 5 4 3 7 7 C 1.50699 * 109.47482 * 174.99860 * 5 4 3 8 8 H 1.08003 * 120.00033 * 240.00298 * 7 5 4 9 9 C 1.37876 * 119.99667 * 60.00298 * 7 5 4 10 10 N 1.31512 * 120.00518 * 359.97438 * 9 7 5 11 11 Si 1.86810 * 119.99855 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46911 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46766 * 119.99958 * 11 9 7 14 14 H 1.48496 * 109.46885 * 239.99960 * 11 9 7 15 15 N 1.46898 * 109.47092 * 295.00148 * 5 4 3 16 16 C 1.46905 * 110.99865 * 155.00007 * 15 5 4 17 17 C 1.50701 * 109.46951 * 179.97438 * 16 15 5 18 18 C 1.38233 * 120.00175 * 269.72473 * 17 16 15 19 19 C 1.38235 * 119.99957 * 179.76784 * 18 17 16 20 20 C 1.38237 * 120.00014 * 0.50664 * 19 18 17 21 21 C 1.38234 * 120.00008 * 359.74338 * 20 19 18 22 22 C 1.38236 * 119.99777 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 24 24 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 25 25 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 27 27 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 28 28 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 29 29 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 31 31 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 32 32 H 0.96994 * 120.00234 * 180.02562 * 10 9 7 33 33 H 1.00895 * 111.00265 * 278.94995 * 15 5 4 34 34 H 1.09003 * 109.46905 * 299.99465 * 16 15 5 35 35 H 1.08999 * 109.47700 * 60.00069 * 16 15 5 36 36 H 1.08002 * 119.99541 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.99894 * 180.22814 * 19 18 17 38 38 H 1.08003 * 119.99545 * 179.72435 * 20 19 18 39 39 H 1.07998 * 119.99988 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.99484 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6457 3.4235 0.8424 7 6 5.5819 2.8868 0.1232 8 1 6.0544 3.3779 0.9611 9 6 6.3528 2.2614 -0.8337 10 7 5.7774 1.6629 -1.8536 11 14 8.2146 2.2629 -0.6806 12 1 8.6095 2.9967 0.5485 13 1 8.7058 0.8638 -0.6006 14 1 8.8082 2.9289 -1.8677 15 7 3.6908 3.5425 -1.2546 16 6 3.6121 4.9994 -1.0831 17 6 3.2118 5.6379 -2.3881 18 6 4.1817 6.0343 -3.2898 19 6 3.8144 6.6156 -4.4890 20 6 2.4775 6.8102 -4.7819 21 6 1.5077 6.4186 -3.8779 22 6 1.8749 5.8328 -2.6809 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.9337 0.9286 0.8891 31 1 3.9330 0.9289 -0.8908 32 1 6.3198 1.2226 -2.5266 33 1 4.3243 3.3001 -2.0016 34 1 2.8705 5.2358 -0.3200 35 1 4.5851 5.3821 -0.7752 36 1 5.2263 5.8866 -3.0588 37 1 4.5720 6.9219 -5.1951 38 1 2.1907 7.2685 -5.7169 39 1 0.4633 6.5709 -4.1066 40 1 1.1173 5.5273 -1.9745 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036438987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:05 Heat of formation + Delta-G solvation = -14.831012 kcal Electronic energy + Delta-G solvation = -17926.919018 eV Core-core repulsion = 15318.710461 eV Total energy + Delta-G solvation = -2608.208557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.07979 -38.12082 -35.67328 -34.33987 -32.40516 -31.68342 -30.38232 -28.22002 -25.85171 -24.58257 -23.34430 -22.02348 -21.86068 -21.31271 -18.36046 -17.58544 -16.93646 -16.25610 -16.08341 -15.98673 -15.32198 -15.05322 -14.57235 -14.27711 -14.14330 -13.97477 -13.54899 -13.48480 -13.17571 -12.90822 -12.83211 -12.68407 -12.50136 -12.13352 -11.86787 -11.80453 -11.76489 -11.51579 -11.20199 -11.16791 -11.08786 -10.48085 -9.73039 -9.56610 -8.74546 -8.00889 -6.28582 0.55417 0.59549 1.33878 1.38478 1.47256 2.38740 2.95794 3.11498 3.97797 4.05624 4.21873 4.24759 4.27563 4.32974 4.37326 4.49145 4.59074 4.73329 4.76705 4.87444 4.93588 4.95517 5.04261 5.07192 5.16667 5.21990 5.26843 5.32907 5.40543 5.52687 5.63894 5.65914 5.68011 5.75597 5.85244 5.90560 6.09352 6.22465 6.24743 6.59573 6.96810 7.19720 7.46596 8.88203 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.008643 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.730014 B = 3238.907736 C = 5085.745933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C -0.099 4.099 4 C -0.089 4.089 5 C 0.207 3.793 6 H 0.013 0.987 7 C -0.572 4.572 8 H 0.036 0.964 9 C 0.038 3.962 10 N -0.893 5.893 11 Si 0.941 3.059 12 H -0.278 1.278 13 H -0.279 1.279 14 H -0.279 1.279 15 N -0.672 5.672 16 C 0.104 3.896 17 C -0.083 4.083 18 C -0.136 4.136 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.115 4.115 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.020 0.980 31 H 0.063 0.937 32 H 0.264 0.736 33 H 0.347 0.653 34 H 0.064 0.936 35 H 0.008 0.992 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 5.413 -3.938 10.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C -0.136 4.136 4 C -0.127 4.127 5 C 0.099 3.901 6 H 0.031 0.969 7 C -0.611 4.611 8 H 0.054 0.946 9 C -0.164 4.164 10 N -0.531 5.531 11 Si 0.768 3.232 12 H -0.203 1.203 13 H -0.204 1.204 14 H -0.205 1.205 15 N -0.305 5.305 16 C -0.026 4.026 17 C -0.084 4.084 18 C -0.154 4.154 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.140 4.140 22 C -0.133 4.133 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.168 0.832 34 H 0.082 0.918 35 H 0.026 0.974 36 H 0.120 0.880 37 H 0.155 0.845 38 H 0.167 0.833 39 H 0.166 0.834 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.085 5.198 -3.981 11.198 hybrid contribution 2.526 0.040 0.424 2.562 sum -6.559 5.238 -3.557 9.116 Atomic orbital electron populations 1.21715 0.94610 1.01844 1.01778 1.21515 0.96685 0.96858 1.00875 1.21434 0.95764 0.95978 1.00446 1.21339 0.93769 0.97719 0.99906 1.19086 0.91192 0.92056 0.87793 0.96881 1.22060 0.94465 1.35800 1.08793 0.94604 1.25506 1.01777 0.94071 0.95030 1.69846 1.35886 1.35460 1.11932 0.85784 0.81916 0.77798 0.77752 1.20256 1.20422 1.20521 1.61015 1.55984 1.04142 1.09381 1.20712 0.97820 0.90418 0.93654 1.20024 0.94449 0.97627 0.96294 1.21162 0.98773 1.00097 0.95399 1.21350 0.97549 0.99289 0.96218 1.21450 0.92423 1.00381 1.00375 1.21454 1.00777 0.98314 0.93474 1.21171 0.94885 0.99037 0.98221 0.92491 0.92934 0.91847 0.93444 0.92794 0.92680 0.93843 0.96078 0.91817 0.92640 0.83185 0.91762 0.97397 0.87988 0.84460 0.83259 0.83438 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.03 16 2 C -0.12 -4.05 5.93 30.59 0.18 -3.87 16 3 C -0.10 -3.88 5.10 30.59 0.16 -3.72 16 4 C -0.09 -4.24 4.59 30.59 0.14 -4.10 16 5 C 0.21 10.46 2.22 44.17 0.10 10.56 16 6 H 0.01 0.65 7.80 -2.39 -0.02 0.63 16 7 C -0.57 -31.48 8.64 25.60 0.22 -31.26 16 8 H 0.04 2.02 7.81 -2.91 -0.02 2.00 16 9 C 0.04 2.02 5.03 84.65 0.43 2.45 16 10 N -0.89 -48.54 9.71 21.45 0.21 -48.33 16 11 Si 0.94 43.18 29.54 68.60 2.03 45.21 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 15 N -0.67 -32.02 5.68 -499.46 -2.84 -34.86 16 16 C 0.10 4.38 5.61 85.56 0.48 4.86 16 17 C -0.08 -3.09 5.39 -19.87 -0.11 -3.20 16 18 C -0.14 -4.80 9.70 22.27 0.22 -4.59 16 19 C -0.13 -3.59 10.05 22.27 0.22 -3.37 16 20 C -0.13 -3.15 10.05 22.27 0.22 -2.93 16 21 C -0.12 -3.14 10.05 22.27 0.22 -2.92 16 22 C -0.11 -3.62 9.70 22.27 0.22 -3.40 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 2.27 7.75 -2.39 -0.02 2.25 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 3.39 6.22 -2.39 -0.01 3.37 16 32 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 33 H 0.35 18.30 6.38 -89.70 -0.57 17.72 16 34 H 0.06 2.56 8.00 -2.39 -0.02 2.54 16 35 H 0.01 0.36 7.94 -2.39 -0.02 0.34 16 36 H 0.10 3.82 8.06 -2.91 -0.02 3.79 16 37 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -57.59 325.72 3.22 -54.37 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.41 Total: 32.13 kcal Atomic # 6 Polarization: -51.92 SS G_CDS: 3.41 Total: -48.51 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -2.63 Total: -83.19 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -57.59 3.22 -54.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036438987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.535 kcal (2) G-P(sol) polarization free energy of solvation -57.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds